Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

883130 .. 883691

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00814.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTGCTGAAACCGACGCGAGATGCCAGGGAGATGTAAGAAAGCTAGCCCTCTTCTTTGAGAAACTCGGCGCCTCTTCTCCTCCTGATACGAGAAAAAGTTCAGAAATTAGGTCCAACCCCGAAGGACCGGTGGCTAGAGGAGGTGCTTCTGTGGACAAACGACAATGTGTGCCCTGCAATGAGTGTTCTAAGTTGCACCCCCCTTATTTTGATCTGATTGCCCTTACTCTGTGGGCCCTTGTGATATTTGTGACAAGGTTCACCGCATTAATTGTTGCCCTTATCTCAACCATCTCCCAAAGGGGGCAACTTTTAACTCTGGGTATCGAATTGTTTGTGTACGTGGTTATTTATTTGATGAGGTTAAGTGGGCTTGTCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.04

Weight (kDa)

8.8

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	20
AciI	CCGC	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgeI	ACCGGT	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AoxI	GGCC	1 cut(s)	237
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	272
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	114, 128, 237, 238
AsuHPI	GGTGA	1 cut(s)	256
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	114, 128
BaeGI	GKGCMC	2 cut(s)	177, 241
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	241
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	29
BfaI	CTAG	2 cut(s)	47, 138
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	114, 128
BmgT120I	GGNCC	4 cut(s)	114, 128, 237, 238
BmiI	GGNNCC	2 cut(s)	73, 239
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	72, 156
BseSI	GKGCMC	2 cut(s)	177, 241
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	239
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	177, 241
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	73, 239
BspOI	GCTAGC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	59, 82
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	192, 384
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	2 cut(s)	177, 241
BstUI	CGCG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	4 cut(s)	114, 128, 237, 238
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	343
CspAI	ACCGGT	1 cut(s)	130
CviJI	RGCY	6 cut(s)	5, 46, 50, 137, 239, 376
CviKI_1	RGCY	6 cut(s)	5, 46, 50, 137, 239, 376
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	192, 384
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	59, 82
EarI	CTCTTC	2 cut(s)	59, 82
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	114, 128
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
FaqI	GGGAC	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	47, 138
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	3 cut(s)	157, 264, 343
Hpy188I	TCNGA	2 cut(s)	106, 219
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	3 cut(s)	157, 264, 343
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	180, 199
HpyF3I	CTNAG	2 cut(s)	192, 384
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	14, 41, 99, 144, 190, 308
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	47, 138
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	46, 69
MhlI	GDGCHC	2 cut(s)	177, 241
MluCI	AATT	3 cut(s)	108, 273, 332
Mly113I	GGCGCC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	62, 85, 93, 134, 137, 357
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	3 cut(s)	272, 317, 368
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	20
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	1 cut(s)	214
NheI	GCTAGC	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	73, 239
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	7
PluTI	GGCGCC	1 cut(s)	75
Ppu21I	YACGTR	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	73, 239
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	4 cut(s)	114, 128, 237, 238
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	272, 317, 368
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	4 cut(s)	114, 128, 237, 238
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	177, 241
SetI	ASST	6 cut(s)	48, 116, 148, 263, 348, 368
SfaNI	GCATC	1 cut(s)	14
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	2 cut(s)	114, 128
Sse9I	AATT	3 cut(s)	108, 273, 332
SsiI	CCGC	1 cut(s)	267
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	47, 138
StyD4I	CCNGG	1 cut(s)	27
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	330
TasI	AATT	3 cut(s)	108, 273, 332
Tru1I	TTAA	3 cut(s)	272, 317, 368
Tru9I	TTAA	3 cut(s)	272, 317, 368
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	114, 128
VspI	ATTAAT	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	2 cut(s)	47, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.