Rh6DG003900

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000727
Physical Location & Seq
Reverse (-)
474475 .. 485100
10626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG003900.1

Sequence Viewer

Length: 1575 bp
ATGAAGCCTCTCAACAACAAGCCATCTTTGTTTTCACCATTTTGGTCATCTTCTACTTCTTCTTCTTCGGTTTTGATTCTAGTGCTTGTAGTTCTCATTTGCACGTTGGGCGTCACAAGTTCGTTTTCATGGTCATGGAGAGTTGGTAACGTACTGGGTACTGACTACTCTTCATCACTAGCTTTCTCAACAAAAGCAAGGTCTAGTTCTCAAGTAGTGCGTGAGGAAGCGGCAGCAGAAGCTCATCCTATTGTCAGTCCTTCATCAAATGATTCAGAACCAAATGAAACAGTACATCTTCCCCCCAATCAAATTGTAGAGCAACAAGAGGTAGTGTTGAATGATAAAGAATTTGGTGAAATTAATGCTACTTCTGCATCTGAAACAGTAAGTATAAAAAGATACAGCAGGTTAGAGAAACTTGAAGCAAGTTTGGCTGGAGTTCGGGCATCCATAAGAGAAGCTGCTCGAGTACGAAATCTGACTTCTACCCATGAAGATCCAGACTATGTTCCTCAAGGTCCAATATATAGAAATGCAAATGCTTTTCACAGGAGTTACTTGGAGATGGAAAGGCTGTTCAAGATATATGTATATCAAGAAGGAGATCCACCCATATTTCATAATGGTCCTTGCAAGAGCATATATTCTACAGAGGGAAGGTTCATTCATGAAATGGAAATGGACAATACTTATAGGACCACAAACCCAGACGAAGCCCTTGTTTATTTTCTTCCATTCAGTGTGGTGATGTTGGTTCAGTACCTCTATGTGGCCGAGTCCCATGACACTGAATCCATTGGTCGTGCTGTGGTTGACTATGTCAATGTCATCTCTGATAAACATCCCTTTTGGAATCGAAGCCTTGGTGCTGACCACTTTATGCTTTCCTGCCATGATTGGGGGCCTCGCACATCTTCTTATGTTCCTCAGCTGTACAACAAGTCCATAAGGGTACTATGCAATGCAAACACTTCGGAAGGATTCAATCCTTCCAAAGATGTGTCATTTCCAGAAATCCATCTCCGAACTGGCGAAACTAAAGGACTTCTCGGTGGTCTCTCCCCCTCTCGCCGGTCAATTCTCGCCTTCTTTGCAGGCCGGCTGCATGGCCACATAAGGTACCTGCTTTTAAATGAATGGAAAGAAAAAGACCAAGATGTGCAAGTTTATGACCAACTTCCCCATGGAGTATCCTATGAGTCAATGTTAAAGCAGAGCAAGTTCTGCTTGTGCCCCAGCGGCTACGAAGTGGCGAGCCCAAGAATTGTAGAAGCCATCTACGCAGAATGCGTGCCGGTCTTGATTTCGGATAATTATGTTCCACCGTTCAGTGATGTTTTAGACTGGAAGTCATTTTCAGTCCAAGTACAAGTGAAGGATATACCAAATATCAAAACAATACTAATGGGAATATCTCAGAGCCAGTACTTGAGAATGCATAGGAGAGTGAAGCTGGTGCAGAGACATTTTGTGGTGAATGGACCTTCCAAGAGATATGACGTTTTCAATATGATTGTTCATTCTATTTGGCTCAGGAGGTTGAATATCCGCATTGAGGATCAGGTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

524

Amino Acids

59.5

Weight (kDa)

