FvH4_4g12110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001195
Physical Location & Seq
Forward (+)
15802927 .. 15805217
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12110.t1

Sequence Viewer

Length: 741 bp
ATGGCTGCATCCGACGCGATCTCCCAGAGTGATGTTAAAAAGCTTGCCCTTTCCTTTGAGACTCTCGACGCCTCTTCTCCCGATACAAGGAAACCGCTCAGTTCCGGTTCTGAAAGCAGCAATCGAAAAGGCCCCTATACTCCTGTCTTGTTCGGATCCAAGTTCAGAGAACCAGTGGCCGGTGGAGATGCTTCTATGAACAAAGGACCATTAAGTGACAATGAGGGTTCTAAGGTGAACTCCAAACAAACAGTCATCTGTACTCCTGTTGACTGTAGTTCCAATTTCAGAGGTCCAGTGGCTGGTGGAGTTGCTTCTACGGATGAAGGACCATGTCTGCGTTGCGATGTGTGTTCTAAGGAGCACCCCCTTTGTGATATTTGTTATAAGGTTCACCACTATGAGCTTTGCCCTTACTTCCACCGTGTTCCACAGGGTGCAACTTTTGACCCTGGCTATGAAATAATTTGTGGATGTGGTAATATATTTAATGAGGATAAGTGGGCTTGTACCTTTTGTGGTGGGAGCATAGCAATGCTAAAGGCGAAGTATTGTGACATTTGTCGTAGCTGGAAATTGCACAGCACATATGAATGCCTGAAGGACGAGGTTCGTGCTGCCATGTATAAATCGGACAGAGATAAGCAGCTTTCACTTGTGCGGAAATGGATTCCTTATGTTTCAAAATCATCATCTGGAAAGTTGTGTGTTCCAACTATTCCTGGTTTTGTGGACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

26.8

Weight (kDa)

