Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003525.1

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

115294 .. 116595

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003525.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggctggacccgacgcaagctgtgtggatgagatctgccagggagatgaaactgtttcaaaaggcgtaagaaacctagccatcttctttgagactctcggcgcctcttctcccgatacaaggaaacagttcagttccagggcccgggtacctagttctaaaatcagcaatcgaaaaggttgcggaggatccactggttcaggttttgccttaggtattgggtactgcaaacaagcaggcacctatactgaatttaatgaggataagtgggtttgtacctcttgtggtgggagcagagcaatgcttaaggccaagtattgtaacatttgtaacagtgtgaaacagcaccgcgcatatgaatgcccgaaggacaaggttcttgccgccaagtataaattggccagagacaagaggtgttcagttgtgccgaataggattccatatcacattgcctatataccagaatcatcatcaggaaagatctatgttccaactcctcctcctggatgggttcgcggacacatgaaagaaggctcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.41

Weight (kDa)

9.33

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	3 cut(s)	101, 148, 239
AccII	CGCG	2 cut(s)	351, 516
AciI	CCGC	4 cut(s)	183, 349, 384, 516
AclWI	GGATC	2 cut(s)	183, 196
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	3 cut(s)	150, 224, 277
AfiI	CCNNNNNNNGG	3 cut(s)	120, 144, 503
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	3 cut(s)	39, 137, 502
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	86, 399
AlwI	GGATC	2 cut(s)	183, 196
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	3 cut(s)	141, 309, 399
ApaI	GGGCCC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	128
Asp718I	GGTACC	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	104, 353
AspS9I	GGNCC	3 cut(s)	8, 141, 142
AsuC2I	CCSGG	2 cut(s)	145, 146
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	188
BanI	GGYRCC	3 cut(s)	101, 148, 239
BanII	GRGCYC	1 cut(s)	145
BccI	CCATC	2 cut(s)	89, 501
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	3 cut(s)	41, 139, 504
BcnI	CCSGG	2 cut(s)	145, 146
BcoDI	GTCTC	2 cut(s)	86, 399
BfaI	CTAG	2 cut(s)	77, 153
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	305
BglII	AGATCT	2 cut(s)	33, 480
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	5 cut(s)	41, 139, 145, 146, 504
Bme18I	GGWCC	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	3 cut(s)	8, 141, 142
BmiI	GGNNCC	6 cut(s)	10, 103, 143, 150, 190, 241
BmrFI	CCNGG	5 cut(s)	41, 139, 145, 146, 504
BpuMI	CCSGG	2 cut(s)	145, 146
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	40, 138, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 144, 503
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	306, 447
BseBI	CCWGG	3 cut(s)	41, 139, 504
BseDI	CCNNGG	3 cut(s)	40, 138, 144
BseGI	GGATG	2 cut(s)	34, 512
BseLI	CCNNNNNNNGG	3 cut(s)	120, 144, 503
BseMI	GCAATG	2 cut(s)	306, 447
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	486, 489
BseSI	GKGCMC	1 cut(s)	145
Bsh1236I	CGCG	2 cut(s)	351, 516
BshFI	GGCC	3 cut(s)	143, 311, 401
BshNI	GGYRCC	3 cut(s)	101, 148, 239
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	120, 144, 503
BsmAI	GTCTC	2 cut(s)	86, 399
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	143, 311, 401
BsoBI	CYCGRG	1 cut(s)	144
Bsp120I	GGGCCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	33, 188, 480
BspACI	CCGC	4 cut(s)	183, 349, 384, 516
BspANI	GGCC	3 cut(s)	143, 311, 401
BspFNI	CGCG	2 cut(s)	351, 516
BspLI	GGNNCC	6 cut(s)	10, 103, 143, 150, 190, 241
BspPI	GGATC	2 cut(s)	183, 196
BspT107I	GGYRCC	3 cut(s)	101, 148, 239
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	306, 447
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	40, 138, 144
BssMI	GATC	3 cut(s)	33, 188, 480
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	3 cut(s)	41, 139, 504
Bst4CI	ACNGT	3 cut(s)	55, 129, 335
Bst6I	CTCTTC	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	19, 238
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	34, 512
BstFNI	CGCG	2 cut(s)	351, 516
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	104, 353
BstKTI	GATC	3 cut(s)	36, 191, 483
BstMAI	GTCTC	2 cut(s)	86, 399
BstMBI	GATC	3 cut(s)	33, 188, 480
BstNI	CCWGG	3 cut(s)	41, 139, 504
BstSCI	CCNGG	5 cut(s)	39, 137, 143, 144, 502
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	2 cut(s)	351, 516
BstX2I	RGATCY	3 cut(s)	33, 188, 480
BstYI	RGATCY	3 cut(s)	33, 188, 480
