FvH4_2g00470

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000727
Physical Location & Seq
Reverse (-)
549451 .. 551657
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00470.t1

Sequence Viewer

Length: 1581 bp
ATGAAGCCTCTCACCAACAAGCCATCTTTGTTTCCACCATTTTGGTCATCTTCTACTTCTTATTCTTCTTCTTCAGCATTCATTCTAGTGCTTGTAGCTCTCGTTTGCACGTTGGGCGTCACAGTTTCTTTTTCATGGTCATGGAGAGTTAATACCGTACTAGGTACTGGCTACTCTTCATCACTAGCTTTCTCAACAAAATCAAGGCCAAATTCTCAAGTAGTGAATGAAGAAGCTGCACCAGAAGCTCACCCTATTGTCAGTCCATCAAATGATTCAGAACCAAATGGAACAGTACATCTTCCCCACTCTCAAATTGTAGAAAAACAAGAGGTAGCAGTGTTGAATGATAAAGAATCTGGTGAGATCAATGCTACTACTGCATCTGAGACAATAACTATAAAGAGATATAGCAGGTTAGAGAAACTTGAAGCAAGTTTGGCTGGAGTTCGAGCTTCCATAAGAGAAGCTGCTCGAGTTCGAAATCTGACTTCTACTCATGAAGATCCAGACTATGTTCCTCAAGGTCCAATATATAGAAATGCAAATGCTTTTCACAGGAGTTACTTGGAGATGGAAAGGCTGTTCAAGATATATGTATACCAAGAAGGAGATCCACCCATATTTCATAATGGTCCATGCAAGAGCATATACTCTACAGAAGGAATGTTCATTCATGAAATGGAAATGGACAATACTTATAGGACAAAAAATCCAGATGATGCCCTTGTTTATTTTCTCCCATTCAGTGTGGTGATGTTGGTTCAGTACCTCTATGAGGCTGAGTCCCATAGCACTGAGTCCATAGGTCGTGCAGTGGTTGACTATGTCAATGTCATCTCTGATAAGCATCCCTTTTGGAATCGAAGCCTTGGTGCAGATCACTTTATGCTTTCCTGCCACGATTGGGGGCCTCGCACATCTTCTTATGTTCCTCAGCTATACCACAAGTCCATAAGAGTATTATGCAATGCAAACACTTCAGAAGGATTCAATCCTTCCAAAGATGTGTCATTTCCAGAAATCCATCTCCGAACTGGCGAAACCAAAGGACTTCTCGGTGGTCTCTCACCCTCTCGCCGGTCAGTTCTTGCCTTCTTTGCAGGCCGGCTTCATGGCCACATAAGATGCCTGCTTTTAAATGAATGGAAAGAAAAAGACCAAGATGTGCAAGTTTATGACCAACTTCCAAATGGGGTATCCTACGAGTCGATGTTAAAGCAGAGCAAGTTCTGCTTGTGCCCCAGCGGCTACGAAGTCGCAAGCCCAAGAATTGTGGAAGCCATCTATGCAGAATGCGTGCCGGTGTTGATTTCGGATAACTATGTTCCACCTTTCAGTGATGTCTTAGAGTGGAAGACATTTTCAGTCCAAGTACAAGTGAAGGATATACCAAATATCAAAACAATACTAATGGGAATATCTCAGAGTCAGTACCTGAGAATGCACAGGAGAGTGAAACTGGTGCAGAGGCATTTTGTGGTGAATGGACCTTCCAAGAGATATGACGTTTTCAACATGATAGTTCATTCTATTTGGCTCAGGAGGTTGAATATCCGCATTGAGGATCAACTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

527

Amino Acids

59.62

Weight (kDa)

