Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003525.1

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

93063 .. 94524

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003525.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggctggacccgacgcaagctgtgtggatgagatctgccatctccctatgaaccctagggagatgaaactgtttcaaaaggcatacaaggaaacagttcagttccagggcccggcacctagttctaaaaccagcaatcgaaaaggttgcggaggatccactggttcaggttttgccttaggtattgggaactgcaaacaagcaggcacctatacgtatactcctgtcgacttcagttccaagttcagaggaccagtggctggtggaggcccttctatggacaaagcagtgccttgcaatgagtgttctaaggagcaccctccttattcttattgcccttacgcgccttgtcatatttgttataaggttcaccaccatagttattgcccttacttagaccatgtcccacagggtgcaacttttcaccatggctatgaaataatttgtggatgtggcaatgaatttaatgaggataagtgggtttgtacctcttgtggtgggagcagagcagtgcttaagaccaagtgttgtaaaatttgtaatagcgtgaatcagcatggcgcatatgaatgcccgaaggacaaggttcttgctgccaagtataaattggccagagacaagaggcgttcagttgtgccgaataggattccctatgaaactgtttgtattccaaaatcatcatcagaaaagatctatgttccaactcctcctcctgggtgggtttgtggaccgatgaaagaaggctcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.15

Weight (kDa)