Bsu36I	CCTNAGG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	143, 311, 401
BtsCI	GGATG	2 cut(s)	34, 512
BtsIMutI	CAGTG	2 cut(s)	192, 340
Cac8I	GCNNGC	2 cut(s)	19, 238
CfoI	GCGC	2 cut(s)	104, 353
Cfr13I	GGNCC	3 cut(s)	8, 141, 142
Cfr9I	CCCGGG	1 cut(s)	144
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	3 cut(s)	149, 223, 276
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	1 cut(s)	523
CviJI	RGCY	7 cut(s)	5, 21, 80, 143, 311, 401, 534
CviKI_1	RGCY	7 cut(s)	5, 21, 80, 143, 311, 401, 534
CviQI	GTAC	3 cut(s)	149, 223, 276
DdeI	CTNAG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	3 cut(s)	35, 190, 482
DpnII	GATC	3 cut(s)	33, 188, 480
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	3 cut(s)	39, 137, 502
EcoT38I	GRGCYC	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
FaeI	CATG	1 cut(s)	526
FaiI	YATR	9 cut(s)	246, 355, 357, 393, 442, 456, 458, 486, 524
FatI	CATG	1 cut(s)	522
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	2 cut(s)	41, 519
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	2 cut(s)	77, 153
GlaI	GCGC	2 cut(s)	103, 352
GluI	GCNGC	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	143, 311, 401
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	2 cut(s)	104, 353
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	526
Hin6I	GCGC	2 cut(s)	102, 351
HinP1I	GCGC	2 cut(s)	102, 351
HinfI	GANTC	3 cut(s)	94, 436, 464
HpaII	CCGG	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	113, 474
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	361, 524
HpyCH4III	ACNGT	3 cut(s)	55, 129, 335
HpyCH4V	TGCA	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	526
HspAI	GCGC	2 cut(s)	102, 351
KasI	GGCGCC	1 cut(s)	101
KpnI	GGTACC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	33, 188, 480
LmnI	GCTCC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	77, 153
MaeIII	GTNAC	2 cut(s)	320, 329
MalI	GATC	3 cut(s)	35, 190, 482
MboI	GATC	3 cut(s)	33, 188, 480
MboII	GAAGA	2 cut(s)	76, 99
MflI	RGATCY	3 cut(s)	33, 188, 480
MhlI	GDGCHC	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	2 cut(s)	251, 395
MluNI	TGGCCA	1 cut(s)	401
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	7 cut(s)	115, 179, 253, 289, 405, 507, 510
Mox20I	TGGCCA	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	2 cut(s)	255, 306
MslI	CAYNNNNRTG	1 cut(s)	358
Msp20I	TGGCCA	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	5 cut(s)	41, 139, 145, 146, 504
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	3 cut(s)	41, 139, 504
MvnI	CGCG	2 cut(s)	351, 516
NarI	GGCGCC	1 cut(s)	102
NciI	CCSGG	2 cut(s)	145, 146
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	33, 188, 480
NlaIII	CATG	1 cut(s)	526
NlaIV	GGNNCC	6 cut(s)	10, 103, 143, 150, 190, 241
NmeAIII	GCCGAG	1 cut(s)	78
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	436, 464
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	39, 137, 502
PspGI	CCWGG	3 cut(s)	39, 137, 502
PspN4I	GGNNCC	6 cut(s)	10, 103, 143, 150, 190, 241
PspOMI	GGGCCC	1 cut(s)	141
PspPI	GGNCC	3 cut(s)	8, 141, 142
PsuI	RGATCY	3 cut(s)	33, 188, 480
RsaI	GTAC	3 cut(s)	150, 224, 277
RsaNI	GTAC	3 cut(s)	149, 223, 276
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	255, 306
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	3 cut(s)	33, 188, 480
Sau96I	GGNCC	3 cut(s)	8, 141, 142
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	5 cut(s)	41, 139, 145, 146, 504
SduI	GDGCHC	1 cut(s)	145
SfoI	GGCGCC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	8
SmaI	CCCGGG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	251, 395
SsiI	CCGC	4 cut(s)	183, 349, 384, 516
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	77, 153
StyD4I	CCNGG	5 cut(s)	39, 137, 143, 144, 502
TaaI	ACNGT	3 cut(s)	55, 129, 335
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	251, 395
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	436, 464
Tru1I	TTAA	2 cut(s)	255, 306
Tru9I	TTAA	2 cut(s)	255, 306
TscAI	CASTG	2 cut(s)	199, 340
TspDTI	ATGAA	3 cut(s)	63, 372, 539
TspMI	CCCGGG	1 cut(s)	144
TspRI	CASTG	2 cut(s)	199, 340
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmaI	CCCGGG	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	2 cut(s)	77, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.