Rh5DG409100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001195
Physical Location & Seq
Reverse (-)
64779874 .. 64781335
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG409100.1

Sequence Viewer

Length: 819 bp
ATGGCTGGACCCGACGCAAGCTGTGTGGATGAGATCTGCCATCTCCCTATGAACCCTAGGGAGATGAAACTGTTTCAAAAGGCTTCGCAAACTGTTTCAAAGTACTTGTTGCTCACTAATCTTCCTTGTACTAATCTGGAATTTCTTGCCAGATACAAGGAAACAGTTCAGTTCCAGGGCCCGGCACCTAGTTCTAAAACCAGCAATCGAAAAGGTTGCGGAGGATCCACTGGTTCAGGTTTTGCCTTAGGTATTGGGAACTGCAAACAAGCAGGCACCTATACGTATACTCCTGTCGACTTCAGTTCCAAGTTCAGAGGACCAGTGGCTGGTGGAGGCCCTTCTATGGACAAAGCAGTGCCTTGCAATGAGTGTTCTAAGGAGCACCCTCCTTATTCTTATTGCCCTTACGCGCCTTGTCATATTTGTTATAAGGTTCACCACCATAGTTATTGCCCTTACTTAGACCATGTCCCACAGGGTGCAACTTTTCACCATGGCTATGAAATAATTTGTGGATGTGGCAATGAATTTAATGAGGATAAGTGGGTTTGTACCTCTTGTGGTGGGAGCAGAGCAGTGCTTAAGACCAAGTGTTGTAAAATTTGTAATAGCGTGAATCAGCATGGCGCATATGAATGCCCGAAGGACAAGGTTCTTGCTGCCAAGTATAAATTGGCCAGAGACAAGAGGCGTTCAGTTGTGCCGAATAGGATTCCCTATGAAACTGTTTGTATTCCAAAATCATCATCAGAAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACCGATGAAAGAAGGCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

29.75

Weight (kDa)

