Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

55128987 .. 55129937

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG320200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCATGTACATCGGGCTTGATGATTTTAGAGCAGTGAGACCAGAAGAAGAAGCCAAACAAGAAGCGAAGCGTGCTCGAATCTGTAAAGCGGATGTGTTCTGGAACGGCGACGAGTACAAGACTTGTAATGTTTGTTCTGAGGAGCACTTGATGGGTTCTCTCTGCCCTTACTGGGAATGTGTCCCGCCGGGCGCAACTGTCGGCCCTCAATATCATGTAATTTGTCGGGAATGTGGTCGTATGATTCTCGATTGGTCTGAGACTTGGGTTTGCAATTATTGTTTTTCGGAACAAGCAAGGGTTTCTGAAAAGTCATGTACCATTTGCGACACCTTTTATATGCACAATAGCACAGATTGCCCGGTCGACAAGGATAGAGCTGCTAGGTTGAAAAACCTTCTCATAGCTTGTCGAGCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.23

Weight (kDa)

5.39

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	2 cut(s)	92, 188
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	11, 119, 322
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	3 cut(s)	383, 410, 419
AluI	AGCT	3 cut(s)	383, 410, 419
Alw21I	GWGCWC	2 cut(s)	79, 150
Alw26I	GTCTC	2 cut(s)	34, 257
AoxI	GGCC	2 cut(s)	3, 205
ApeKI	GCWGC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	192, 365
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	79, 150
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	124
BcnI	CCSGG	2 cut(s)	192, 365
BcoDI	GTCTC	2 cut(s)	34, 257
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	192, 365
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	192, 365
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpuMI	CCSGG	2 cut(s)	192, 365
BsaI	GGTCTC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	132, 252
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	370
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	5, 207
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	2 cut(s)	79, 150
BsiSI	CCGG	2 cut(s)	191, 365
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	34, 257
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	5, 207
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	79, 150
Bsp1407I	TGTACA	1 cut(s)	9
BspACI	CCGC	2 cut(s)	92, 188
BspANI	GGCC	2 cut(s)	5, 207
BspCNI	CTCAG	2 cut(s)	133, 253
BspTNI	GGTCTC	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	141, 261
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	197
BstMAI	GTCTC	2 cut(s)	34, 257
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 360, 416
BstSCI	CCNGG	2 cut(s)	190, 363
BstV1I	GCAGC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	5, 207
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	10, 118, 321
CviAII	CATG	3 cut(s)	7, 218, 318
CviJI	RGCY	7 cut(s)	5, 19, 56, 207, 383, 410, 419
CviKI_1	RGCY	7 cut(s)	5, 19, 56, 207, 383, 410, 419
CviQI	GTAC	3 cut(s)	10, 118, 321
DdeI	CTNAG	2 cut(s)	141, 261
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	10, 221, 321
FaiI	YATR	8 cut(s)	8, 219, 245, 319, 342, 344, 407, 422
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	6, 217, 317
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	5, 207
HapII	CCGG	2 cut(s)	191, 365
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	10, 221, 321
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	81, 247
HpaII	CCGG	2 cut(s)	191, 365
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	142, 262, 292, 310
Hpy188III	TCNNGA	3 cut(s)	103, 230, 251
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	276, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 360, 416
HpyF3I	CTNAG	2 cut(s)	141, 261
Hsp92II	CATG	3 cut(s)	10, 221, 321
HspAI	GCGC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	57, 88, 160, 204, 378
Lsp1109I	GCAGC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	387
MboII	GAAGA	2 cut(s)	59, 62
MhlI	GDGCHC	2 cut(s)	79, 150
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	222, 277
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	136, 219
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	191, 365
MspR9I	CCNGG	2 cut(s)	192, 365
MwoI	GCNNNNNNNGC	3 cut(s)	74, 360, 416
NciI	CCSGG	2 cut(s)	192, 365
NlaIII	CATG	3 cut(s)	10, 221, 321
PfeI	GAWTC	2 cut(s)	81, 247
PkrI	GCNGC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	206
PsrI	GAACNNNNNNTAC	2 cut(s)	121, 153
RsaI	GTAC	3 cut(s)	11, 119, 322
RsaNI	GTAC	3 cut(s)	10, 118, 321
SalI	GTCGAC	1 cut(s)	368
SatI	GCNGC	1 cut(s)	384
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	192, 365
SduI	GDGCHC	2 cut(s)	79, 150
SetI	ASST	6 cut(s)	338, 385, 392, 402, 412, 421
Sse9I	AATT	2 cut(s)	222, 277
SsiI	CCGC	2 cut(s)	92, 188
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	190, 363
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	4 cut(s)	79, 252, 369, 415
TasI	AATT	2 cut(s)	222, 277
TatI	WGTACW	2 cut(s)	9, 117
TfiI	GAWTC	2 cut(s)	81, 247
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	383
TspRI	CASTG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.