6.82

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 193 - 472 7.3e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 600
AciI CCGC 2 cut(s) 1248, 1558
AclWI GGATC 3 cut(s) 500, 608, 1575
AcoI YGGCCR 1 cut(s) 1117
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 2 cut(s) 57, 966
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 6 cut(s) 159, 166, 297, 770, 1377, 1436
AfiI CCNNNNNNNGG 4 cut(s) 778, 907, 1080, 1564
AgsI TTSAA 6 cut(s) 346, 431, 589, 994, 1516, 1552
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
AluBI AGCT 7 cut(s) 98, 188, 236, 248, 455, 470, 940
AluI AGCT 7 cut(s) 98, 188, 236, 248, 455, 470, 940
Alw26I GTCTC 2 cut(s) 383, 1070
AlwI GGATC 3 cut(s) 500, 608, 1575
AlwNI CAGNNNCTG 1 cut(s) 1438
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 4 cut(s) 206, 911, 1105, 1117
ApeKI GCWGC 2 cut(s) 236, 470
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 4 cut(s) 527, 635, 911, 1490
AsuHPI GGTGA 6 cut(s) 4, 242, 374, 766, 1062, 1495
AsuII TTCGAA 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 3 cut(s) 527, 635, 1490
BaeGI GKGCMC 1 cut(s) 1244
BalI TGGCCA 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 1364
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 2 cut(s) 223, 457
BccI CCATC 5 cut(s) 31, 274, 568, 1035, 1292
BciVI GTATCC 1 cut(s) 1210
BcoDI GTCTC 2 cut(s) 383, 1070
BfaI CTAG 3 cut(s) 86, 161, 185
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 405
BfuI GTATCC 1 cut(s) 1210
BglI GCCNNNNNGGC 1 cut(s) 1248
BisI GCNGC 3 cut(s) 237, 471, 1249
BlsI GCNGC 3 cut(s) 238, 472, 1250
Bme18I GGWCC 3 cut(s) 527, 635, 1490
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 4 cut(s) 527, 635, 911, 1490
BmiI GGNNCC 1 cut(s) 912
BmsI GCATC 4 cut(s) 392, 712, 859, 1118
BpiI GAAGAC 1 cut(s) 1364
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 2 cut(s) 936, 1541
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 201, 507
BsaBI GATNNNNATC 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 1070
BsaJI CCNNGG 1 cut(s) 871
Bsc4I CCNNNNNNNGG 4 cut(s) 778, 907, 1080, 1564
Bse118I RCCGGY 3 cut(s) 1080, 1107, 1303
Bse1I ACTGG 3 cut(s) 172, 1042, 1467
Bse3DI GCAATG 1 cut(s) 976
Bse8I GATNNNNATC 1 cut(s) 849
BseDI CCNNGG 1 cut(s) 871
BseGI GGATG 1 cut(s) 850
BseJI GATNNNNATC 1 cut(s) 849
BseLI CCNNNNNNNGG 4 cut(s) 778, 907, 1080, 1564
BseMI GCAATG 1 cut(s) 976
BseMII CTCAG 7 cut(s) 378, 774, 789, 950, 1430, 1439, 1555
BseNI ACTGG 3 cut(s) 172, 1042, 1467
BseSI GKGCMC 1 cut(s) 1244
BseXI GCAGC 2 cut(s) 223, 457
BseYI CCCAGC 1 cut(s) 1244
BsgI GTGCAG 4 cut(s) 222, 834, 897, 1487
BshFI GGCC 4 cut(s) 208, 913, 1107, 1119
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 3 cut(s) 1081, 1108, 1304
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 4 cut(s) 778, 907, 1080, 1564
BsmAI GTCTC 2 cut(s) 383, 1070
BsmFI GGGAC 1 cut(s) 772
BsmI GAATGC 3 cut(s) 77, 1301, 1449
BsnI GGCC 4 cut(s) 208, 913, 1107, 1119
Bso31I GGTCTC 1 cut(s) 1070
BsoBI CYCGRG 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 1244
Bsp143I GATC 5 cut(s) 366, 505, 613, 880, 1567
BspACI CCGC 2 cut(s) 1248, 1558
BspANI GGCC 4 cut(s) 208, 913, 1107, 1119
BspCNI CTCAG 7 cut(s) 379, 775, 790, 949, 1431, 1438, 1554
BspHI TCATGA 2 cut(s) 499, 676
BspLI GGNNCC 1 cut(s) 912
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 3 cut(s) 500, 608, 1575
BspT104I TTCGAA 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 976
BsrFI RCCGGY 3 cut(s) 1080, 1107, 1303