8.78

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccB1I GGYRCC 2 cut(s) 184, 275
AccB7I CCANNNNNTGG 1 cut(s) 329
AccI GTMKAC 2 cut(s) 287, 297
AccII CGCG 1 cut(s) 413
AciI CCGC 1 cut(s) 219
AclWI GGATC 2 cut(s) 219, 232
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 3 cut(s) 140, 530, 603
AcuI CTGAAG 1 cut(s) 286
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 3 cut(s) 104, 130, 556
AfiI CCNNNNNNNGG 4 cut(s) 181, 329, 346, 782
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 2 cut(s) 77, 99
AjnI CCWGG 2 cut(s) 174, 781
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 2 cut(s) 219, 232
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 3 cut(s) 178, 337, 678
ApaI GGGCCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 3 cut(s) 140, 530, 603
Asp700I GAANNNNTTC 1 cut(s) 165
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 2 cut(s) 415, 632
AspS9I GGNCC 6 cut(s) 8, 178, 179, 320, 338, 797
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 431, 485
AvaII GGWCC 3 cut(s) 8, 320, 797
AvrII CCTAGG 1 cut(s) 56
AxyI CCTNAGG 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 680
BamHI GGATCC 1 cut(s) 224
BanI GGYRCC 2 cut(s) 184, 275
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 649
BccI CCATC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 2 cut(s) 176, 783
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 2 cut(s) 57, 189
BfrI CTTAAG 1 cut(s) 584
BglII AGATCT 2 cut(s) 33, 759
BisI GCNGC 1 cut(s) 663
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 1 cut(s) 664
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 176, 182, 783
Bme18I GGWCC 3 cut(s) 8, 320, 797
BmgT120I GGNCC 6 cut(s) 8, 178, 179, 320, 338, 797
BmiI GGNNCC 5 cut(s) 10, 180, 186, 226, 277
BmrFI CCNGG 3 cut(s) 176, 182, 783
BpuMI CCSGG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 285
BsaJI CCNNGG 4 cut(s) 56, 175, 496, 782
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 763, 793
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 329, 346, 782
Bse1I ACTGG 2 cut(s) 235, 323
Bse21I CCTNAGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 373, 532
BseBI CCWGG 2 cut(s) 176, 783
BseDI CCNNGG 4 cut(s) 56, 175, 496, 782
BseGI GGATG 2 cut(s) 34, 524
BseLI CCNNNNNNNGG 4 cut(s) 181, 329, 346, 782
BseMI GCAATG 2 cut(s) 373, 532
BseNI ACTGG 2 cut(s) 235, 323
BseRI GAGGAG 2 cut(s) 765, 768
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 1 cut(s) 649
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 3 cut(s) 180, 339, 680
BshNI GGYRCC 2 cut(s) 184, 275
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 4 cut(s) 181, 329, 346, 782
BsmAI GTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 3 cut(s) 180, 339, 680
Bsp120I GGGCCC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 182, 387
Bsp143I GATC 3 cut(s) 33, 224, 759
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 1 cut(s) 219
BspANI GGCC 3 cut(s) 180, 339, 680
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 5 cut(s) 10, 180, 186, 226, 277
BspPI GGATC 2 cut(s) 219, 232
BspT107I GGYRCC 2 cut(s) 184, 275
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 373, 532
BsrI ACTGG 2 cut(s) 235, 323
BssECI CCNNGG 4 cut(s) 56, 175, 496, 782
BssMI GATC 3 cut(s) 33, 224, 759
BssNAI GTATAC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 56, 496
Bst1107I GTATAC 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 176, 783
Bst4CI ACNGT 4 cut(s) 72, 94, 166, 730
BstAFI CTTAAG 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 19, 274
BstDEI CTNAG 3 cut(s) 247, 378, 463
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 2 cut(s) 34, 524
BstFNI CGCG 1 cut(s) 413
BstHHI GCGC 2 cut(s) 415, 632
BstKTI GATC 3 cut(s) 36, 227, 762
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 3 cut(s) 33, 224, 759
BstNI CCWGG 2 cut(s) 176, 783
BstSCI CCNGG 3 cut(s) 174, 180, 781
BstSLI GKGCMC 1 cut(s) 182
BstSNI TACGTA 1 cut(s) 285
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 649
BstX2I RGATCY 3 cut(s) 33, 224, 759
BstYI RGATCY 3 cut(s) 33, 224, 759
BstZ17I GTATAC 1 cut(s) 288
Bsu36I CCTNAGG 1 cut(s) 247
BsuRI GGCC 3 cut(s) 180, 339, 680
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 2 cut(s) 34, 524
BtsI GCAGTG 2 cut(s) 363, 585
BtsIMutI CAGTG 4 cut(s) 228, 330, 363, 585
Cac8I GCNNGC 2 cut(s) 19, 274
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 415, 632
Cfr13I GGNCC 6 cut(s) 8, 178, 179, 320, 338, 797
CseI GACGC 1 cut(s) 23
Csp6I GTAC 3 cut(s) 103, 129, 555
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 3 cut(s) 470, 497, 626
CviJI RGCY 9 cut(s) 5, 21, 83, 180, 329, 339, 501, 680, 813
CviKI_1 RGCY 9 cut(s) 5, 21, 83, 180, 329, 339, 501, 680, 813
CviQI GTAC 3 cut(s) 103, 129, 555
DdeI CTNAG 3 cut(s) 247, 378, 463
DpnI GATC 3 cut(s) 35, 226, 761
