FvH4_2g07000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001195
Physical Location & Seq
Reverse (-)
5765006 .. 5767333
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07000.t1

Sequence Viewer

Length: 615 bp
ATGGCTGAACCATCGGACGAGTGGGACGACACCGGCGATTCTCCGGGAGGTAGCTCCAGCTATATAGGCAAGGGTGCTCCAAAATTTGGAATTGAAGGACCAGACGGTCTGCCTTGTGAAAAGTGTCCTAAGGATATTCCCCTTTCTTTCTGCCCTCACTGGCCTTGTAATATCTGTTATAACGACCACTACCATCAAGTTTGCCCTTACTTCGACTTCTACCCACAGGGTGCACCTCTTAGCCCTTTCTATGACATAATTTGTTCCATGGGTCATCCATTTAATGAAGAGAAGTGGGTTTGTACCTCTTGTCCTGGGAACGAGGCAAGGATTAGTCTCAAGTATTGTCATATTTGTCACTGCAGGCTGCATGGTACGTATGAATGCCCCGAAGACAAGGTTGCTGCGGCCAAGTATAAATTGTTCAGAGACGAGATGTGTTCAAAAGTGTTTAAACTGAATCCTCCTAAGTCATCCTATGTTCCAACTCCTTCTCCTGGTGAGCTAAGAAACCCTAAAGCAGAGCCATTGTGGTGTTGCAGCAGCTGCAGAGCACTCTTAAGTACAACCAGTCTCAGATCTCATCTTCCTCAGAAACCATGGTCGTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

6.22

Isoelectric Point (pI)

