Rh5BG393800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001195
Physical Location & Seq
Reverse (-)
63342031 .. 63343163
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG393800.1

Sequence Viewer

Length: 354 bp
ATGGCTGGACCCGACGCAAGCTTTGTGGATGAGATCTGCCAGGGAGATGAAACTGTTTCAAAAGGCGTAAGAAACCTAGCCATCTTCTTTGAGACTCTCGGCGCCTCTTCTCCCGGCACCTATACCTATACTCCTGTCGACTTCAGGTCCAAGTTCAGAAGACCAGTGACTGGTGGAGATGCTTCTATGGACAAAGGAGTACCTTGCAATGAGTGTTCTAAGGAGCACCCCCCCCTTATTCTTATTGCCCTTATGCGCCTTGTCATATTTGTTATAAGGTTCACCACCATAGTTATTGCCCTTCCTTCGACCATATCCCACAGGGTGCAACTTTTGATCATGGCTATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.79

Weight (kDa)

7.74

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 101, 116
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 60
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 170
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 2 cut(s) 104, 258
AspS9I GGNCC 2 cut(s) 8, 147
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 2 cut(s) 8, 147
BanI GGYRCC 2 cut(s) 101, 116
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 41
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 105
BglII AGATCT 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 41, 114
Bme18I GGWCC 2 cut(s) 8, 147
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 8, 147
BmiI GGNNCC 3 cut(s) 10, 103, 118
BmrFI CCNGG 2 cut(s) 41, 114
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 164, 175
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 164, 175
BshNI GGYRCC 2 cut(s) 101, 116
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 33, 336
BspLI GGNNCC 3 cut(s) 10, 103, 118
BspT107I GGYRCC 2 cut(s) 101, 116
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 2 cut(s) 164, 175
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 2 cut(s) 33, 336
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 104, 258
BstKTI GATC 2 cut(s) 36, 339
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 33, 336
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 39, 112
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 2 cut(s) 104, 258
Cfr13I GGNCC 2 cut(s) 8, 147
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 340
CviJI RGCY 4 cut(s) 5, 21, 80, 344
CviKI_1 RGCY 4 cut(s) 5, 21, 80, 344
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 219
DinI GGCGCC 1 cut(s) 103
DpnI GATC 2 cut(s) 35, 338
DpnII GATC 2 cut(s) 33, 336
DraIII CACNNNGTG 1 cut(s) 325
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 8, 147
Eco57I CTGAAG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 1 cut(s) 343
FaiI YATR 9 cut(s) 123, 129, 188, 254, 266, 275, 290, 314, 341
FatI CATG 1 cut(s) 339
FbaI TGATCA 1 cut(s) 336
FblI GTMKAC 1 cut(s) 138
FokI GGATG 1 cut(s) 41
FspBI CTAG 1 cut(s) 77
GlaI GCGC 2 cut(s) 103, 257
HaeII RGCGCY 1 cut(s) 105
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 104, 258
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 2 cut(s) 102, 256
HinP1I GCGC 2 cut(s) 102, 256
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 139, 282
Hpy188I TCNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 139, 282
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 311, 315
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 207, 328
HpyF3I CTNAG 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 2 cut(s) 102, 256
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 2 cut(s) 33, 336
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 8 cut(s) 26, 53, 127, 130, 147, 156, 177, 307
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 35, 338
MboI GATC 2 cut(s) 33, 336
MboII GAAGA 3 cut(s) 76, 99, 171
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 228
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 1 cut(s) 115
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 41, 114
MvaI CCWGG 1 cut(s) 41
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 1 cut(s) 114
NdeII GATC 2 cut(s) 33, 336
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 3 cut(s) 10, 103, 118
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 170
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 88
PsiI TTATAA 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 3 cut(s) 10, 103, 118
PspPI GGNCC 2 cut(s) 8, 147
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SalI GTCGAC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 33, 336
Sau96I GGNCC 2 cut(s) 8, 147
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 41, 114
SduI GDGCHC 1 cut(s) 228
SetI ASST 7 cut(s) 23, 78, 122, 128, 149, 205, 281
SfaNI GCATC 1 cut(s) 169
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 2 cut(s) 8, 147
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 39, 112
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 138, 308
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 8, 147
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.