Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

33221914 .. 33222986

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGTGTCTGCTTGAGATCGAGGTTGGCTTCGAAGGAGGAGAAGTTCTCATACAGCGGCGAGGTCGGCTTCAAGGGAGGCATGACATATCTTGCAGAGGAGATCGCCGATGAACTACCGCAACCAAAACGAGCTCCCAGCAAGATGAGAAAAAACTTACCTTCTCCTTTGAGAATCTCGCTGCCTCTTCTCCCGAAACTGTTGGGTTCCAGATCTGGAAGAAGCGATGGAAAAGGCTACACGGCATCCGATGGTTCAGGCTCCTATCCTCCCACCCCGTTCAGATCGGGGTTCATAGTGCCGAATCCTGAGGTGCACTATAAACAAACAGCTGCCTATATTCGAGTGGGGGATGAAAGTTCCAAAGAGCTAGCCAAGTTTGAAGGACCCGGAGTACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.41

Weight (kDa)

9.52

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 119
AfaI	GTAC	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	73, 383
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	3 cut(s)	134, 332, 370
AluI	AGCT	3 cut(s)	134, 332, 370
Alw21I	GWGCWC	2 cut(s)	136, 318
Alw44I	GTGCAC	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	181, 332
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	390
AsuII	TTCGAA	1 cut(s)	32
AsuNHI	GCTAGC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
Bbv12I	GWGCWC	2 cut(s)	136, 318
BbvI	GCAGC	2 cut(s)	168, 319
BccI	CCATC	2 cut(s)	221, 245
BceAI	ACGGC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	390
BfaI	CTAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	3 cut(s)	58, 182, 333
BlsI	GCNGC	3 cut(s)	59, 183, 334
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	208, 262, 388
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	254
BmtI	GCTAGC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse21I	CCTNAGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	245, 358
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	53, 113
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	168, 319
BseYI	CCCAGC	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	136, 318
BsiSI	CCGG	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	136, 318
Bsp143I	GATC	4 cut(s)	17, 102, 212, 284
BspACI	CCGC	2 cut(s)	57, 119
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	208, 262, 388
BspOI	GCTAGC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	32
BssMI	GATC	4 cut(s)	17, 102, 212, 284
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	309, 399
BstF5I	GGATG	2 cut(s)	245, 358
BstKTI	GATC	4 cut(s)	20, 105, 215, 287
BstMBI	GATC	4 cut(s)	17, 102, 212, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	168, 319
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	245, 358
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	8 cut(s)	29, 69, 134, 237, 261, 332, 370, 374
CviKI_1	RGCY	8 cut(s)	29, 69, 134, 237, 261, 332, 370, 374
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	309, 399
DpnI	GATC	4 cut(s)	19, 104, 214, 286
DpnII	GATC	4 cut(s)	17, 102, 212, 284
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	134
Eco81I	CCTNAGG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	1 cut(s)	85
FaiI	YATR	6 cut(s)	52, 83, 88, 296, 321, 339
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	58, 182, 333
FokI	GGATG	2 cut(s)	232, 365
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	58, 182, 333
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	3 cut(s)	58, 182, 333
GsaI	CCCAGC	1 cut(s)	141
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	2 cut(s)	174, 304
HpaII	CCGG	1 cut(s)	390
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	250, 284
Hpy188III	TCNNGA	4 cut(s)	193, 210, 216, 308
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	28, 171, 377
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	95, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	2 cut(s)	309, 399
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	17, 102, 212, 284
LmnI	GCTCC	2 cut(s)	139, 266
LpnPI	CCDG	5 cut(s)	151, 201, 223, 243, 321
Lsp1109I	GCAGC	2 cut(s)	168, 319
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	371
MalI	GATC	4 cut(s)	19, 104, 214, 286
MboI	GATC	4 cut(s)	17, 102, 212, 284
MboII	GAAGA	2 cut(s)	179, 231
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	136, 318
MnlI	CCTC	8 cut(s)	15, 31, 55, 71, 91, 195, 279, 304
MspA1I	CMGCKG	2 cut(s)	57, 332
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	4 cut(s)	17, 102, 212, 284
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	208, 262, 388
NspV	TTCGAA	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	174, 304
PkrI	GCNGC	3 cut(s)	59, 183, 334
PpuMI	RGGWCCY	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	208, 262, 388
PspPI	GGNCC	1 cut(s)	386
PspPPI	RGGWCCY	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	136
SatI	GCNGC	3 cut(s)	58, 182, 333
Sau3AI	GATC	4 cut(s)	17, 102, 212, 284
Sau96I	GGNCC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	136, 318
SetI	ASST	8 cut(s)	26, 66, 136, 163, 315, 334, 372, 400
SfaNI	GCATC	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SsiI	CCGC	2 cut(s)	57, 119
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	20, 32, 343
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	174, 304
TseI	GCWGC	2 cut(s)	181, 332
TspDTI	ATGAA	3 cut(s)	126, 283, 369
VneI	GTGCAC	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	386
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.