BsrI ACTGG 3 cut(s) 172, 1042, 1467
BssAI RCCGGY 3 cut(s) 1080, 1107, 1303
BssECI CCNNGG 1 cut(s) 871
BssMI GATC 5 cut(s) 366, 505, 613, 880, 1567
BssNAI GTATAC 1 cut(s) 601
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 871
Bst1107I GTATAC 1 cut(s) 601
Bst4CI ACNGT 3 cut(s) 124, 157, 295
Bst6I CTCTTC 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 1233
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 5 cut(s) 1105, 1109, 1133, 1264, 1301
BstDEI CTNAG 8 cut(s) 387, 783, 798, 936, 1348, 1425, 1439, 1541
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 1 cut(s) 850
BstKTI GATC 5 cut(s) 369, 508, 616, 883, 1570
BstMAI GTCTC 2 cut(s) 383, 1070
BstMBI GATC 5 cut(s) 366, 505, 613, 880, 1567
BstMWI GCNNNNNNNGC 8 cut(s) 114, 245, 380, 440, 1100, 1233, 1248, 1289
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 1244
BstV1I GCAGC 2 cut(s) 223, 457
BstV2I GAAGAC 1 cut(s) 1364
BstX2I RGATCY 2 cut(s) 505, 613
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 2 cut(s) 505, 613
BstZ17I GTATAC 1 cut(s) 601
BsuI GTATCC 1 cut(s) 1210
BsuRI GGCC 4 cut(s) 208, 913, 1107, 1119
BtsCI GGATG 1 cut(s) 850
BtsI GCAGTG 2 cut(s) 345, 822
BtsIMutI CAGTG 5 cut(s) 345, 754, 795, 822, 1345
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 5 cut(s) 1105, 1109, 1133, 1264, 1301
CaiI CAGNNNCTG 1 cut(s) 1438
CciI TCATGA 2 cut(s) 499, 676
Cfr10I RCCGGY 3 cut(s) 1080, 1107, 1303
Cfr13I GGNCC 4 cut(s) 527, 635, 911, 1490
CseI GACGC 1 cut(s) 106
Csp6I GTAC 6 cut(s) 158, 165, 296, 769, 1376, 1435
CspCI CAANNNNNGTGG 2 cut(s) 1257, 1292
CviAII CATG 7 cut(s) 135, 141, 500, 639, 677, 1115, 1519
CviQI GTAC 6 cut(s) 158, 165, 296, 769, 1376, 1435
DdeI CTNAG 8 cut(s) 387, 783, 798, 936, 1348, 1425, 1439, 1541
DpnI GATC 5 cut(s) 368, 507, 615, 882, 1569
DpnII GATC 5 cut(s) 366, 505, 613, 880, 1567
DraI TTTAAA 1 cut(s) 1140
EaeI YGGCCR 1 cut(s) 1117
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 871
Eco31I GGTCTC 1 cut(s) 1070
Eco47I GGWCC 3 cut(s) 527, 635, 1490
Eco57I CTGAAG 2 cut(s) 57, 966
Eco88I CYCGRG 1 cut(s) 474
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 911
EcoT14I CCWWGG 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 871
FaeI CATG 7 cut(s) 138, 144, 503, 642, 680, 1118, 1522
FalI AAGNNNNNCTT 4 cut(s) 839, 871, 1220, 1252
FaqI GGGAC 1 cut(s) 772
FatI CATG 7 cut(s) 134, 140, 499, 638, 676, 1114, 1518
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 3 cut(s) 237, 471, 1249
FokI GGATG 1 cut(s) 837
Fsp4HI GCNGC 3 cut(s) 237, 471, 1249
FspBI CTAG 3 cut(s) 86, 161, 185
GluI GCNGC 3 cut(s) 237, 471, 1249
GsaI CCCAGC 1 cut(s) 1248
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 4 cut(s) 208, 913, 1107, 1119
HapII CCGG 3 cut(s) 1081, 1108, 1304
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 7 cut(s) 138, 144, 503, 642, 680, 1118, 1522
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HinfI GANTC 8 cut(s) 275, 356, 785, 800, 862, 990, 1208, 1429
HpaII CCGG 3 cut(s) 1081, 1108, 1304
HphI GGTGA 6 cut(s) 4, 242, 374, 766, 1062, 1495
Hpy166II GTNNAC 2 cut(s) 601, 823
Hpy188I TCNGA 8 cut(s) 280, 388, 489, 844, 985, 1034, 1318, 1428
Hpy188III TCNNGA 7 cut(s) 500, 509, 589, 677, 716, 1019, 1543
Hpy8I GTNNAC 2 cut(s) 601, 823
HpyAV CCTTC 7 cut(s) 602, 656, 980, 1008, 1105, 1378, 1503
HpyCH4III ACNGT 3 cut(s) 124, 157, 295
HpyCH4IV ACGT 2 cut(s) 110, 1509
HpyF10VI GCNNNNNNNGC 8 cut(s) 114, 245, 380, 440, 1100, 1233, 1248, 1289