6.51

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 191 - 470 4.9e-62 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 399, 1134
Acc65I GGTACC 1 cut(s) 1122
AccB1I GGYRCC 1 cut(s) 1122
AciI CCGC 3 cut(s) 230, 1242, 1552
AclWI GGATC 3 cut(s) 494, 602, 1569
AcoI YGGCCR 2 cut(s) 774, 1111
AcsI RAATTY 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 4 cut(s) 772, 901, 1074, 1558
AgsI TTSAA 6 cut(s) 340, 425, 583, 988, 1510, 1546
AhdI GACNNNNNGTC 1 cut(s) 1351
AloI GAACNNNNNNTCC 2 cut(s) 563, 595
AluBI AGCT 5 cut(s) 182, 242, 464, 934, 1456
AluI AGCT 5 cut(s) 182, 242, 464, 934, 1456
Alw26I GTCTC 2 cut(s) 1064, 1459
AlwI GGATC 3 cut(s) 494, 602, 1569
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 4 cut(s) 774, 905, 1099, 1111
ApeKI GCWGC 3 cut(s) 233, 464, 1105
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AseI ATTAAT 1 cut(s) 363
Asp718I GGTACC 1 cut(s) 1122
AspS9I GGNCC 5 cut(s) 521, 629, 699, 905, 1484
AsuHPI GGTGA 4 cut(s) 27, 368, 760, 1489
AvaI CYCGRG 1 cut(s) 468
AvaII GGWCC 4 cut(s) 521, 629, 699, 1484
BaeGI GKGCMC 1 cut(s) 1238
BalI TGGCCA 1 cut(s) 1113
BanI GGYRCC 1 cut(s) 1122
BanII GRGCYC 1 cut(s) 1262
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 3 cut(s) 245, 451, 1092
BccI CCATC 4 cut(s) 31, 562, 1029, 1286
BcgI CGANNNNNNTGC 2 cut(s) 957, 991
BciVI GTATCC 1 cut(s) 1204
BcoDI GTCTC 2 cut(s) 1064, 1459
BfaI CTAG 3 cut(s) 80, 179, 204
BfmI CTRYAG 1 cut(s) 651
BfuAI ACCTGC 2 cut(s) 399, 1134
BfuI GTATCC 1 cut(s) 1204
BglI GCCNNNNNGGC 1 cut(s) 1242
BisI GCNGC 5 cut(s) 231, 234, 465, 1106, 1243
BlsI GCNGC 5 cut(s) 232, 235, 466, 1107, 1244
BmcAI AGTACT 1 cut(s) 1430
Bme18I GGWCC 4 cut(s) 521, 629, 699, 1484
BmeRI GACNNNNNGTC 1 cut(s) 1351
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 5 cut(s) 521, 629, 699, 905, 1484
BmiI GGNNCC 2 cut(s) 906, 1124
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 386, 458
BmuI ACTGGG 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 459
Bpu10I CCTNAGC 2 cut(s) 930, 1535
BpuEI CTTGAG 3 cut(s) 195, 501, 1453
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 2 cut(s) 865, 1186
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 4 cut(s) 772, 901, 1074, 1558
Bse118I RCCGGY 3 cut(s) 1074, 1101, 1297
Bse1I ACTGG 4 cut(s) 159, 1036, 1352, 1426
Bse3DI GCAATG 1 cut(s) 970
Bse8I GATNNNNATC 1 cut(s) 843
BseDI CCNNGG 2 cut(s) 865, 1186
BseGI GGATG 3 cut(s) 244, 449, 844
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 4 cut(s) 772, 901, 1074, 1558
BseMI GCAATG 1 cut(s) 970
BseMII CTCAG 3 cut(s) 944, 1433, 1549
BseNI ACTGG 4 cut(s) 159, 1036, 1352, 1426
BseSI GKGCMC 1 cut(s) 1238
