Rh5AG382200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001195
Physical Location & Seq
Reverse (-)
65686229 .. 65732884
46656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG382200.1

Sequence Viewer

Length: 843 bp
ATGGTGGTGGTAGCGTTGAGGATGCTGCACAGGGTTGGTGCAAGTGAGTTTATTGGTTTACTTTGTGAAGCAGAGAGCCTAAGTATGGCTGGACCCAACGCAAGCTGTGTAGATGAGATCTGCCAGGGAGATGAAACTATTTCAAAAGGCGTAAGAAACCTAGCCATCTTCTTTGAGACTCTCGGCGCCTCTTCTCCGGGAAACAGTTCAGTTCCAAGGCTCGGGCACCTAGTTCTAAAACCAGCAATCGAAAAGGTTGCGGAGGATCCCCTGGTTCAGGCACCTATACCTATACTCTTGTCGACTTCAGTTCCAAGTTCAGAGGACCAGTGGCTGGTGGAGGCCCTTCTATGGACAAGGGAGTGCCTTGCAATGAGTGTTCTAAGGAGCACCCTCCTTATTCTTATTGCCCTTACGCGCCTTGTCATATTTGTTATAAGGTTCACCACCCTAGTTATTGCCCTTACTTCGACCATATCCCACAGGGTGCCAACTTTTCACCATGGCTATGAAATAATTTGTGGATGTGGTAATGAATTTAATGAGGATAAGTGGGTTTGTACCTCTTGTGGTGGGAGCAGAGCAGTGCTTAAGGCCAAGCATTGTTCCATTTGTAATAGCGTGAAACAGCACGGCACATATGAATGCCCGAAGGACAAGGTTCTTGCTGCTAAGTATAAATTGGCCAGAGACCAGATACGTTCAGTTGTACCGAATTTGATTCCTTATGACACTGTCTATATTCCAAAATCATCATCAGGAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACATGAAAGAAGGCATGCTTACTGGGTCTACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

30.42

Weight (kDa)