8.74

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccB1I	GGYRCC	2 cut(s)	115, 206
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccI	GTMKAC	2 cut(s)	218, 228
AccII	CGCG	1 cut(s)	344
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	2 cut(s)	150, 163
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	2 cut(s)	461, 534
AcuI	CTGAAG	1 cut(s)	217
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	4 cut(s)	112, 260, 277, 713
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	2 cut(s)	105, 712
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	609
AlwI	GGATC	2 cut(s)	150, 163
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	109, 268, 609
ApaI	GGGCCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	461, 534
Asp700I	GAANNNNTTC	1 cut(s)	96
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	346, 563
AspS9I	GGNCC	6 cut(s)	8, 109, 110, 251, 269, 728
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	362, 416
AvaII	GGWCC	3 cut(s)	8, 251, 728
AvrII	CCTAGG	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	155
BanI	GGYRCC	2 cut(s)	115, 206
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	2 cut(s)	107, 714
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	2 cut(s)	57, 120
BfrI	CTTAAG	1 cut(s)	515
BglII	AGATCT	2 cut(s)	33, 690
BisI	GCNGC	1 cut(s)	594
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	3 cut(s)	107, 113, 714
Bme18I	GGWCC	3 cut(s)	8, 251, 728
BmgT120I	GGNCC	6 cut(s)	8, 109, 110, 251, 269, 728
BmiI	GGNNCC	5 cut(s)	10, 111, 117, 157, 208
BmrFI	CCNGG	3 cut(s)	107, 113, 714
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	56, 106, 427, 713
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 694, 724
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 260, 277, 713
Bse1I	ACTGG	2 cut(s)	166, 254
Bse21I	CCTNAGG	1 cut(s)	178
Bse3DI	GCAATG	2 cut(s)	304, 463
BseBI	CCWGG	2 cut(s)	107, 714
BseDI	CCNNGG	4 cut(s)	56, 106, 427, 713
BseGI	GGATG	2 cut(s)	34, 455
BseLI	CCNNNNNNNGG	4 cut(s)	112, 260, 277, 713
BseMI	GCAATG	2 cut(s)	304, 463
BseNI	ACTGG	2 cut(s)	166, 254
BseRI	GAGGAG	2 cut(s)	696, 699
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	111, 270, 611
BshNI	GGYRCC	2 cut(s)	115, 206
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	4 cut(s)	112, 260, 277, 713
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	3 cut(s)	111, 270, 611
Bsp120I	GGGCCC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	113, 318
Bsp143I	GATC	3 cut(s)	33, 155, 690
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	3 cut(s)	111, 270, 611
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	5 cut(s)	10, 111, 117, 157, 208
BspPI	GGATC	2 cut(s)	150, 163
BspT107I	GGYRCC	2 cut(s)	115, 206
BspTI	CTTAAG	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	304, 463
BsrI	ACTGG	2 cut(s)	166, 254
BssECI	CCNNGG	4 cut(s)	56, 106, 427, 713
BssMI	GATC	3 cut(s)	33, 155, 690
BssNAI	GTATAC	1 cut(s)	219
BssT1I	CCWWGG	2 cut(s)	56, 427
Bst1107I	GTATAC	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	107, 714
Bst4CI	ACNGT	3 cut(s)	72, 97, 661
BstAFI	CTTAAG	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	19, 205
BstDEI	CTNAG	3 cut(s)	178, 309, 394
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	34, 455
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	2 cut(s)	346, 563
BstKTI	GATC	3 cut(s)	36, 158, 693
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	3 cut(s)	33, 155, 690
BstNI	CCWGG	2 cut(s)	107, 714
BstSCI	CCNGG	3 cut(s)	105, 111, 712
BstSLI	GKGCMC	1 cut(s)	113
BstSNI	TACGTA	1 cut(s)	216
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	580
BstX2I	RGATCY	3 cut(s)	33, 155, 690
BstYI	RGATCY	3 cut(s)	33, 155, 690
BstZ17I	GTATAC	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	111, 270, 611
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	34, 455
BtsI	GCAGTG	2 cut(s)	294, 516
BtsIMutI	CAGTG	4 cut(s)	159, 261, 294, 516
Cac8I	GCNNGC	2 cut(s)	19, 205
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	2 cut(s)	346, 563
Cfr13I	GGNCC	6 cut(s)	8, 109, 110, 251, 269, 728
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	486
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	3 cut(s)	401, 428, 557
CviJI	RGCY	8 cut(s)	5, 21, 111, 260, 270, 432, 611, 744
CviKI_1	RGCY	8 cut(s)	5, 21, 111, 260, 270, 432, 611, 744
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	3 cut(s)	178, 309, 394
DpnI	GATC	3 cut(s)	35, 157, 692
DpnII	GATC	3 cut(s)	33, 155, 690
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	609
Eco105I	TACGTA	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	56, 427
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	3 cut(s)	8, 251, 728
Eco57I	CTGAAG	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	178
EcoO109I	RGGNCCY	2 cut(s)	109, 269
EcoRII	CCWGG	2 cut(s)	105, 712
EcoT14I	CCWWGG	2 cut(s)	56, 427
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	56, 427
FaeI	CATG	3 cut(s)	404, 431, 560
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	400, 427, 556
FauNDI	CATATG	1 cut(s)	565
FblI	GTMKAC	2 cut(s)	218, 228
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	2 cut(s)	41, 462
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	2 cut(s)	57, 120
GlaI	GCGC	2 cut(s)	345, 562
GluI	GCNGC	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	111, 270, 611
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	2 cut(s)	346, 563
Hin1II	CATG	3 cut(s)	404, 431, 560
Hin6I	GCGC	2 cut(s)	344, 561
HinP1I	GCGC	2 cut(s)	344, 561
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	550, 646
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	362, 416
Hpy166II	GTNNAC	4 cut(s)	219, 229, 370, 728
Hpy188I	TCNGA	2 cut(s)	248, 685
Hpy8I	GTNNAC	4 cut(s)	219, 229, 370, 728
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	282, 571, 734
HpyCH4III	ACNGT	3 cut(s)	72, 97, 661
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	195, 297, 416
HpyF3I	CTNAG	3 cut(s)	178, 309, 394
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	404, 431, 560
HspAI	GCGC	2 cut(s)	344, 561
Kzo9I	GATC	3 cut(s)	33, 155, 690
LmnI	GCTCC	2 cut(s)	313, 501
Lsp1109I	GCAGC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	57, 120
MaeII	ACGT	1 cut(s)	215
MalI	GATC	3 cut(s)	35, 157, 692
MboI	GATC	3 cut(s)	33, 155, 690
MflI	RGATCY	3 cut(s)	33, 155, 690
MhlI	GDGCHC	2 cut(s)	113, 318
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	4 cut(s)	441, 461, 534, 605
MluNI	TGGCCA	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	725
MnlI	CCTC	9 cut(s)	146, 242, 260, 330, 463, 499, 615, 717, 720
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	465, 516
MslI	CAYNNNNRTG	2 cut(s)	432, 568
Msp20I	TGGCCA	1 cut(s)	611
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	107, 113, 714
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	2 cut(s)	107, 714
MvnI	CGCG	1 cut(s)	344
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	3 cut(s)	33, 155, 690
NlaIII	CATG	3 cut(s)	404, 431, 560
NlaIV	GGNNCC	5 cut(s)	10, 111, 117, 157, 208
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	550, 646
PflFI	GACNNNGTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	595
Ppu21I	YACGTR	1 cut(s)	216
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	105, 712
PspGI	CCWGG	2 cut(s)	105, 712
PspN4I	GGNNCC	5 cut(s)	10, 111, 117, 157, 208
PspOMI	GGGCCC	1 cut(s)	109
PspPI	GGNCC	6 cut(s)	8, 109, 110, 251, 269, 728
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	3 cut(s)	33, 155, 690
PsyI	GACNNNGTC	1 cut(s)	401
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	2 cut(s)	432, 568
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	465, 516
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	33, 155, 690
Sau96I	GGNCC	6 cut(s)	8, 109, 110, 251, 269, 728
ScrFI	CCNGG	3 cut(s)	107, 113, 714
SduI	GDGCHC	2 cut(s)	113, 318
SinI	GGWCC	3 cut(s)	8, 251, 728
SmiMI	CAYNNNNRTG	2 cut(s)	432, 568
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SnaBI	TACGTA	1 cut(s)	216
Sse9I	AATT	4 cut(s)	441, 461, 534, 605
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	57, 120
StyD4I	CCNGG	3 cut(s)	105, 111, 712
StyI	CCWWGG	2 cut(s)	56, 427
TaaI	ACNGT	3 cut(s)	72, 97, 661
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	139, 228
TaqII	GACCGA	1 cut(s)	745
TasI	AATT	4 cut(s)	441, 461, 534, 605
TfiI	GAWTC	2 cut(s)	550, 646
Tru1I	TTAA	2 cut(s)	465, 516
Tru9I	TTAA	2 cut(s)	465, 516
TscAI	CASTG	4 cut(s)	166, 261, 294, 516
TseI	GCWGC	1 cut(s)	593
TspDTI	ATGAA	7 cut(s)	65, 80, 450, 474, 582, 669, 749
TspRI	CASTG	4 cut(s)	166, 261, 294, 516
Tth111I	GACNNNGTC	1 cut(s)	401
Van91I	CCANNNNNTGG	1 cut(s)	260
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	3 cut(s)	8, 251, 728
XapI	RAATTY	2 cut(s)	461, 534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmaJI	CCTAGG	1 cut(s)	56
XmiI	GTMKAC	2 cut(s)	218, 228
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	57, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.