BseXI GCAGC 3 cut(s) 245, 451, 1092
BseYI CCCAGC 1 cut(s) 1238
BsgI GTGCAG 1 cut(s) 1481
BshFI GGCC 4 cut(s) 776, 907, 1101, 1113
BshNI GGYRCC 1 cut(s) 1122
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 3 cut(s) 1075, 1102, 1298
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 4 cut(s) 772, 901, 1074, 1558
BsmAI GTCTC 2 cut(s) 1064, 1459
BsmFI GGGAC 1 cut(s) 766
BsmI GAATGC 2 cut(s) 1295, 1443
BsnI GGCC 4 cut(s) 776, 907, 1101, 1113
Bso31I GGTCTC 1 cut(s) 1064
BsoBI CYCGRG 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 1238, 1262
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 3 cut(s) 499, 607, 1561
Bsp19I CCATGG 1 cut(s) 1186
BspACI CCGC 3 cut(s) 230, 1242, 1552
BspANI GGCC 4 cut(s) 776, 907, 1101, 1113
BspCNI CTCAG 3 cut(s) 943, 1432, 1548
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 906, 1124
BspMI ACCTGC 2 cut(s) 399, 1134
BspPI GGATC 3 cut(s) 494, 602, 1569
BspT107I GGYRCC 1 cut(s) 1122
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 1 cut(s) 970
BsrFI RCCGGY 3 cut(s) 1074, 1101, 1297
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 4 cut(s) 159, 1036, 1352, 1426
BssAI RCCGGY 3 cut(s) 1074, 1101, 1297
BssECI CCNNGG 2 cut(s) 865, 1186
BssMI GATC 3 cut(s) 499, 607, 1561
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 865, 1186
Bst4CI ACNGT 3 cut(s) 292, 388, 1329
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 1227
BstAUI TGTACA 1 cut(s) 936
BstC8I GCNNGC 4 cut(s) 1099, 1103, 1258, 1295
BstDEI CTNAG 3 cut(s) 930, 1419, 1535
BstDSI CCRYGG 1 cut(s) 1186
BstF5I GGATG 3 cut(s) 244, 449, 844
BstKTI GATC 3 cut(s) 502, 610, 1564
BstMAI GTCTC 2 cut(s) 1064, 1459
BstMBI GATC 3 cut(s) 499, 607, 1561
BstMWI GCNNNNNNNGC 8 cut(s) 108, 239, 374, 434, 1094, 1227, 1242, 1283
BstSFI CTRYAG 1 cut(s) 651
BstSLI GKGCMC 1 cut(s) 1238
BstV1I GCAGC 3 cut(s) 245, 451, 1092
BstX2I RGATCY 2 cut(s) 499, 607
BstYI RGATCY 2 cut(s) 499, 607
BsuI GTATCC 1 cut(s) 1204
BsuRI GGCC 4 cut(s) 776, 907, 1101, 1113
BtgI CCRYGG 1 cut(s) 1186
BtsCI GGATG 3 cut(s) 244, 449, 844
BtsIMutI CAGTG 3 cut(s) 748, 789, 1339
BveI ACCTGC 2 cut(s) 399, 1134
Cac8I GCNNGC 4 cut(s) 1099, 1103, 1258, 1295
CciI TCATGA 1 cut(s) 670
Cfr10I RCCGGY 3 cut(s) 1074, 1101, 1297
Cfr13I GGNCC 5 cut(s) 521, 629, 699, 905, 1484
CseI GACGC 1 cut(s) 100
CviAII CATG 8 cut(s) 129, 135, 494, 671, 785, 896, 1109, 1187
DdeI CTNAG 3 cut(s) 930, 1419, 1535
DpnI GATC 3 cut(s) 501, 609, 1563
DpnII GATC 3 cut(s) 499, 607, 1561
DraI TTTAAA 1 cut(s) 1134
DriI GACNNNNNGTC 1 cut(s) 1351
EaeI YGGCCR 2 cut(s) 774, 1111
Eam1104I CTCTTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 1351