8.23

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 437
AccB1I GGYRCC 4 cut(s) 185, 225, 280, 487
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 2 cut(s) 302, 833
AccII CGCG 1 cut(s) 418
AciI CCGC 1 cut(s) 260
AclWI GGATC 2 cut(s) 260, 273
AcoI YGGCCR 1 cut(s) 684
AcsI RAATTY 2 cut(s) 536, 715
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 487
AfaI GTAC 2 cut(s) 562, 711
AfiI CCNNNNNNNGG 6 cut(s) 85, 221, 277, 334, 351, 788
AflII CTTAAG 1 cut(s) 590
AgsI TTSAA 1 cut(s) 144
AjnI CCWGG 3 cut(s) 123, 270, 787
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 2 cut(s) 170, 684
AlwI GGATC 2 cut(s) 260, 273
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 3 cut(s) 342, 594, 684
ApeKI GCWGC 2 cut(s) 25, 668
ApoI RAATTY 2 cut(s) 536, 715
Asp700I GAANNNNTTC 1 cut(s) 205
AspLEI GCGC 2 cut(s) 188, 420
AspS9I GGNCC 3 cut(s) 92, 325, 343
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 436, 491
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 92, 325
BaeGI GKGCMC 1 cut(s) 228
BalI TGGCCA 1 cut(s) 686
BamHI GGATCC 1 cut(s) 265
BanI GGYRCC 4 cut(s) 185, 225, 280, 487
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 2 cut(s) 12, 655
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 649
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 3 cut(s) 125, 272, 789
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 170, 684
BfaI CTAG 3 cut(s) 161, 230, 452
BfoI RGCGCY 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 590
BglII AGATCT 2 cut(s) 117, 765
BisI GCNGC 2 cut(s) 26, 669
BlsI GCNGC 2 cut(s) 27, 670
Bme1390I CCNGG 4 cut(s) 125, 198, 272, 789
Bme18I GGWCC 2 cut(s) 92, 325
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 92, 325, 343
BmiI GGNNCC 6 cut(s) 94, 187, 227, 267, 282, 489
BmrFI CCNGG 4 cut(s) 125, 198, 272, 789
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 1 cut(s) 12
BmuI ACTGGG 1 cut(s) 837
BpuMI CCSGG 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 684
BsaJI CCNNGG 5 cut(s) 124, 215, 270, 502, 788
BsaXI ACNNNNNCTCC 2 cut(s) 769, 799
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 221, 277, 334, 351, 788
Bse1I ACTGG 2 cut(s) 328, 832
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 3 cut(s) 125, 272, 789
BseDI CCNNGG 5 cut(s) 124, 215, 270, 502, 788
BseGI GGATG 2 cut(s) 27, 530
BseLI CCNNNNNNNGG 6 cut(s) 85, 221, 277, 334, 351, 788
BseMI GCAATG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 328, 832
BseRI GAGGAG 2 cut(s) 771, 774
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 12, 655
BsgI GTGCAG 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 418
BshFI GGCC 3 cut(s) 344, 596, 686
BshNI GGYRCC 4 cut(s) 185, 225, 280, 487
BsiHKAI GWGCWC 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 6 cut(s) 85, 221, 277, 334, 351, 788
BsmAI GTCTC 2 cut(s) 170, 684
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 3 cut(s) 344, 596, 686
Bso31I GGTCTC 1 cut(s) 684
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 228, 392
Bsp143I GATC 3 cut(s) 117, 265, 765
Bsp19I CCATGG 1 cut(s) 502
BspACI CCGC 1 cut(s) 260
BspANI GGCC 3 cut(s) 344, 596, 686
BspFNI CGCG 1 cut(s) 418
BspLI GGNNCC 6 cut(s) 94, 187, 227, 267, 282, 489
BspPI GGATC 2 cut(s) 260, 273
BspT107I GGYRCC 4 cut(s) 185, 225, 280, 487
BspTI CTTAAG 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 2 cut(s) 328, 832
BssECI CCNNGG 5 cut(s) 124, 215, 270, 502, 788
BssMI GATC 3 cut(s) 117, 265, 765
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 215, 502
Bst2UI CCWGG 3 cut(s) 125, 272, 789
Bst4CI ACNGT 2 cut(s) 206, 736
Bst6I CTCTTC 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 186
BstAFI CTTAAG 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 103, 821
BstDEI CTNAG 3 cut(s) 80, 383, 672
BstDSI CCRYGG 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 27, 530
BstFNI CGCG 1 cut(s) 418
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 188, 420
BstKTI GATC 3 cut(s) 120, 268, 768
BstMAI GTCTC 2 cut(s) 170, 684
BstMBI GATC 3 cut(s) 117, 265, 765
BstNI CCWGG 3 cut(s) 125, 272, 789
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 4 cut(s) 123, 196, 270, 787
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 12, 655
BstX2I RGATCY 3 cut(s) 117, 265, 765
BstYI RGATCY 3 cut(s) 117, 265, 765
BsuRI GGCC 3 cut(s) 344, 596, 686
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 2 cut(s) 27, 530
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 3 cut(s) 335, 591, 732
Cac8I GCNNGC 2 cut(s) 103, 821
CaiI CAGNNNCTG 1 cut(s) 334
CfoI GCGC 2 cut(s) 188, 420
Cfr13I GGNCC 3 cut(s) 92, 325, 343
Csp6I GTAC 2 cut(s) 561, 710
CviAII CATG 3 cut(s) 503, 808, 820
CviQI GTAC 2 cut(s) 561, 710
DdeI CTNAG 3 cut(s) 80, 383, 672
DinI GGCGCC 1 cut(s) 187
DpnI GATC 3 cut(s) 119, 267, 767
