Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

896184 .. 897756

Gene Structure 1573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTGCTGAAACCGACGCGAGATGCCAGGGAGATGTAAGAAAGCTAGCCCTCTTCTTTGAGAAACTCGGCGCCTCTTCTCCTCCTGATACGAAAAAAAGTTCAGAAATCATCAATCGAAAAGGATGCGGAGGATCCGCTGGTTCAGGCACCTATACAGGCTATACTCCTGTCGTCTTCATGGGGCAGAATGACTTCGGAGGACCAGTGGCTAGGGGAGGTGCTTCTGTGGACAAACGACAATGTGTGCCCTGCAATGAGTGTTCTAAGTCGCACCCCCTTTATTCTTATTGCCCTTACACCCCTTGTGATATTTGTGACAAGGTTCACGACTCTGAGTGTTGCCCTTACTTCGACCATCTCCCACAAGGGGCAACTTTTCCCCCTGGATATGAAATAGTTTGTCGATGCGGTAATTTATTTAATGAGGATAAGTGGGCTTGTAGCTCTTGTAGTGGGAGCATTCCAGTGCTTGCGGCCAAGTATTGTTCCATTTGTAATGTCTATTATCAGCACAGTGTATATGAATGCCCAGTGGACAAGGAACGTGCTGCCAAGTATAAATTGGTCAGAGCCGAGATGCTTTCACGTGTGCCGATTCCCCATCGTCCTGTCTATCCAGAATCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

22.96

Weight (kDa)

7.4

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 149
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	129, 138, 411, 476
AclWI	GGATC	2 cut(s)	129, 142
AcoI	YGGCCR	1 cut(s)	477
AcvI	CACGTG	1 cut(s)	590
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflIII	ACRYGT	1 cut(s)	589
AjnI	CCWGG	2 cut(s)	27, 385
AluBI	AGCT	2 cut(s)	46, 447
AluI	AGCT	2 cut(s)	46, 447
AlwI	GGATC	2 cut(s)	129, 142
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	2 cut(s)	5, 551
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	71, 149
BbrPI	CACGTG	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	2 cut(s)	366, 612
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	2 cut(s)	29, 387
BfaI	CTAG	2 cut(s)	47, 213
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	3 cut(s)	6, 477, 552
BlsI	GCNGC	3 cut(s)	7, 478, 553
Bme1390I	CCNGG	2 cut(s)	29, 387
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	3 cut(s)	73, 136, 151
BmrFI	CCNGG	2 cut(s)	29, 387
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	4 cut(s)	14, 116, 398, 570
BmtI	GCTAGC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	28, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	3 cut(s)	206, 467, 533
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	29, 387
BseDI	CCNNGG	2 cut(s)	28, 385
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	3 cut(s)	206, 467, 533
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	479
BshNI	GGYRCC	2 cut(s)	71, 149
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmI	GAATGC	2 cut(s)	462, 533
BsnI	GGCC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	4 cut(s)	129, 138, 411, 476
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	629
BspLI	GGNNCC	3 cut(s)	73, 136, 151
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	129, 142
BspT107I	GGYRCC	2 cut(s)	71, 149
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	206, 467, 533
BssECI	CCNNGG	2 cut(s)	28, 385
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	29, 387
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	59, 82
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	48, 474
BstDEI	CTNAG	2 cut(s)	267, 336
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	29, 387
BstSCI	CCNGG	2 cut(s)	27, 385
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	4 cut(s)	213, 474, 523, 540
Cac8I	GCNNGC	2 cut(s)	48, 474
CciI	TCATGA	1 cut(s)	629
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	26
CviAII	CATG	2 cut(s)	181, 630
CviJI	RGCY	9 cut(s)	5, 46, 50, 162, 212, 440, 447, 479, 575
CviKI_1	RGCY	9 cut(s)	5, 46, 50, 162, 212, 440, 447, 479, 575
DdeI	CTNAG	2 cut(s)	267, 336
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	59, 82
EarI	CTCTTC	2 cut(s)	59, 82
Eco47I	GGWCC	1 cut(s)	203
Eco72I	CACGTG	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	27, 385
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
FaeI	CATG	2 cut(s)	184, 633
FaiI	YATR	8 cut(s)	156, 165, 182, 393, 523, 525, 561, 631
FatI	CATG	2 cut(s)	180, 629
Fnu4HI	GCNGC	3 cut(s)	6, 477, 552
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	6, 477, 552
FspBI	CTAG	2 cut(s)	47, 213
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	6, 477, 552
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	479
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	184, 633
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	332, 598, 623
Hpy166II	GTNNAC	3 cut(s)	232, 328, 538
Hpy188I	TCNGA	4 cut(s)	106, 200, 337, 572
Hpy188III	TCNNGA	4 cut(s)	86, 329, 620, 630
Hpy8I	GTNNAC	3 cut(s)	232, 328, 538
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	2 cut(s)	547, 589
HpyCH4V	TGCA	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	267, 336
HpySE526I	ACGT	2 cut(s)	547, 589
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	184, 633
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	459
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	4 cut(s)	14, 116, 398, 570
MaeI	CTAG	2 cut(s)	47, 213
MaeII	ACGT	2 cut(s)	547, 589
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	3 cut(s)	46, 69, 169
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	415, 563
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	7 cut(s)	62, 85, 93, 125, 194, 212, 421
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	29, 387
Mva1269I	GAATGC	2 cut(s)	462, 533
MvaI	CCWGG	2 cut(s)	29, 387
MvnI	CGCG	1 cut(s)	20
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	1 cut(s)	134
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	184, 633
NlaIV	GGNNCC	3 cut(s)	73, 136, 151
NmeAIII	GCCGAG	2 cut(s)	48, 601
NmuCI	GTSAC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	629
PctI	GAATGC	2 cut(s)	462, 533
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	598, 623
PkrI	GCNGC	3 cut(s)	7, 478, 553
PleI	GAGTC	1 cut(s)	326
PluTI	GGCGCC	1 cut(s)	75
PmaCI	CACGTG	1 cut(s)	590
PmlI	CACGTG	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	590
Psp6I	CCWGG	2 cut(s)	27, 385
PspCI	CACGTG	1 cut(s)	590
PspGI	CCWGG	2 cut(s)	27, 385
PspN4I	GGNNCC	3 cut(s)	73, 136, 151
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	3 cut(s)	6, 477, 552
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	29, 387
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	7 cut(s)	48, 155, 223, 327, 449, 550, 592
SfaNI	GCATC	4 cut(s)	14, 116, 398, 570
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	2 cut(s)	415, 563
SsiI	CCGC	4 cut(s)	129, 138, 411, 476
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	47, 213
StyD4I	CCNGG	2 cut(s)	27, 385
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	2 cut(s)	550, 592
TaqI	TCGA	3 cut(s)	118, 354, 406
TasI	AATT	2 cut(s)	415, 563
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	598, 623
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	4 cut(s)	213, 474, 523, 540
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	5, 551
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	3 cut(s)	169, 408, 540
TspRI	CASTG	4 cut(s)	213, 474, 523, 540
VpaK11BI	GGWCC	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	2 cut(s)	47, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.