Rh6DG312200

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001195
Physical Location & Seq
Forward (+)
51342881 .. 51343330
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG312200.1

Sequence Viewer

Length: 450 bp
ATGGCCATGTATATCGGGTTTGATGATTTTAGACCAGTGAGACCAGAAGAAGAAGAAGCAAAGGTCGATACTCATGATCCAAAAAAAGAAGCGAAGCGTTCTCGAATCTGTAAAGCGGATGTGTTCTGGAAGGGCGACGAGTACAAGACTTGTAATATTTGTTCTGAGGAGCACTTAATGGGTTCTGTCTGCCCTTACCGGGACTGTGTCCCGCCGGGCGCAACTGTCGGCCCTCAATATCATGTAATTTGTCGGGGATGTGGTCGTATGATTCTCGATTGGTCTGAGACTTGGGTTTGCAATTACTGTTTTTCGGAACAAGCAAGGGTTTCTGAAAAGTCATGTAACATTTGCGACACCTTTTATATGCACAATAGCACAGATTGCCCAGTCGACAAGGATAGAGCTGCCAGGTTCAAAAAGCTTCTCATAGCTTGTCGAGCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.18

Weight (kDa)

6.42

Isoelectric Point (pI)

58.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AciI CCGC 2 cut(s) 116, 212
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 4 cut(s) 407, 424, 434, 443
AluI AGCT 4 cut(s) 407, 424, 434, 443
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 34, 281
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 3, 229
ApeKI GCWGC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 200, 216
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 412
BcnI CCSGG 2 cut(s) 200, 216
BcoDI GTCTC 2 cut(s) 34, 281
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 200, 216, 412
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 3 cut(s) 200, 216, 412
BmrI ACTGGG 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 200, 216
BsaI GGTCTC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 35, 389
BseBI CCWGG 1 cut(s) 412
BseGI GGATG 2 cut(s) 124, 263
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 156, 276
BseNI ACTGG 2 cut(s) 35, 389
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 2 cut(s) 5, 231
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 199, 215
BslFI GGGAC 2 cut(s) 194, 215
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 34, 281
BsmFI GGGAC 2 cut(s) 194, 215
BsnI GGCC 2 cut(s) 5, 231
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 2 cut(s) 116, 212
BspANI GGCC 2 cut(s) 5, 231
BspCNI CTCAG 2 cut(s) 157, 277
BspHI TCATGA 1 cut(s) 73
BspPI GGATC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 2 cut(s) 35, 389
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 3 cut(s) 206, 226, 308
BstAPI GCANNNNNTGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 165, 285
BstF5I GGATG 2 cut(s) 124, 263
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 34, 281
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 384, 440
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 3 cut(s) 198, 214, 410
BstV1I GCAGC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 5, 231
BtsCI GGATG 2 cut(s) 124, 263
BtsIMutI CAGTG 1 cut(s) 42
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 142
CviAII CATG 4 cut(s) 7, 74, 242, 342
CviJI RGCY 6 cut(s) 5, 231, 407, 424, 434, 443
CviKI_1 RGCY 6 cut(s) 5, 231, 407, 424, 434, 443
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 165, 285
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 410
FaeI CATG 4 cut(s) 10, 77, 245, 345
FaqI GGGAC 2 cut(s) 194, 215
FatI CATG 4 cut(s) 6, 73, 241, 341
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 131, 270
Fsp4HI GCNGC 1 cut(s) 408
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 5, 231
HapII CCGG 2 cut(s) 199, 215
HhaI GCGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 10, 77, 245, 345
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 105, 271
HpaII CCGG 2 cut(s) 199, 215
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 4 cut(s) 166, 286, 316, 334
Hpy188III TCNNGA 4 cut(s) 74, 102, 127, 275
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 206, 226, 308
HpyCH4V TGCA 2 cut(s) 300, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 440
HpyF3I CTNAG 2 cut(s) 165, 285
Hsp92II CATG 4 cut(s) 10, 77, 245, 345
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 8 cut(s) 48, 57, 112, 212, 228, 397, 402, 424
Lsp1109I GCAGC 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 59, 62, 65
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 246, 301
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 160, 243
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 199, 215
MspR9I CCNGG 3 cut(s) 200, 216, 412
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 2 cut(s) 384, 440
NciI CCSGG 2 cut(s) 200, 216
NdeII GATC 1 cut(s) 76
NlaIII CATG 4 cut(s) 10, 77, 245, 345
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 2 cut(s) 105, 271
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspPI GGNCC 1 cut(s) 230
PsrI GAACNNNNNNTAC 2 cut(s) 145, 177
PsyI GACNNNGTC 1 cut(s) 206
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 200, 216, 412
SduI GDGCHC 1 cut(s) 174
SetI ASST 7 cut(s) 66, 362, 409, 416, 426, 436, 445
Sse9I AATT 2 cut(s) 246, 301
SsiI CCGC 2 cut(s) 116, 212
SspI AATATT 1 cut(s) 157
StyD4I CCNGG 3 cut(s) 198, 214, 410
TaaI ACNGT 3 cut(s) 206, 226, 308
TaqI TCGA 5 cut(s) 66, 103, 276, 393, 439
TasI AATT 2 cut(s) 246, 301
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 105, 271
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 407
TspRI CASTG 1 cut(s) 42
Tth111I GACNNNGTC 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.