7.83

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AccB7I CCANNNNNTGG 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 97
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 95, 661
AclWI GGATC 2 cut(s) 150, 163
AcoI YGGCCR 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 2 cut(s) 262, 511
AfiI CCNNNNNNNGG 3 cut(s) 87, 179, 302
AgsI TTSAA 1 cut(s) 684
AjnI CCWGG 2 cut(s) 451, 721
AluBI AGCT 4 cut(s) 43, 406, 570, 649
AluI AGCT 4 cut(s) 43, 406, 570, 649
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 150, 163
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 2 cut(s) 130, 177
ApeKI GCWGC 4 cut(s) 5, 117, 617, 646
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspS9I GGNCC 4 cut(s) 131, 206, 293, 329
AsuHPI GGTGA 2 cut(s) 247, 386
AvaII GGWCC 3 cut(s) 206, 293, 329
BamHI GGATCC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 129, 604, 658
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 2 cut(s) 453, 723
BcoDI GTCTC 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 274
BisI GCNGC 4 cut(s) 6, 118, 618, 647
BlsI GCNGC 4 cut(s) 7, 119, 619, 648
Bme1390I CCNGG 2 cut(s) 453, 723
Bme18I GGWCC 3 cut(s) 206, 293, 329
BmgT120I GGNCC 4 cut(s) 131, 206, 293, 329
BmiI GGNNCC 2 cut(s) 133, 157
BmrFI CCNGG 2 cut(s) 453, 723
BmsI GCATC 2 cut(s) 17, 178
BoxI GACNNNNGTC 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 179, 302
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 173, 296
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 2 cut(s) 453, 723
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 3 cut(s) 8, 328, 479
BseLI CCNNNNNNNGG 3 cut(s) 87, 179, 302
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 2 cut(s) 173, 296
BseXI GCAGC 3 cut(s) 129, 604, 658
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 132, 179
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 105, 180
BslI CCNNNNNNNGG 3 cut(s) 87, 179, 302
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 2 cut(s) 132, 179
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 18, 155
BspACI CCGC 2 cut(s) 95, 661
BspANI GGCC 2 cut(s) 132, 179
BspCNI CTCAG 1 cut(s) 111
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 133, 157
BspPI GGATC 2 cut(s) 150, 163
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 173, 296
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 18, 155
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 453, 723
Bst4CI ACNGT 3 cut(s) 253, 275, 425
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 3 cut(s) 98, 231, 357
BstF5I GGATG 3 cut(s) 8, 328, 479
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 21, 158
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 18, 155
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 453, 723
BstPAI GACNNNNGTC 1 cut(s) 561
BstSCI CCNGG 2 cut(s) 451, 721
BstSFI CTRYAG 1 cut(s) 274
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 129, 604, 658
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 132, 179
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 3 cut(s) 8, 328, 479
BtsIMutI CAGTG 2 cut(s) 180, 303
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 4 cut(s) 131, 206, 293, 329
CseI GACGC 2 cut(s) 23, 77
Csp6I GTAC 2 cut(s) 261, 510
CviAII CATG 3 cut(s) 333, 622, 738
CviQI GTAC 2 cut(s) 261, 510
DdeI CTNAG 3 cut(s) 98, 231, 357
DpnI GATC 2 cut(s) 20, 157
DpnII GATC 2 cut(s) 18, 155
DraIII CACNNNGTG 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco47I GGWCC 3 cut(s) 206, 293, 329
Eco57I CTGAAG 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 451, 721
FaeI CATG 3 cut(s) 336, 625, 741
FatI CATG 3 cut(s) 332, 621, 737
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 4 cut(s) 6, 118, 618, 647
FokI GGATG 2 cut(s) 335, 486
Fsp4HI GCNGC 4 cut(s) 6, 118, 618, 647
GluI GCNGC 4 cut(s) 6, 118, 618, 647
HaeIII GGCC 2 cut(s) 132, 179
HapII CCGG 2 cut(s) 105, 180
HgaI GACGC 2 cut(s) 23, 77
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 336, 625, 741
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 2 cut(s) 61, 670
HpaII CCGG 2 cut(s) 105, 180
HphI GGTGA 2 cut(s) 247, 386
Hpy166II GTNNAC 4 cut(s) 238, 271, 394, 733
Hpy188I TCNGA 6 cut(s) 13, 112, 155, 167, 290, 634
Hpy188III TCNNGA 3 cut(s) 65, 80, 696
Hpy8I GTNNAC 4 cut(s) 238, 271, 394, 733
Hpy99I CGWCG 2 cut(s) 17, 71
HpyAV CCTTC 2 cut(s) 320, 595
HpyCH4III ACNGT 3 cut(s) 253, 275, 425
HpyCH4V TGCA 3 cut(s) 8, 440, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 98, 231, 357
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 336, 625, 741
Kzo9I GATC 2 cut(s) 18, 155
LmnI GCTCC 2 cut(s) 361, 525
Lsp1109I GCAGC 3 cut(s) 129, 604, 658
LweI GCATC 2 cut(s) 17, 178
MaeIII GTNAC 2 cut(s) 215, 554
MalI GATC 2 cut(s) 20, 157
MbiI CCGCTC 1 cut(s) 97
MboI GATC 2 cut(s) 18, 155
MboII GAAGA 1 cut(s) 66
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 3 cut(s) 283, 465, 575
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 2 cut(s) 36, 737
MnlI CCTC 5 cut(s) 82, 217, 284, 487, 601
MseI TTAA 3 cut(s) 36, 212, 489
MslI CAYNNNNRTG 3 cut(s) 399, 533, 592
MspI CCGG 2 cut(s) 105, 180
MspR9I CCNGG 2 cut(s) 453, 723
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 2 cut(s) 453, 723
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 589
NdeII GATC 2 cut(s) 18, 155
NlaIII CATG 3 cut(s) 336, 625, 741
NlaIV GGNNCC 2 cut(s) 133, 157
NmuCI GTSAC 2 cut(s) 215, 554
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 670
PflFI GACNNNGTC 1 cut(s) 333
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 4 cut(s) 7, 119, 619, 648
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 561
PsiI TTATAA 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 451, 721
PspGI CCWGG 2 cut(s) 451, 721
PspN4I GGNNCC 2 cut(s) 133, 157
PspPI GGNCC 4 cut(s) 131, 206, 293, 329
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 333
RsaI GTAC 2 cut(s) 262, 511
RsaNI GTAC 2 cut(s) 261, 510
RseI CAYNNNNRTG 3 cut(s) 399, 533, 592
SaqAI TTAA 3 cut(s) 36, 212, 489
SatI GCNGC 4 cut(s) 6, 118, 618, 647
Sau3AI GATC 2 cut(s) 18, 155
Sau96I GGNCC 4 cut(s) 131, 206, 293, 329
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 453, 723
SduI GDGCHC 1 cut(s) 366
SetI ASST 9 cut(s) 45, 237, 295, 393, 408, 515, 572, 612, 651
SfaNI GCATC 2 cut(s) 17, 178
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 3 cut(s) 206, 293, 329
SmiMI CAYNNNNRTG 3 cut(s) 399, 533, 592
Sse9I AATT 3 cut(s) 283, 465, 575
SsiI CCGC 2 cut(s) 95, 661
StyD4I CCNGG 2 cut(s) 451, 721
TaaI ACNGT 3 cut(s) 253, 275, 425
TaqI TCGA 2 cut(s) 66, 124
TasI AATT 3 cut(s) 283, 465, 575
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 3 cut(s) 36, 212, 489
Tru9I TTAA 3 cut(s) 36, 212, 489
TscAI CASTG 2 cut(s) 180, 303
TseFI GTSAC 2 cut(s) 215, 554
TseI GCWGC 4 cut(s) 5, 117, 617, 646
Tsp45I GTSAC 2 cut(s) 215, 554
TspDTI ATGAA 4 cut(s) 212, 339, 474, 606
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 2 cut(s) 180, 303
Tth111I GACNNNGTC 1 cut(s) 333
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 3 cut(s) 206, 293, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.