FvH4_2g00840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001195
Physical Location & Seq
Reverse (-)
884595 .. 886147
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00840.t1

Sequence Viewer

Length: 759 bp
ATGGCTGGACCCGACGTGAGAAAGCTAGCCCTCTTCTTTGAGACTCTCGCCGCCTCTTCTCCTCCTGATAAGAGAAAAAGTTCAGAAATCATCAATCGAAAAGGTTGCAGAGGATCCGCTGGTTCAGGCACCTATACAGTCTATACTCCTGTCGTCTTCATGGGGCAGAATGACTTTGGAGGACCGGTGGCTAGGGGAGGTGCTTCTGTGGACAAACGACAATGTGTGCCCTGCAATGAGTGTTTTAACTCGCACCCCCCTTATTCTTATTGCCCTTACACCCCTTGTGATATTTGTGACAAGGTTCACGACTCTGCTCGTTGCCCTTACTTCGACCATCTCCCACAAGGGGCAACTTTTCCCCCTGGATATGAAATAGTTTGTCGATGCGGTAATTTATTTAATGAGGATAAGTGGGCTTGTAGCTCTTGTGGTGGGAGCATTCCAGTGCTTAAGGCCAAGTATTGTTCCATTTGTAACGTCTATTATCAGCACGGTGTATATGAATGCCCAGTGGACAAGGAACATGCTGCCAAGTATAAATCGGTCAGAGACGAGATGCTTTCACGTGTGCCGATTCCCCATCGCCCTGTCTATCCAGAATCATCATCAGGAATTCCCTATGTTCCAACTACTCCTTCCTCGTCGGTTTGTGGAGACATGAAAGAAGGCAAGGACCCCGTCTATATTCCAGAATCATCATCAGGAATGACCTATTCTCCAACTGCTCCTTCTTGGGTTTGTGGAGACATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.5

Weight (kDa)

