Rroxscaffold_1G00021920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001195
Physical Location & Seq
Forward (+)
26977401 .. 26978547
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021920.1

Sequence Viewer

Length: 582 bp
ATGGCTGGACCCGACGCAAGCTGTGTGGATGAGATGTGCCAGGGAGATGAAACTGTTTCAAAGGGCATACAAGGAAACAGTTCAGTTCCAGGGCCCGGGCACCTAGTTCTAAAACCAGCAATCGAAAAGGTTGCGGAGGATCCGCTGGGTCAGGTTTTGTCTTATGTTCTGAGGTCCAAGTTCAGGGGACCAGTGGCTGGTGGAGATGCTTCTATGGACAAAGCAGTGCCTTGCAATGAGTGTTCTAAGGAGCACCCCCTTATTCTTATTGCCCTTACGCGCCTTGTCATATTTGTTATAAGTGAATTTGATGAGGATAAGTGGGTTTGTACGTCTTGTGGTGGGAGCAGAGCAATGCTTAAGGCCAAGTATTGTAGCATTTGTAATAGCGTGAAACAGCACCGCTCATATGAATGCCCGAAGGACAAGGTTCTTGCTGCCAAGTATAAATTGGCCAGGGACAAGAGGCGTTCAGTTGTGCCAAATAGGATTCCCTATGACAGTGTCTATATACCAGAATCATCATCAGGAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.93

Weight (kDa)