DpnII GATC 3 cut(s) 117, 265, 765
DraIII CACNNNGTG 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 215, 502
Eco31I GGTCTC 1 cut(s) 684
Eco47I GGWCC 2 cut(s) 92, 325
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 3 cut(s) 123, 270, 787
EcoT14I CCWWGG 2 cut(s) 215, 502
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 2 cut(s) 215, 502
FaeI CATG 3 cut(s) 506, 811, 823
FalI AAGNNNNNCTT 2 cut(s) 807, 839
FatI CATG 3 cut(s) 502, 807, 819
FauNDI CATATG 1 cut(s) 640
FblI GTMKAC 2 cut(s) 302, 833
Fnu4HI GCNGC 2 cut(s) 26, 669
FokI GGATG 2 cut(s) 34, 537
Fsp4HI GCNGC 2 cut(s) 26, 669
FspBI CTAG 3 cut(s) 161, 230, 452
GlaI GCGC 2 cut(s) 187, 419
GluI GCNGC 2 cut(s) 26, 669
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 344, 596, 686
HapII CCGG 1 cut(s) 197
HhaI GCGC 2 cut(s) 188, 420
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 506, 811, 823
Hin6I GCGC 2 cut(s) 186, 418
HinP1I GCGC 2 cut(s) 186, 418
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 2 cut(s) 178, 721
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 436, 491
Hpy166II GTNNAC 5 cut(s) 59, 303, 444, 803, 834
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 759
Hpy8I GTNNAC 5 cut(s) 59, 303, 444, 803, 834
HpyAV CCTTC 3 cut(s) 356, 646, 809
HpyCH4III ACNGT 2 cut(s) 206, 736
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 3 cut(s) 28, 41, 371
HpyF3I CTNAG 3 cut(s) 80, 383, 672
HpySE526I ACGT 1 cut(s) 700
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 506, 811, 823
HspAI GCGC 2 cut(s) 186, 418
KasI GGCGCC 1 cut(s) 185
Kzo9I GATC 3 cut(s) 117, 265, 765
LmnI GCTCC 2 cut(s) 387, 576
Lsp1109I GCAGC 2 cut(s) 12, 655
LweI GCATC 1 cut(s) 12
MaeI CTAG 3 cut(s) 161, 230, 452
MaeII ACGT 1 cut(s) 700
MalI GATC 3 cut(s) 119, 267, 767
MboI GATC 3 cut(s) 117, 265, 765
MboII GAAGA 2 cut(s) 160, 183
MflI RGATCY 3 cut(s) 117, 265, 765
MhlI GDGCHC 2 cut(s) 228, 392
MlsI TGGCCA 1 cut(s) 686
MluCI AATT 4 cut(s) 516, 536, 680, 715
MluNI TGGCCA 1 cut(s) 686
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 800
Mox20I TGGCCA 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 205
MscI TGGCCA 1 cut(s) 686
MseI TTAA 2 cut(s) 540, 591
MslI CAYNNNNRTG 2 cut(s) 507, 643
Msp20I TGGCCA 1 cut(s) 686
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 4 cut(s) 125, 198, 272, 789
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 3 cut(s) 125, 272, 789
MvnI CGCG 1 cut(s) 418
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 198
NcoI CCATGG 1 cut(s) 502
NdeI CATATG 1 cut(s) 640
NdeII GATC 3 cut(s) 117, 265, 765
NlaIII CATG 3 cut(s) 506, 811, 823
NlaIV GGNNCC 6 cut(s) 94, 187, 227, 267, 282, 489
NmeAIII GCCGAG 1 cut(s) 162
NspI RCATGY 1 cut(s) 823
PaeI GCATGC 1 cut(s) 823
PctI GAATGC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 721
PflFI GACNNNGTC 1 cut(s) 734
PflMI CCANNNNNTGG 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 2 cut(s) 27, 670
PleI GAGTC 1 cut(s) 172
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 172
PsiI TTATAA 1 cut(s) 437
Psp6I CCWGG 3 cut(s) 123, 270, 787
PspGI CCWGG 3 cut(s) 123, 270, 787
PspN4I GGNNCC 6 cut(s) 94, 187, 227, 267, 282, 489
PspPI GGNCC 3 cut(s) 92, 325, 343
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 3 cut(s) 117, 265, 765
PsyI GACNNNGTC 1 cut(s) 734
RsaI GTAC 2 cut(s) 562, 711
RsaNI GTAC 2 cut(s) 561, 710
RseI CAYNNNNRTG 2 cut(s) 507, 643
SalI GTCGAC 1 cut(s) 301
SaqAI TTAA 2 cut(s) 540, 591
SatI GCNGC 2 cut(s) 26, 669
Sau3AI GATC 3 cut(s) 117, 265, 765
Sau96I GGNCC 3 cut(s) 92, 325, 343
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 4 cut(s) 125, 198, 272, 789
SduI GDGCHC 2 cut(s) 228, 392
SfaNI GCATC 1 cut(s) 12
SfoI GGCGCC 1 cut(s) 187
SinI GGWCC 2 cut(s) 92, 325
SmiMI CAYNNNNRTG 2 cut(s) 507, 643
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
SphI GCATGC 1 cut(s) 823
Sse9I AATT 4 cut(s) 516, 536, 680, 715
SsiI CCGC 1 cut(s) 260
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 3 cut(s) 161, 230, 452
StyD4I CCNGG 4 cut(s) 123, 196, 270, 787
StyI CCWWGG 2 cut(s) 215, 502
TaaI ACNGT 2 cut(s) 206, 736
TaiI ACGT 1 cut(s) 703
TaqI TCGA 3 cut(s) 249, 302, 470
TasI AATT 4 cut(s) 516, 536, 680, 715
TfiI GAWTC 1 cut(s) 721
Tru1I TTAA 2 cut(s) 540, 591
Tru9I TTAA 2 cut(s) 540, 591
TscAI CASTG 3 cut(s) 335, 591, 739
TseI GCWGC 2 cut(s) 25, 668
TspDTI ATGAA 5 cut(s) 147, 525, 549, 657, 824
TspRI CASTG 3 cut(s) 335, 591, 739
Tth111I GACNNNGTC 1 cut(s) 734
Van91I CCANNNNNTGG 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 92, 325
XagI CCTNNNNNAGG 1 cut(s) 275
XapI RAATTY 2 cut(s) 536, 715
XceI RCATGY 1 cut(s) 823
XmiI GTMKAC 2 cut(s) 302, 833
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 3 cut(s) 161, 230, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.