DpnII GATC 3 cut(s) 33, 224, 759
DraIII CACNNNGTG 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 678
Eco105I TACGTA 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 56, 496
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 3 cut(s) 8, 320, 797
Eco57I CTGAAG 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 247
EcoO109I RGGNCCY 2 cut(s) 178, 338
EcoRII CCWGG 2 cut(s) 174, 781
EcoT14I CCWWGG 2 cut(s) 56, 496
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 56, 496
FaeI CATG 3 cut(s) 473, 500, 629
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 469, 496, 625
FauNDI CATATG 1 cut(s) 634
FblI GTMKAC 2 cut(s) 287, 297
Fnu4HI GCNGC 1 cut(s) 663
FokI GGATG 2 cut(s) 41, 531
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 663
FspBI CTAG 2 cut(s) 57, 189
GlaI GCGC 2 cut(s) 414, 631
GluI GCNGC 1 cut(s) 663
HaeIII GGCC 3 cut(s) 180, 339, 680
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 415, 632
Hin1II CATG 3 cut(s) 473, 500, 629
Hin6I GCGC 2 cut(s) 413, 630
HinP1I GCGC 2 cut(s) 413, 630
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 2 cut(s) 619, 715
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 431, 485
Hpy166II GTNNAC 4 cut(s) 288, 298, 439, 797
Hpy188I TCNGA 2 cut(s) 317, 754
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 4 cut(s) 288, 298, 439, 797
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 351, 640, 803
HpyCH4III ACNGT 4 cut(s) 72, 94, 166, 730
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 264, 366, 485
HpyF3I CTNAG 3 cut(s) 247, 378, 463
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 3 cut(s) 473, 500, 629
HspAI GCGC 2 cut(s) 413, 630
Kzo9I GATC 3 cut(s) 33, 224, 759
LmnI GCTCC 2 cut(s) 382, 570
Lsp1109I GCAGC 1 cut(s) 649
MaeI CTAG 2 cut(s) 57, 189
MaeII ACGT 1 cut(s) 284
MalI GATC 3 cut(s) 35, 226, 761
MboI GATC 3 cut(s) 33, 224, 759
MboII GAAGA 1 cut(s) 113
MflI RGATCY 3 cut(s) 33, 224, 759
MhlI GDGCHC 2 cut(s) 182, 387
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 5 cut(s) 140, 510, 530, 603, 674
MluNI TGGCCA 1 cut(s) 680
MmeI TCCRAC 1 cut(s) 794
MnlI CCTC 9 cut(s) 215, 311, 329, 399, 532, 568, 684, 786, 789
Mox20I TGGCCA 1 cut(s) 680
MroXI GAANNNNTTC 1 cut(s) 165
MscI TGGCCA 1 cut(s) 680
MseI TTAA 2 cut(s) 534, 585
MslI CAYNNNNRTG 2 cut(s) 501, 637
Msp20I TGGCCA 1 cut(s) 680
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 3 cut(s) 176, 182, 783
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 2 cut(s) 176, 783
MvnI CGCG 1 cut(s) 413
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 496
NdeI CATATG 1 cut(s) 634
NdeII GATC 3 cut(s) 33, 224, 759
NlaIII CATG 3 cut(s) 473, 500, 629
NlaIV GGNNCC 5 cut(s) 10, 180, 186, 226, 277
PctI GAATGC 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 619, 715
PflFI GACNNNGTC 1 cut(s) 470
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 664
Ppu21I YACGTR 1 cut(s) 285
PsiI TTATAA 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 174, 781
PspGI CCWGG 2 cut(s) 174, 781
PspN4I GGNNCC 5 cut(s) 10, 180, 186, 226, 277
PspOMI GGGCCC 1 cut(s) 178
PspPI GGNCC 6 cut(s) 8, 178, 179, 320, 338, 797
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 3 cut(s) 33, 224, 759
PsyI GACNNNGTC 1 cut(s) 470
RsaI GTAC 3 cut(s) 104, 130, 556
RsaNI GTAC 3 cut(s) 103, 129, 555
RseI CAYNNNNRTG 2 cut(s) 501, 637
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 534, 585
SatI GCNGC 1 cut(s) 663
Sau3AI GATC 3 cut(s) 33, 224, 759
Sau96I GGNCC 6 cut(s) 8, 178, 179, 320, 338, 797
ScaI AGTACT 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 176, 182, 783
SduI GDGCHC 2 cut(s) 182, 387
SinI GGWCC 3 cut(s) 8, 320, 797
SmiMI CAYNNNNRTG 2 cut(s) 501, 637
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SnaBI TACGTA 1 cut(s) 285
Sse9I AATT 5 cut(s) 140, 510, 530, 603, 674
SsiI CCGC 1 cut(s) 219
SspMI CTAG 2 cut(s) 57, 189
StyD4I CCNGG 3 cut(s) 174, 180, 781
StyI CCWWGG 2 cut(s) 56, 496
TaaI ACNGT 4 cut(s) 72, 94, 166, 730
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 208, 297
TaqII GACCGA 1 cut(s) 814
TasI AATT 5 cut(s) 140, 510, 530, 603, 674
TatI WGTACW 2 cut(s) 102, 128
TfiI GAWTC 2 cut(s) 619, 715
Tru1I TTAA 2 cut(s) 534, 585
Tru9I TTAA 2 cut(s) 534, 585
TscAI CASTG 4 cut(s) 235, 330, 363, 585
TseI GCWGC 1 cut(s) 662
TspDTI ATGAA 7 cut(s) 65, 80, 519, 543, 651, 738, 818
TspRI CASTG 4 cut(s) 235, 330, 363, 585
Tth111I GACNNNGTC 1 cut(s) 470
Van91I CCANNNNNTGG 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 3 cut(s) 8, 320, 797
XapI RAATTY 3 cut(s) 140, 530, 603
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XmaJI CCTAGG 1 cut(s) 56
XmiI GTMKAC 2 cut(s) 287, 297
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 2 cut(s) 57, 189
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.