61.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AasI GACNNNNNNGTC 1 cut(s) 105
AccB7I CCANNNNNTGG 1 cut(s) 86
AciI CCGC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 3 cut(s) 304, 376, 565
AfiI CCNNNNNNNGG 2 cut(s) 86, 497
AflII CTTAAG 1 cut(s) 559
AgsI TTSAA 2 cut(s) 95, 444
AjnI CCWGG 2 cut(s) 313, 496
AluBI AGCT 4 cut(s) 54, 60, 505, 546
AluI AGCT 4 cut(s) 54, 60, 505, 546
Alw21I GWGCWC 3 cut(s) 79, 235, 556
Alw26I GTCTC 3 cut(s) 341, 423, 578
Alw44I GTGCAC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 546
AoxI GGCC 2 cut(s) 161, 408
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 5 cut(s) 367, 404, 540, 543, 546
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 3 cut(s) 79, 235, 556
BbvI GCAGC 5 cut(s) 354, 391, 533, 552, 555
BccI CCATC 2 cut(s) 19, 201
BciT130I CCWGG 2 cut(s) 315, 498
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 3 cut(s) 341, 423, 578
BfmI CTRYAG 2 cut(s) 361, 547
BfrI CTTAAG 1 cut(s) 559
BglII AGATCT 1 cut(s) 578
BisI GCNGC 6 cut(s) 368, 405, 408, 541, 544, 547
BlsI GCNGC 6 cut(s) 369, 406, 409, 542, 545, 548
Bme1390I CCNGG 3 cut(s) 45, 315, 498
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 3 cut(s) 45, 315, 498
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 267, 314, 599
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 497
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 164, 570
Bse21I CCTNAGG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 315, 498
BseDI CCNNGG 3 cut(s) 267, 314, 599
BseGI GGATG 2 cut(s) 274, 473
BseLI CCNNNNNNNGG 2 cut(s) 86, 497
BseMII CTCAG 2 cut(s) 589, 605
BseNI ACTGG 2 cut(s) 164, 570
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 5 cut(s) 354, 391, 533, 552, 555
BshFI GGCC 2 cut(s) 163, 410
BsiHKAI GWGCWC 3 cut(s) 79, 235, 556
BsiSI CCGG 2 cut(s) 33, 44
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 86, 497
BsmAI GTCTC 3 cut(s) 341, 423, 578
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 2 cut(s) 163, 410
Bsp1286I GDGCHC 3 cut(s) 79, 235, 556
Bsp143I GATC 1 cut(s) 578
Bsp19I CCATGG 2 cut(s) 267, 599
BspACI CCGC 1 cut(s) 407
BspANI GGCC 2 cut(s) 163, 410
BspCNI CTCAG 2 cut(s) 588, 604
BspMAI CTGCAG 2 cut(s) 365, 551
BspTI CTTAAG 1 cut(s) 559
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 2 cut(s) 164, 570
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 267, 314, 599
BssMI GATC 1 cut(s) 578
BssT1I CCWWGG 2 cut(s) 267, 599
Bst2UI CCWGG 2 cut(s) 315, 498
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 559
BstAPI GCANNNNNTGC 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 6 cut(s) 129, 239, 468, 506, 575, 591
BstDSI CCRYGG 2 cut(s) 267, 599
BstF5I GGATG 2 cut(s) 274, 473
BstKTI GATC 1 cut(s) 581
BstMAI GTCTC 3 cut(s) 341, 423, 578
BstMBI GATC 1 cut(s) 578
BstMWI GCNNNNNNNGC 2 cut(s) 66, 546
BstNI CCWGG 2 cut(s) 315, 498
BstSCI CCNGG 3 cut(s) 43, 313, 496
BstSFI CTRYAG 2 cut(s) 361, 547
BstSLI GKGCMC 1 cut(s) 235
BstSNI TACGTA 1 cut(s) 378
BstV1I GCAGC 5 cut(s) 354, 391, 533, 552, 555
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 578
BstYI RGATCY 1 cut(s) 578
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 2 cut(s) 163, 410
BtgI CCRYGG 2 cut(s) 267, 599
BtsCI GGATG 2 cut(s) 274, 473
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 157, 358
Cac8I GCNNGC 1 cut(s) 365
CaiI CAGNNNCTG 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 3 cut(s) 303, 375, 564
CviAII CATG 3 cut(s) 268, 371, 600
CviQI GTAC 3 cut(s) 303, 375, 564
DdeI CTNAG 6 cut(s) 129, 239, 468, 506, 575, 591
DpnI GATC 1 cut(s) 580
DpnII GATC 1 cut(s) 578
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 230
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco105I TACGTA 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 267, 599
Eco47I GGWCC 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 313, 496
EcoT14I CCWWGG 2 cut(s) 267, 599
ErhI CCWWGG 2 cut(s) 267, 599
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 3 cut(s) 271, 374, 603
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 267, 370, 599
Fnu4HI GCNGC 6 cut(s) 368, 405, 408, 541, 544, 547
FokI GGATG 2 cut(s) 261, 460
Fsp4HI GCNGC 6 cut(s) 368, 405, 408, 541, 544, 547
GluI GCNGC 6 cut(s) 368, 405, 408, 541, 544, 547
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 2 cut(s) 163, 410
HapII CCGG 2 cut(s) 33, 44
Hin1II CATG 3 cut(s) 271, 374, 603
HinfI GANTC 2 cut(s) 38, 460
HpaII CCGG 2 cut(s) 33, 44
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 4 cut(s) 16, 428, 578, 594
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 89, 501
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 5 cut(s) 233, 363, 370, 540, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 546
HpyF3I CTNAG 6 cut(s) 129, 239, 468, 506, 575, 591
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 3 cut(s) 271, 374, 603
Kzo9I GATC 1 cut(s) 578
LmnI GCTCC 2 cut(s) 59, 82
Lsp1109I GCAGC 5 cut(s) 354, 391, 533, 552, 555
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 580
MboI GATC 1 cut(s) 578
MboII GAAGA 3 cut(s) 299, 404, 578
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 3 cut(s) 79, 235, 556
MluCI AATT 4 cut(s) 83, 90, 258, 419
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 7 cut(s) 41, 165, 246, 316, 316, 474, 600
MseI TTAA 3 cut(s) 282, 453, 560
MslI CAYNNNNRTG 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 559
MspI CCGG 2 cut(s) 33, 44
MspR9I CCNGG 3 cut(s) 45, 315, 498
MssI GTTTAAAC 1 cut(s) 454
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 315, 498
MwoI GCNNNNNNNGC 2 cut(s) 66, 546
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 2 cut(s) 267, 599
NdeII GATC 1 cut(s) 578
NlaIII CATG 3 cut(s) 271, 374, 603
NmuCI GTSAC 1 cut(s) 356
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 33
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 38, 460
PflMI CCANNNNNTGG 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 43
PkrI GCNGC 6 cut(s) 369, 406, 409, 542, 545, 548
PmeI GTTTAAAC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 378
PsiI TTATAA 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 313, 496
PspGI CCWGG 2 cut(s) 313, 496
PspPI GGNCC 1 cut(s) 98
PsrI GAACNNNNNNTAC 2 cut(s) 407, 439
PstI CTGCAG 2 cut(s) 365, 551
PstNI CAGNNNCTG 1 cut(s) 546
PsuI RGATCY 1 cut(s) 578
PvuII CAGCTG 1 cut(s) 546
RsaI GTAC 3 cut(s) 304, 376, 565
RsaNI GTAC 3 cut(s) 303, 375, 564
RseI CAYNNNNRTG 1 cut(s) 532
SaqAI TTAA 3 cut(s) 282, 453, 560
SatI GCNGC 6 cut(s) 368, 405, 408, 541, 544, 547
Sau3AI GATC 1 cut(s) 578
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 45, 315, 498
SduI GDGCHC 3 cut(s) 79, 235, 556
SetI ASST 9 cut(s) 52, 56, 62, 238, 308, 380, 402, 507, 548
SfcI CTRYAG 2 cut(s) 361, 547
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 532
SmlI CTYRAG 2 cut(s) 338, 559
SmoI CTYRAG 2 cut(s) 338, 559
SnaBI TACGTA 1 cut(s) 378
Sse9I AATT 4 cut(s) 83, 90, 258, 419
SsiI CCGC 1 cut(s) 407
StyD4I CCNGG 3 cut(s) 43, 313, 496
StyI CCWWGG 2 cut(s) 267, 599
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 213
TasI AATT 4 cut(s) 83, 90, 258, 419
TatI WGTACW 1 cut(s) 563
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 2 cut(s) 38, 460
Tru1I TTAA 3 cut(s) 282, 453, 560
Tru9I TTAA 3 cut(s) 282, 453, 560
TscAI CASTG 2 cut(s) 164, 365
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 5 cut(s) 367, 404, 540, 543, 546
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 300, 396
TspRI CASTG 2 cut(s) 164, 365
Van91I CCANNNNNTGG 1 cut(s) 86
Vha464I CTTAAG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.