FvH4_2g02430

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000727
Physical Location & Seq
Reverse (-)
1959756 .. 1961348
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02430.t1

Sequence Viewer

Length: 885 bp
ATGGTGAGCCACAGTGGAGGTGGTGCTGGTGGTGCGGACCGCCTGGTGTTCATTCTCCCAATCATTATCATCTTTGGTTGCATTTCATGGGTTGTTTTCACTTCCGACTTGGCTTCTACTCCCAAGTCTTCAAAGACTGGATCCAGTTTCGTTGTTGGTGTTCAAGCGTACGGTACTACCATGGCAAAAAATCAGTCTCAGATTATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGTCTACGACGAGCTCGTGTTGCAATTAAGTTGGGAAACCGATCACAAGATTCTGACTACATCCCCCAAGGACCAATTTATTGGAATGCTAATGCATTTCACAGGAGCTATATTGAAATGGAGAAACAGTTTAAGGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGCCCTTGCAAAAGCATATATTCAATGGAGGGGAAGTTTATACATGAACTGGAGGTGAATAAGCAATTTCGGACGCTAGAACCTGATAAGGCACATGTTTATTTTCTTCCCTTCAGTGTGACAATGTTGGTTCAGTATGTTTATGTTCCCAACTCACATGATTTCGGACCAATCAAGCAAACAGTGCGAGACTATGTGAGTGTTATCTCCACCAAGTATCCGTTCTGGAATAGAAGCCTAGCAGCAGATCACTTTATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGTTTACCTTCGTAGAAACTTGATTCGGGTGCTATGCAATGCGAACACATCTGGAGGCTTCAATCCTTCTAGAGATGTGTCTTTTCCGGAGATCAACCTTCCAAATGGAAAAACACATGGTTTAATCGGTGGACTTGAGGTGGATTTGAGGTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

295

Amino Acids

33.12

Weight (kDa)