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 865, 1186
Eco24I GRGCYC 1 cut(s) 1262
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 4 cut(s) 521, 629, 699, 1484
Eco88I CYCGRG 1 cut(s) 468
EcoO109I RGGNCCY 1 cut(s) 905
EcoT14I CCWWGG 2 cut(s) 865, 1186
EcoT22I ATGCAT 1 cut(s) 1443
EcoT38I GRGCYC 1 cut(s) 1262
ErhI CCWWGG 2 cut(s) 865, 1186
FaeI CATG 8 cut(s) 132, 138, 497, 674, 788, 899, 1112, 1190
FalI AAGNNNNNCTT 2 cut(s) 1214, 1246
FaqI GGGAC 1 cut(s) 766
FatI CATG 8 cut(s) 128, 134, 493, 670, 784, 895, 1108, 1186
Fnu4HI GCNGC 5 cut(s) 231, 234, 465, 1106, 1243
FokI GGATG 3 cut(s) 231, 436, 831
FriOI GRGCYC 1 cut(s) 1262
Fsp4HI GCNGC 5 cut(s) 231, 234, 465, 1106, 1243
FspBI CTAG 3 cut(s) 80, 179, 204
GluI GCNGC 5 cut(s) 231, 234, 465, 1106, 1243
GsaI CCCAGC 1 cut(s) 1242
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 4 cut(s) 776, 907, 1101, 1113
HapII CCGG 3 cut(s) 1075, 1102, 1298
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 8 cut(s) 132, 138, 497, 674, 788, 899, 1112, 1190
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 7 cut(s) 76, 272, 779, 794, 856, 984, 1202
HpaII CCGG 3 cut(s) 1075, 1102, 1298
HphI GGTGA 4 cut(s) 27, 368, 760, 1489
Hpy166II GTNNAC 1 cut(s) 817
Hpy188I TCNGA 8 cut(s) 277, 382, 483, 838, 979, 1028, 1312, 1422
Hpy188III TCNNGA 7 cut(s) 503, 583, 599, 671, 1013, 1303, 1537
Hpy8I GTNNAC 1 cut(s) 817
HpyAV CCTTC 8 cut(s) 270, 596, 654, 974, 1002, 1099, 1372, 1497
HpyCH4III ACNGT 3 cut(s) 292, 388, 1329
HpyCH4IV ACGT 3 cut(s) 104, 150, 1503
HpyF10VI GCNNNNNNNGC 8 cut(s) 108, 239, 374, 434, 1094, 1227, 1242, 1283
HpyF3I CTNAG 3 cut(s) 930, 1419, 1535
HpySE526I ACGT 3 cut(s) 104, 150, 1503
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 8 cut(s) 132, 138, 497, 674, 788, 899, 1112, 1190
KpnI GGTACC 1 cut(s) 1126
KroI GCCGGC 1 cut(s) 1101
KroNI GCCGGC 1 cut(s) 1103
Kzo9I GATC 3 cut(s) 499, 607, 1561
Lsp1109I GCAGC 3 cut(s) 245, 451, 1092
LweI GCATC 2 cut(s) 386, 458
MaeI CTAG 3 cut(s) 80, 179, 204
MaeII ACGT 3 cut(s) 104, 150, 1503
MaeIII GTNAC 3 cut(s) 112, 146, 557
MalI GATC 3 cut(s) 501, 609, 1563
MboI GATC 3 cut(s) 499, 607, 1561
MboII GAAGA 9 cut(s) 42, 51, 54, 57, 162, 290, 509, 725, 909
MflI RGATCY 2 cut(s) 499, 607
MhlI GDGCHC 2 cut(s) 1238, 1262
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 6 cut(s) 312, 350, 360, 1080, 1266, 1315
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 2 cut(s) 788, 1211
Mox20I TGGCCA 1 cut(s) 1113
Mph1103I ATGCAT 1 cut(s) 1443
MroNI GCCGGC 1 cut(s) 1101
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 3 cut(s) 363, 1133, 1211
MslI CAYNNNNRTG 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 1113