8.49

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 405
AccII CGCG 1 cut(s) 280
AciI CCGC 3 cut(s) 134, 143, 403
AclWI GGATC 2 cut(s) 134, 147
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 4 cut(s) 95, 183, 197, 557
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 4 cut(s) 39, 88, 455, 556
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 2 cut(s) 134, 147
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 3 cut(s) 92, 363, 453
ApaI GGGCCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 5 cut(s) 8, 92, 93, 174, 188
AsuC2I CCSGG 2 cut(s) 96, 97
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 3 cut(s) 8, 174, 188
BaeGI GKGCMC 2 cut(s) 96, 102
BalI TGGCCA 1 cut(s) 455
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 424
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 4 cut(s) 41, 90, 457, 558
BcnI CCSGG 2 cut(s) 96, 97
BfaI CTAG 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 359
BglII AGATCT 1 cut(s) 534
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 6 cut(s) 41, 90, 96, 97, 457, 558
Bme18I GGWCC 3 cut(s) 8, 174, 188
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 5 cut(s) 8, 92, 93, 174, 188
BmiI GGNNCC 5 cut(s) 10, 94, 101, 141, 189
BmrFI CCNGG 6 cut(s) 41, 90, 96, 97, 457, 558
BmsI GCATC 1 cut(s) 196
BpuMI CCSGG 2 cut(s) 96, 97
BsaJI CCNNGG 5 cut(s) 40, 89, 95, 456, 557
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 183, 197, 557
Bse1I ACTGG 1 cut(s) 191
Bse3DI GCAATG 2 cut(s) 241, 360
BseBI CCWGG 4 cut(s) 41, 90, 457, 558
BseDI CCNNGG 5 cut(s) 40, 89, 95, 456, 557
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 4 cut(s) 95, 183, 197, 557
BseMI GCAATG 2 cut(s) 241, 360
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 2 cut(s) 540, 543
BseSI GKGCMC 2 cut(s) 96, 102
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 3 cut(s) 94, 365, 455
BshNI GGYRCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 2 cut(s) 201, 473
BslI CCNNNNNNNGG 4 cut(s) 95, 183, 197, 557
BsmFI GGGAC 2 cut(s) 201, 473
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 3 cut(s) 94, 365, 455
BsoBI CYCGRG 1 cut(s) 95
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 96, 102, 255
Bsp143I GATC 2 cut(s) 139, 534
BspACI CCGC 3 cut(s) 134, 143, 403
BspANI GGCC 3 cut(s) 94, 365, 455
BspCNI CTCAG 1 cut(s) 162
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 5 cut(s) 10, 94, 101, 141, 189
BspPI GGATC 2 cut(s) 134, 147
BspT107I GGYRCC 1 cut(s) 99
BspTI CTTAAG 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 241, 360
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 5 cut(s) 40, 89, 95, 456, 557
BssMI GATC 2 cut(s) 139, 534
Bst2UI CCWGG 4 cut(s) 41, 90, 457, 558
Bst4CI ACNGT 3 cut(s) 55, 80, 503
BstAFI CTTAAG 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 170, 246
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 2 cut(s) 142, 537
BstMBI GATC 2 cut(s) 139, 534
BstNI CCWGG 4 cut(s) 41, 90, 457, 558
BstSCI CCNGG 6 cut(s) 39, 88, 94, 95, 455, 556
BstSLI GKGCMC 2 cut(s) 96, 102
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 2 cut(s) 139, 534
BstYI RGATCY 2 cut(s) 139, 534
BsuRI GGCC 3 cut(s) 94, 365, 455
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 3 cut(s) 198, 231, 508
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 5 cut(s) 8, 92, 93, 174, 188
Cfr9I CCCGGG 1 cut(s) 95
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 330
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 579
CviJI RGCY 6 cut(s) 5, 21, 94, 197, 365, 455
CviKI_1 RGCY 6 cut(s) 5, 21, 94, 197, 365, 455
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 2 cut(s) 170, 246
DpnI GATC 2 cut(s) 141, 536
DpnII GATC 2 cut(s) 139, 534
EaeI YGGCCR 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 3 cut(s) 8, 174, 188
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 4 cut(s) 39, 88, 455, 556
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 582
FaqI GGGAC 2 cut(s) 201, 473
FatI CATG 1 cut(s) 578
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 438
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 3 cut(s) 94, 365, 455
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 282
Hin1II CATG 1 cut(s) 582
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 2 cut(s) 490, 518
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 528
Hpy8I GTNNAC 1 cut(s) 572
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 3 cut(s) 55, 80, 503
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 170, 246
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 1 cut(s) 582
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 139, 534
LmnI GCTCC 2 cut(s) 250, 345
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 332
MalI GATC 2 cut(s) 141, 536
MbiI CCGCTC 1 cut(s) 405
MboI GATC 2 cut(s) 139, 534
MflI RGATCY 2 cut(s) 139, 534
MhlI GDGCHC 3 cut(s) 96, 102, 255
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 2 cut(s) 305, 449
MluNI TGGCCA 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 6 cut(s) 130, 165, 307, 459, 561, 564
Mox20I TGGCCA 1 cut(s) 455
MroXI GAANNNNTTC 1 cut(s) 79
MscI TGGCCA 1 cut(s) 455
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 412
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 145
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 6 cut(s) 41, 90, 96, 97, 457, 558
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 4 cut(s) 41, 90, 457, 558
MvnI CGCG 1 cut(s) 280
NciI CCSGG 2 cut(s) 96, 97
NdeI CATATG 1 cut(s) 409
NdeII GATC 2 cut(s) 139, 534
NlaIII CATG 1 cut(s) 582
NlaIV GGNNCC 5 cut(s) 10, 94, 101, 141, 189
PctI GAATGC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 490, 518
PflFI GACNNNGTC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 1 cut(s) 439
PsiI TTATAA 1 cut(s) 299
Psp6I CCWGG 4 cut(s) 39, 88, 455, 556
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 4 cut(s) 39, 88, 455, 556
PspN4I GGNNCC 5 cut(s) 10, 94, 101, 141, 189
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 5 cut(s) 8, 92, 93, 174, 188
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 139, 534
PsyI GACNNNGTC 1 cut(s) 503
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 412
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 139, 534
Sau96I GGNCC 5 cut(s) 8, 92, 93, 174, 188
ScrFI CCNGG 6 cut(s) 41, 90, 96, 97, 457, 558
SduI GDGCHC 3 cut(s) 96, 102, 255
SetI ASST 7 cut(s) 23, 105, 132, 156, 176, 335, 432
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 3 cut(s) 8, 174, 188
SmaI CCCGGG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 412
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SrfI GCCCGGGC 1 cut(s) 97
Sse9I AATT 2 cut(s) 305, 449
SsiI CCGC 3 cut(s) 134, 143, 403
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 6 cut(s) 39, 88, 94, 95, 455, 556
TaaI ACNGT 3 cut(s) 55, 80, 503
TaiI ACGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 305, 449
TfiI GAWTC 2 cut(s) 490, 518
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 3 cut(s) 198, 231, 508
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 2 cut(s) 63, 426
TspMI CCCGGG 1 cut(s) 95
TspRI CASTG 3 cut(s) 198, 231, 508
Tth111I GACNNNGTC 1 cut(s) 503
Van91I CCANNNNNTGG 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 3 cut(s) 8, 174, 188
XapI RAATTY 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmaI CCCGGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 79
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.