9.18

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 124 - 277 2.6e-19 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 811
AciI CCGC 2 cut(s) 35, 40
AclWI GGATC 2 cut(s) 135, 148
AcuI CTGAAG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 2 cut(s) 170, 175
AfiI CCNNNNNNNGG 1 cut(s) 700
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 6 cut(s) 132, 164, 365, 450, 717, 787
AjnI CCWGG 1 cut(s) 42
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 2 cut(s) 263, 357
AluI AGCT 2 cut(s) 263, 357
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 201, 609
AlwI GGATC 2 cut(s) 135, 148
Aor13HI TCCGGA 1 cut(s) 811
AoxI GGCC 2 cut(s) 427, 704
ApeKI GCWGC 1 cut(s) 668
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AseI ATTAAT 1 cut(s) 207
AspS9I GGNCC 5 cut(s) 37, 320, 428, 593, 704
AsuHPI GGTGA 2 cut(s) 16, 493
AvaII GGWCC 3 cut(s) 37, 320, 593
BamHI GGATCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 265
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 680
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 654
BcoDI GTCTC 2 cut(s) 201, 609
BfaI CTAG 4 cut(s) 233, 503, 665, 795
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 1 cut(s) 669
BlsI GCNGC 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 3 cut(s) 37, 320, 593
BmgT120I GGNCC 5 cut(s) 37, 320, 428, 593, 704
BmiI GGNNCC 2 cut(s) 142, 705
BmrFI CCNGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 3 cut(s) 263, 497, 798
BpuEI CTTGAG 1 cut(s) 881
BsaHI GRCGYC 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 180, 316
BsaWI WCCGGW 1 cut(s) 811
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 700
Bse1I ACTGG 3 cut(s) 142, 144, 480
Bse3DI GCAATG 1 cut(s) 769
BseAI TCCGGA 1 cut(s) 811
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 180, 316
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 700
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 3 cut(s) 142, 144, 480
BseXI GCAGC 1 cut(s) 680
BshFI GGCC 2 cut(s) 429, 706
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 812
BsiWI CGTACG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 700
BsmAI GTCTC 2 cut(s) 201, 609
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 2 cut(s) 429, 706
Bsp1286I GDGCHC 1 cut(s) 265
Bsp13I TCCGGA 1 cut(s) 811
Bsp143I GATC 4 cut(s) 140, 290, 673, 816
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 35, 40
BspANI GGCC 2 cut(s) 429, 706
BspCNI CTCAG 1 cut(s) 211
BspEI TCCGGA 1 cut(s) 811
BspLI GGNNCC 2 cut(s) 142, 705
BspPI GGATC 2 cut(s) 135, 148
BsrDI GCAATG 1 cut(s) 769
BsrI ACTGG 3 cut(s) 142, 144, 480
BssECI CCNNGG 2 cut(s) 180, 316
BssMI GATC 4 cut(s) 140, 290, 673, 816
BssNI GRCGYC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 180, 316
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 4 cut(s) 14, 173, 378, 610
BstACI GRCGYC 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 4 cut(s) 143, 293, 676, 819
BstMAI GTCTC 2 cut(s) 201, 609
BstMBI GATC 4 cut(s) 140, 290, 673, 816
BstMWI GCNNNNNNNGC 4 cut(s) 32, 247, 269, 610
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 330
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 2 cut(s) 429, 706
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 19, 547, 615
Cac8I GCNNGC 1 cut(s) 691
Cfr13I GGNCC 5 cut(s) 37, 320, 428, 593, 704
CpoI CGGWCCG 1 cut(s) 37
CseI GACGC 2 cut(s) 239, 508
Csp6I GTAC 2 cut(s) 169, 174
CspI CGGWCCG 1 cut(s) 37
CviAII CATG 7 cut(s) 87, 181, 470, 521, 584, 695, 842
CviJI RGCY 9 cut(s) 9, 113, 241, 263, 357, 429, 663, 706, 783
CviKI_1 RGCY 9 cut(s) 9, 113, 241, 263, 357, 429, 663, 706, 783
CviQI GTAC 2 cut(s) 169, 174
DdeI CTNAG 1 cut(s) 198
DpnI GATC 4 cut(s) 142, 292, 675, 818
DpnII GATC 4 cut(s) 140, 290, 673, 816
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 180, 316
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 3 cut(s) 37, 320, 593
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 180, 316
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 180, 316
FaeI CATG 7 cut(s) 90, 184, 473, 524, 587, 698, 845
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 1 cut(s) 226
FatI CATG 7 cut(s) 86, 180, 469, 520, 583, 694, 841
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 669
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 669
FspBI CTAG 4 cut(s) 233, 503, 665, 795
GluI GCNGC 1 cut(s) 669
GsuI CTGGAG 3 cut(s) 263, 497, 798
HaeIII GGCC 2 cut(s) 429, 706
HapII CCGG 1 cut(s) 812
HgaI GACGC 2 cut(s) 239, 508
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 7 cut(s) 90, 184, 473, 524, 587, 698, 845
HinfI GANTC 2 cut(s) 299, 748
HpaII CCGG 1 cut(s) 812
HphI GGTGA 2 cut(s) 16, 493
Hpy166II GTNNAC 3 cut(s) 254, 730, 857
Hpy188I TCNGA 5 cut(s) 106, 201, 304, 498, 593
Hpy188III TCNNGA 5 cut(s) 233, 652, 777, 795, 812
Hpy8I GTNNAC 3 cut(s) 254, 730, 857
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 5 cut(s) 395, 547, 743, 801, 833
HpyCH4III ACNGT 4 cut(s) 14, 173, 378, 610
HpyCH4V TGCA 5 cut(s) 81, 272, 344, 435, 762
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 247, 269, 610
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 7 cut(s) 90, 184, 473, 524, 587, 698, 845
Kpn2I TCCGGA 1 cut(s) 811
Kzo9I GATC 4 cut(s) 140, 290, 673, 816
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 1 cut(s) 680
MaeI CTAG 4 cut(s) 233, 503, 665, 795
MaeIII GTNAC 1 cut(s) 544
MalI GATC 4 cut(s) 142, 292, 675, 818
MboI GATC 4 cut(s) 140, 290, 673, 816
MboII GAAGA 2 cut(s) 120, 524
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 3 cut(s) 273, 324, 491
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 8 cut(s) 11, 231, 238, 448, 472, 773, 856, 867
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 811
MseI TTAA 4 cut(s) 207, 276, 381, 848
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 32, 247, 269, 610
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 140, 290, 673, 816
NlaIII CATG 7 cut(s) 90, 184, 473, 524, 587, 698, 845
NlaIV GGNNCC 2 cut(s) 142, 705
NmuCI GTSAC 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 524
PciI ACATGT 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 299, 748
Pfl23II CGTACG 1 cut(s) 168
PkrI GCNGC 1 cut(s) 670
PscI ACATGT 1 cut(s) 520
PshBI ATTAAT 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 142, 705
PspPI GGNCC 5 cut(s) 37, 320, 428, 593, 704
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 2 cut(s) 170, 175
RsaNI GTAC 2 cut(s) 169, 174
Rsr2I CGGWCCG 1 cut(s) 37
RsrII CGGWCCG 1 cut(s) 37
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 4 cut(s) 207, 276, 381, 848
SatI GCNGC 1 cut(s) 669
Sau3AI GATC 4 cut(s) 140, 290, 673, 816
Sau96I GGNCC 5 cut(s) 37, 320, 428, 593, 704
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 265
SinI GGWCC 3 cut(s) 37, 320, 593
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 3 cut(s) 273, 324, 491
SsiI CCGC 2 cut(s) 35, 40
SspMI CTAG 4 cut(s) 233, 503, 665, 795
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 2 cut(s) 180, 316
TaaI ACNGT 4 cut(s) 14, 173, 378, 610
TasI AATT 3 cut(s) 273, 324, 491
TfiI GAWTC 2 cut(s) 299, 748
Tru1I TTAA 4 cut(s) 207, 276, 381, 848
Tru9I TTAA 4 cut(s) 207, 276, 381, 848
TscAI CASTG 3 cut(s) 19, 547, 615
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 4 cut(s) 40, 75, 410, 486
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 3 cut(s) 19, 547, 615
VpaK11BI GGWCC 3 cut(s) 37, 320, 593
VspI ATTAAT 1 cut(s) 207
XbaI TCTAGA 2 cut(s) 232, 794
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 4 cut(s) 233, 503, 665, 795
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.