7.41

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 3 cut(s) 51, 117, 390
AclWI GGATC 2 cut(s) 108, 121
AcsI RAATTY 1 cut(s) 615
AcvI CACGTG 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 349
AflII CTTAAG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 568
AgeI ACCGGT 1 cut(s) 184
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 4 cut(s) 622, 654, 715, 747
AluBI AGCT 2 cut(s) 25, 426
AluI AGCT 2 cut(s) 25, 426
Alw26I GTCTC 4 cut(s) 35, 546, 651, 741
AlwI GGATC 2 cut(s) 108, 121
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 1 cut(s) 615
AsiGI ACCGGT 1 cut(s) 184
Asp700I GAANNNNTTC 1 cut(s) 79
AspS9I GGNCC 3 cut(s) 8, 182, 676
AsuNHI GCTAGC 1 cut(s) 25
AvaII GGWCC 3 cut(s) 8, 182, 676
BaeGI GKGCMC 1 cut(s) 231
BamHI GGATCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 128
BbrPI CACGTG 1 cut(s) 569
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 517
BccI CCATC 2 cut(s) 345, 591
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 4 cut(s) 35, 546, 651, 741
BfaI CTAG 2 cut(s) 26, 192
BfrI CTTAAG 1 cut(s) 452
BisI GCNGC 2 cut(s) 51, 531
BlsI GCNGC 2 cut(s) 52, 532
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 3 cut(s) 8, 182, 676
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 3 cut(s) 8, 182, 676
BmiI GGNNCC 4 cut(s) 10, 115, 130, 678
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 2 cut(s) 377, 549
BmtI GCTAGC 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 506
BpiI GAAGAC 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 171, 201, 703, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 446, 512
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 446, 512
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 1 cut(s) 517
BshFI GGCC 1 cut(s) 458
BshNI GGYRCC 1 cut(s) 128
BshTI ACCGGT 1 cut(s) 184
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 4 cut(s) 35, 546, 651, 741
BsmBI CGTCTC 1 cut(s) 546
BsmI GAATGC 2 cut(s) 441, 512
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 3 cut(s) 51, 117, 390
BspANI GGCC 1 cut(s) 458
BspLI GGNNCC 4 cut(s) 10, 115, 130, 678
BspOI GCTAGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 108, 121
BspT107I GGYRCC 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 2 cut(s) 446, 512
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 139, 497
Bst6I CTCTTC 2 cut(s) 38, 61
BstAFI CTTAAG 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 4 cut(s) 35, 546, 651, 741
BstMBI GATC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 569
BtrI CACGTC 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 453, 519
Cac8I GCNNGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 3 cut(s) 8, 182, 676
CspAI ACCGGT 1 cut(s) 184
CviAII CATG 4 cut(s) 160, 527, 661, 751
CviJI RGCY 7 cut(s) 5, 25, 29, 191, 419, 426, 458
CviKI_1 RGCY 7 cut(s) 5, 25, 29, 191, 419, 426, 458
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 38, 61
EarI CTCTTC 2 cut(s) 38, 61
Eco47I GGWCC 3 cut(s) 8, 182, 676
Eco72I CACGTG 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 546
FaeI CATG 4 cut(s) 163, 530, 664, 754
FatI CATG 4 cut(s) 159, 526, 660, 750
Fnu4HI GCNGC 2 cut(s) 51, 531
Fsp4HI GCNGC 2 cut(s) 51, 531
FspBI CTAG 2 cut(s) 26, 192
GluI GCNGC 2 cut(s) 51, 531
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 185
Hin1II CATG 4 cut(s) 163, 530, 664, 754
HinfI GANTC 5 cut(s) 43, 311, 577, 602, 695
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 211, 307, 517
Hpy188I TCNGA 2 cut(s) 85, 551
Hpy188III TCNNGA 6 cut(s) 65, 308, 599, 612, 692, 705
Hpy8I GTNNAC 3 cut(s) 211, 307, 517
Hpy99I CGWCG 2 cut(s) 17, 649
HpyAV CCTTC 3 cut(s) 648, 662, 741
HpyCH4III ACNGT 2 cut(s) 139, 497
HpyCH4IV ACGT 3 cut(s) 15, 480, 568
HpyCH4V TGCA 2 cut(s) 108, 234
HpySE526I ACGT 3 cut(s) 15, 480, 568
Hsp92II CATG 4 cut(s) 163, 530, 664, 754
Kzo9I GATC 1 cut(s) 113
LmnI GCTCC 2 cut(s) 438, 733
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 2 cut(s) 377, 549
MaeI CTAG 2 cut(s) 26, 192
MaeII ACGT 3 cut(s) 15, 480, 568
MaeIII GTNAC 2 cut(s) 296, 476
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 3 cut(s) 25, 48, 148
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 394, 615
MlyI GAGTC 2 cut(s) 37, 305
MmeI TCCRAC 2 cut(s) 653, 746
MnlI CCTC 8 cut(s) 41, 64, 72, 104, 173, 191, 400, 652
MroXI GAANNNNTTC 1 cut(s) 79
MseI TTAA 3 cut(s) 246, 402, 453
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 2 cut(s) 441, 512
MvaI CCWGG 1 cut(s) 366
NdeII GATC 1 cut(s) 113
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 163, 530, 664, 754
NlaIV GGNNCC 4 cut(s) 10, 115, 130, 678
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 530
PctI GAATGC 2 cut(s) 441, 512
PdmI GAANNNNTTC 1 cut(s) 79
PfeI GAWTC 3 cut(s) 577, 602, 695
PflFI GACNNNGTC 1 cut(s) 680
PinAI ACCGGT 1 cut(s) 184
PkrI GCNGC 2 cut(s) 52, 532
PleI GAGTC 2 cut(s) 37, 305
PmaCI CACGTG 1 cut(s) 569
PmlI CACGTG 1 cut(s) 569
PpsI GAGTC 2 cut(s) 37, 305
Ppu21I YACGTR 1 cut(s) 569
PpuMI RGGWCCY 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 364
PspCI CACGTG 1 cut(s) 569
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 10, 115, 130, 678
PspPI GGNCC 3 cut(s) 8, 182, 676
PspPPI RGGWCCY 1 cut(s) 676
PsuI RGATCY 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 680
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 3 cut(s) 246, 402, 453
SatI GCNGC 2 cut(s) 51, 531
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 3 cut(s) 8, 182, 676
SchI GAGTC 2 cut(s) 37, 305
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 377, 549
SinI GGWCC 3 cut(s) 8, 182, 676
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 2 cut(s) 394, 615
SsiI CCGC 3 cut(s) 51, 117, 390
SspMI CTAG 2 cut(s) 26, 192
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 139, 497
TaiI ACGT 3 cut(s) 18, 483, 571
TaqI TCGA 3 cut(s) 97, 333, 385
TaqII GACCGA 1 cut(s) 535
TasI AATT 2 cut(s) 394, 615
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 3 cut(s) 577, 602, 695
Tru1I TTAA 3 cut(s) 246, 402, 453
Tru9I TTAA 3 cut(s) 246, 402, 453
TscAI CASTG 2 cut(s) 453, 519
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 4 cut(s) 148, 387, 519, 677
TspRI CASTG 2 cut(s) 453, 519
Tth111I GACNNNGTC 1 cut(s) 680
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 3 cut(s) 8, 182, 676
XapI RAATTY 1 cut(s) 615
XceI RCATGY 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 79
XspI CTAG 2 cut(s) 26, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.