MspA1I CMGCKG 2 cut(s) 934, 1242
MspI CCGG 3 cut(s) 1075, 1102, 1298
Mva1269I GAATGC 2 cut(s) 1295, 1443
MwoI GCNNNNNNNGC 8 cut(s) 108, 239, 374, 434, 1094, 1227, 1242, 1283
NaeI GCCGGC 1 cut(s) 1103
NcoI CCATGG 1 cut(s) 1186
NdeII GATC 3 cut(s) 499, 607, 1561
NgoMIV GCCGGC 1 cut(s) 1101
NlaIII CATG 8 cut(s) 132, 138, 497, 674, 788, 899, 1112, 1190
NlaIV GGNNCC 2 cut(s) 906, 1124
NmeAIII GCCGAG 1 cut(s) 802
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 1443
PaeR7I CTCGAG 1 cut(s) 468
PagI TCATGA 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 1290
PctI GAATGC 2 cut(s) 1295, 1443
PdiI GCCGGC 1 cut(s) 1103
PfeI GAWTC 5 cut(s) 76, 272, 794, 856, 984
PflFI GACNNNGTC 1 cut(s) 821
PkrI GCNGC 5 cut(s) 232, 235, 466, 1107, 1244
PleI GAGTC 2 cut(s) 787, 1210
PpsI GAGTC 2 cut(s) 787, 1210
PshBI ATTAAT 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 1238
PspN4I GGNNCC 2 cut(s) 906, 1124
PspPI GGNCC 5 cut(s) 521, 629, 699, 905, 1484
PspXI VCTCGAGB 1 cut(s) 468
PsuI RGATCY 2 cut(s) 499, 607
PsyI GACNNNGTC 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 934
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 3 cut(s) 363, 1133, 1211
SatI GCNGC 5 cut(s) 231, 234, 465, 1106, 1243
Sau3AI GATC 3 cut(s) 499, 607, 1561
Sau96I GGNCC 5 cut(s) 521, 629, 699, 905, 1484
ScaI AGTACT 1 cut(s) 1430
SchI GAGTC 2 cut(s) 788, 1211
SduI GDGCHC 2 cut(s) 1238, 1262
SfaNI GCATC 2 cut(s) 386, 458
SfcI CTRYAG 1 cut(s) 651
Sfr274I CTCGAG 1 cut(s) 468
SinI GGWCC 4 cut(s) 521, 629, 699, 1484
SlaI CTCGAG 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 4 cut(s) 210, 468, 516, 1432
SmoI CTYRAG 4 cut(s) 210, 468, 516, 1432
Sse9I AATT 6 cut(s) 312, 350, 360, 1080, 1266, 1315
SsiI CCGC 3 cut(s) 230, 1242, 1552
SspMI CTAG 3 cut(s) 80, 179, 204
StyI CCWWGG 2 cut(s) 865, 1186
TaaI ACNGT 3 cut(s) 292, 388, 1329
TaiI ACGT 3 cut(s) 107, 153, 1506
TaqI TCGA 3 cut(s) 469, 859, 1569
TasI AATT 6 cut(s) 312, 350, 360, 1080, 1266, 1315
TatI WGTACW 4 cut(s) 292, 936, 1369, 1428
TauI GCSGC 2 cut(s) 233, 1245
TfiI GAWTC 5 cut(s) 76, 272, 794, 856, 984
Tru1I TTAA 3 cut(s) 363, 1133, 1211
Tru9I TTAA 3 cut(s) 363, 1133, 1211
TscAI CASTG 3 cut(s) 748, 796, 1339
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 233, 464, 1105
Tsp45I GTSAC 1 cut(s) 112
TspRI CASTG 3 cut(s) 748, 796, 1339
Tth111I GACNNNGTC 1 cut(s) 821
VpaK11BI GGWCC 4 cut(s) 521, 629, 699, 1484
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 2 cut(s) 1028, 1184
XhoI CTCGAG 1 cut(s) 468
XspI CTAG 3 cut(s) 80, 179, 204
ZrmI AGTACT 1 cut(s) 1430
Zsp2I ATGCAT 1 cut(s) 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.