Rh5BG393700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001195
Physical Location & Seq
Reverse (-)
63293799 .. 63333476
39678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG393700.1

Sequence Viewer

Length: 258 bp
ATGGCTGGACCCGACGCAAGCTGTGTGAATGAGATCTGCCAGGGAGATGAATTTGTTTCAAAAGGCGTAAGAAACCTGGCCATCTTCTTTGAGACTCTCGGCGCCTCTTCTCCGGATACAAGGAAACAGTTCAGTTCCAGGGCCCGGGCACCTAGTTCTAAAATCAGCAATCGAAAAGGTTGCGGAGGATCCACTGGTTCAGGTTTTGCCTTAGGTATTGGGGTTTTCTGCTTAAGTTGTTCCCGTTTAGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

8.81

Weight (kDa)

9.04

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 101, 148
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 1 cut(s) 183
AclWI GGATC 2 cut(s) 183, 196
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 232
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 3 cut(s) 39, 75, 137
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 183, 196
Ama87I CYCGRG 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 2 cut(s) 78, 141
ApaI GGGCCC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 3 cut(s) 8, 141, 142
AsuC2I CCSGG 2 cut(s) 145, 146
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 211
BaeGI GKGCMC 2 cut(s) 145, 151
BalI TGGCCA 1 cut(s) 80
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 2 cut(s) 101, 148
BanII GRGCYC 1 cut(s) 145
BccI CCATC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 3 cut(s) 41, 77, 139
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 145, 146
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 232
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 1 cut(s) 33
Bme1390I CCNGG 5 cut(s) 41, 77, 139, 145, 146
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 3 cut(s) 8, 141, 142
BmiI GGNNCC 5 cut(s) 10, 103, 143, 150, 190
BmrFI CCNGG 5 cut(s) 41, 77, 139, 145, 146
BpuMI CCSGG 2 cut(s) 145, 146
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 40, 138, 144
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 3 cut(s) 41, 77, 139
BseDI CCNNGG 3 cut(s) 40, 138, 144
BseLI CCNNNNNNNGG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 2 cut(s) 145, 151
BshFI GGCC 2 cut(s) 80, 143
BshNI GGYRCC 2 cut(s) 101, 148
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 113, 145
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 2 cut(s) 80, 143
BsoBI CYCGRG 1 cut(s) 144
Bsp120I GGGCCC 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 145, 151
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 33, 188
BspACI CCGC 1 cut(s) 183
BspANI GGCC 2 cut(s) 80, 143
BspEI TCCGGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 10, 103, 143, 150, 190
BspPI GGATC 2 cut(s) 183, 196
BspT107I GGYRCC 2 cut(s) 101, 148
BspTI CTTAAG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 40, 138, 144
BssMI GATC 2 cut(s) 33, 188
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 3 cut(s) 41, 77, 139
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 36, 191
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 33, 188
BstNI CCWGG 3 cut(s) 41, 77, 139
BstSCI CCNGG 5 cut(s) 39, 75, 137, 143, 144
BstSLI GKGCMC 2 cut(s) 145, 151
BstX2I RGATCY 2 cut(s) 33, 188
BstYI RGATCY 2 cut(s) 33, 188
Bsu36I CCTNAGG 1 cut(s) 211
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 80, 143
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 8, 141, 142
Cfr9I CCCGGG 1 cut(s) 144
CseI GACGC 1 cut(s) 23
CviJI RGCY 4 cut(s) 5, 21, 80, 143
CviKI_1 RGCY 4 cut(s) 5, 21, 80, 143
DdeI CTNAG 1 cut(s) 211
DinI GGCGCC 1 cut(s) 103
DpnI GATC 2 cut(s) 35, 190
DpnII GATC 2 cut(s) 33, 188
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 3 cut(s) 39, 75, 137
EcoT38I GRGCYC 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 145
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 80, 143
HapII CCGG 2 cut(s) 113, 145
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 113, 145
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 129
HpyF3I CTNAG 1 cut(s) 211
Hsp92I GRCGYC 1 cut(s) 102
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 33, 188
MaeI CTAG 1 cut(s) 153
MalI GATC 2 cut(s) 35, 190
MboI GATC 2 cut(s) 33, 188
MboII GAAGA 2 cut(s) 76, 99
MflI RGATCY 2 cut(s) 33, 188
MhlI GDGCHC 2 cut(s) 145, 151
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 2 cut(s) 50, 253
MluNI TGGCCA 1 cut(s) 80
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 2 cut(s) 115, 179
Mox20I TGGCCA 1 cut(s) 80
MroI TCCGGA 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 80
MseI TTAA 3 cut(s) 233, 252, 256
Msp20I TGGCCA 1 cut(s) 80
MspCI CTTAAG 1 cut(s) 232
MspI CCGG 2 cut(s) 113, 145
MspR9I CCNGG 5 cut(s) 41, 77, 139, 145, 146
MvaI CCWGG 3 cut(s) 41, 77, 139
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 2 cut(s) 145, 146
NdeII GATC 2 cut(s) 33, 188
NlaIV GGNNCC 5 cut(s) 10, 103, 143, 150, 190
NmeAIII GCCGAG 1 cut(s) 78
PacI TTAATTAA 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 128
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 3 cut(s) 39, 75, 137
PspGI CCWGG 3 cut(s) 39, 75, 137
PspN4I GGNNCC 5 cut(s) 10, 103, 143, 150, 190
PspOMI GGGCCC 1 cut(s) 141
PspPI GGNCC 3 cut(s) 8, 141, 142
PsuI RGATCY 2 cut(s) 33, 188
SaqAI TTAA 3 cut(s) 233, 252, 256
Sau3AI GATC 2 cut(s) 33, 188
Sau96I GGNCC 3 cut(s) 8, 141, 142
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 5 cut(s) 41, 77, 139, 145, 146
SduI GDGCHC 2 cut(s) 145, 151
SetI ASST 6 cut(s) 23, 78, 154, 181, 205, 217
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 1 cut(s) 8
SmaI CCCGGG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SrfI GCCCGGGC 1 cut(s) 146
Sse9I AATT 2 cut(s) 50, 253
SsiI CCGC 1 cut(s) 183
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 5 cut(s) 39, 75, 137, 143, 144
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 50, 253
Tru1I TTAA 3 cut(s) 233, 252, 256
Tru9I TTAA 3 cut(s) 233, 252, 256
TscAI CASTG 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 63
TspMI CCCGGG 1 cut(s) 144
TspRI CASTG 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 50
XmaI CCCGGG 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.