HpyF3I CTNAG 8 cut(s) 387, 783, 798, 936, 1348, 1425, 1439, 1541
HpySE526I ACGT 2 cut(s) 110, 1509
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 7 cut(s) 138, 144, 503, 642, 680, 1118, 1522
KroI GCCGGC 1 cut(s) 1107
KroNI GCCGGC 1 cut(s) 1109
Kzo9I GATC 5 cut(s) 366, 505, 613, 880, 1567
Lsp1109I GCAGC 2 cut(s) 223, 457
LweI GCATC 4 cut(s) 392, 712, 859, 1118
MaeI CTAG 3 cut(s) 86, 161, 185
MaeII ACGT 2 cut(s) 110, 1509
MaeIII GTNAC 2 cut(s) 118, 563
MalI GATC 5 cut(s) 368, 507, 615, 882, 1569
MboI GATC 5 cut(s) 366, 505, 613, 880, 1567
MflI RGATCY 2 cut(s) 505, 613
MhlI GDGCHC 1 cut(s) 1244
MlsI TGGCCA 1 cut(s) 1119
MluCI AATT 3 cut(s) 211, 315, 1272
MluNI TGGCCA 1 cut(s) 1119
MlyI GAGTC 4 cut(s) 794, 809, 1217, 1438
Mox20I TGGCCA 1 cut(s) 1119
MroNI GCCGGC 1 cut(s) 1107
MscI TGGCCA 1 cut(s) 1119
MseI TTAA 3 cut(s) 150, 1139, 1217
MslI CAYNNNNRTG 2 cut(s) 86, 139
Msp20I TGGCCA 1 cut(s) 1119
MspA1I CMGCKG 1 cut(s) 1248
MspI CCGG 3 cut(s) 1081, 1108, 1304
Mva1269I GAATGC 3 cut(s) 77, 1301, 1449
MwoI GCNNNNNNNGC 8 cut(s) 114, 245, 380, 440, 1100, 1233, 1248, 1289
NaeI GCCGGC 1 cut(s) 1109
NdeII GATC 5 cut(s) 366, 505, 613, 880, 1567
NgoMIV GCCGGC 1 cut(s) 1107
NlaIII CATG 7 cut(s) 138, 144, 503, 642, 680, 1118, 1522
NlaIV GGNNCC 1 cut(s) 912
NmuCI GTSAC 1 cut(s) 118
NspV TTCGAA 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 474
PagI TCATGA 2 cut(s) 499, 676
PctI GAATGC 3 cut(s) 77, 1301, 1449
PdiI GCCGGC 1 cut(s) 1109
PfeI GAWTC 4 cut(s) 275, 356, 862, 990
PflFI GACNNNGTC 1 cut(s) 827
PkrI GCNGC 3 cut(s) 238, 472, 1250
PleI GAGTC 4 cut(s) 793, 808, 1216, 1437
PpsI GAGTC 4 cut(s) 793, 808, 1216, 1437
PspFI CCCAGC 1 cut(s) 1244
PspN4I GGNNCC 1 cut(s) 912
PspPI GGNCC 4 cut(s) 527, 635, 911, 1490
PspXI VCTCGAGB 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 1438
PsuI RGATCY 2 cut(s) 505, 613
PsyI GACNNNGTC 1 cut(s) 827
RsaI GTAC 6 cut(s) 159, 166, 297, 770, 1377, 1436
RsaNI GTAC 6 cut(s) 158, 165, 296, 769, 1376, 1435
RseI CAYNNNNRTG 2 cut(s) 86, 139
SaqAI TTAA 3 cut(s) 150, 1139, 1217
SatI GCNGC 3 cut(s) 237, 471, 1249
Sau3AI GATC 5 cut(s) 366, 505, 613, 880, 1567
Sau96I GGNCC 4 cut(s) 527, 635, 911, 1490
SchI GAGTC 4 cut(s) 794, 809, 1217, 1438
SduI GDGCHC 1 cut(s) 1244
SfaNI GCATC 4 cut(s) 392, 712, 859, 1118
SfcI CTRYAG 1 cut(s) 657
Sfr274I CTCGAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 3 cut(s) 527, 635, 1490
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 2 cut(s) 86, 139
SmlI CTYRAG 3 cut(s) 216, 474, 522
SmoI CTYRAG 3 cut(s) 216, 474, 522
Sse9I AATT 3 cut(s) 211, 315, 1272
SsiI CCGC 2 cut(s) 1248, 1558
SspMI CTAG 3 cut(s) 86, 161, 185
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 3 cut(s) 124, 157, 295
TaiI ACGT 2 cut(s) 113, 1512
TaqI TCGA 6 cut(s) 451, 475, 481, 865, 1211, 1575
TasI AATT 3 cut(s) 211, 315, 1272
TatI WGTACW 2 cut(s) 295, 1375
TauI GCSGC 1 cut(s) 1251
TfiI GAWTC 4 cut(s) 275, 356, 862, 990
Tru1I TTAA 3 cut(s) 150, 1139, 1217
Tru9I TTAA 3 cut(s) 150, 1139, 1217
TscAI CASTG 5 cut(s) 345, 754, 802, 822, 1345
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 236, 470
Tsp45I GTSAC 1 cut(s) 118
TspRI CASTG 5 cut(s) 345, 754, 802, 822, 1345
Tth111I GACNNNGTC 1 cut(s) 827
VpaK11BI GGWCC 3 cut(s) 527, 635, 1490
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 2 cut(s) 1034, 1190
XhoI CTCGAG 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 600
XspI CTAG 3 cut(s) 86, 161, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.