Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000727

Physical Location & Seq

Genomic Coordinates Forward (+)

8527000 .. 8527709

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGGCCCAGTCGTAACAAACCAGTTTCATCTTTATCCTCGGTTTTAGTGGGATTAATACTCGTATTAACTTTGGCAGTATCTTTGTTGGTAATCTCAAGGGCTTCCTCCTCCTCCTCCTCATCTTCTTCTTCTTCAGAGACAACATGGAAAGTAGCTGCAGCTTCAGCTGGTGGTAGTAGTAGTGATATTAATACTACTACTACTACTACTTACTCTCTTGCTGCTTTAACATCCACTCAACCACCACCACAACCTCTACTTTTTAGTTTCTCTTCACTAAATAACCTAAATACAGCTGCCCCATCTCCAGCTCCTGCTCCTGCCCCTCAAATATCAGCAGCTGATGTGTTGCAAGAGACGATAATCCAGAAAGAAGAAGGAGACGTGATTAATACAGTGGATAATAATGTTGTTGCCAATAGAACAGTGTTCATCAGCGGCAGCCAGCTTGATAAAGTAGAAGCAAGTTTGGGTAGAGCAAGGTCTGCCATTAGAGAAGCTGCTAAAGTTAGGAATAAAACATCCACACATCAAGACCCTGATTATGTTCCTCGAGGCCCCATATATCACAACCCTAACGCCTTCCACAGGTACGTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

202

Amino Acids

21.12

Weight (kDa)

9.39

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03795
fragaria_vesca	FvH4_1g25430 FvH4_2g00470 FvH4_2g02351 FvH4_2g02352 FvH4_2g02430 FvH4_6g17390 FvH4_6g17390 FvH4_6g17390
malus_domestica	MD05G1001700.v1.1 MD10G1002900.v1.1 MD12G1101000.v1.1 MD14G1095400.v1.1 MD15G1138300.v1.1 MD15G1138400.v1.1
prunus_persica	Prupe.4G281300_v2.0.a1 Prupe.7G121600_v2.0.a1 Prupe.8G004600_v2.0.a1
pyrus_communis	pycom05g00190 pycom10g00230 pycom12g09940 pycom14g09360 pycom15g12460 pycom15g12470 pycom15g12480 pycom15g12490 pycom15g12510 pycom15g12520
rosa_chinensis	RchiOBHm_Chr2g0123451 RchiOBHm_Chr3g0471641 RchiOBHm_Chr6g0246291 RchiOBHm_Chr6g0250461
rosa_laevigata	RLG00000015265 RLG00000015539 RLG00000018756 RLG00000024149 RLG00000026019
rosa_multiflora	Rmu_sc0000411.1_g000001 Rmu_sc0001066.1_g000013 Rmu_sc0005631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00120630 Rroxscaffold_2G00120640 Rroxscaffold_6G00409720 Rroxscaffold_7G00214700 Rroxscaffold_7G00217220
rosa_rugosa	Rorug02G0245900 Rorug03G0118500 Rorug03G0118600 Rorug05G0496700 Rorug05G0520100
rosa_samantha	Rh2AG304500 Rh2BG312600 Rh2CG291000 Rh2DG328500 Rh3AG169700 Rh3BG195400 Rh3CG186100 Rh3CG195600 Rh3DG179600 Rh6AG005900 Rh6AG034300 Rh6BG004700 Rh6CG004100 Rh6CG029800 Rh6DG003900
rosa_wichuraiana	Rw0G008950 Rw0G015450 Rw2G024400 Rw6G000650 Rw6G000720 Rw6G002770 Rw6G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	555
AciI	CCGC	1 cut(s)	441
AcuI	CTGAAG	2 cut(s)	120, 150
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	1 cut(s)	591
AjiI	CACGTC	1 cut(s)	388
AluBI	AGCT	8 cut(s)	158, 164, 170, 299, 314, 344, 451, 503
AluI	AGCT	8 cut(s)	158, 164, 170, 299, 314, 344, 451, 503
Alw26I	GTCTC	3 cut(s)	134, 353, 378
AlwNI	CAGNNNCTG	2 cut(s)	317, 344
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	2 cut(s)	5, 559
ApeKI	GCWGC	7 cut(s)	158, 161, 224, 299, 341, 444, 503
AseI	ATTAAT	3 cut(s)	56, 192, 393
AspS9I	GGNCC	2 cut(s)	6, 560
AvaI	CYCGRG	1 cut(s)	555
BbvI	GCAGC	7 cut(s)	145, 173, 211, 286, 353, 456, 490
BccI	CCATC	1 cut(s)	313
BcoDI	GTCTC	3 cut(s)	134, 353, 378
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	8 cut(s)	159, 162, 225, 300, 342, 442, 445, 504
BlsI	GCNGC	8 cut(s)	160, 163, 226, 301, 343, 443, 446, 505
BmeT110I	CYCGRG	1 cut(s)	555
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	6, 560
BmiI	GGNNCC	1 cut(s)	562
BmrI	ACTGGG	1 cut(s)	3
BmuI	ACTGGG	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse1I	ACTGG	2 cut(s)	9, 23
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	233, 524
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	9, 23
BseRI	GAGGAG	4 cut(s)	100, 103, 106, 109
BseXI	GCAGC	7 cut(s)	145, 173, 211, 286, 353, 456, 490
BshFI	GGCC	2 cut(s)	7, 561
BsiHKCI	CYCGRG	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	3 cut(s)	134, 353, 378
BsmBI	CGTCTC	2 cut(s)	353, 378
BsnI	GGCC	2 cut(s)	7, 561
BsoBI	CYCGRG	1 cut(s)	555
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	2 cut(s)	7, 561
BspLI	GGNNCC	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	9, 23
BssECI	CCNNGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	400, 430
Bst6I	CTCTTC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	449
BstENI	CCTNNNNNAGG	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	233, 524
BstMAI	GTCTC	3 cut(s)	134, 353, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 488
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	7 cut(s)	145, 173, 211, 286, 353, 456, 490
BsuRI	GGCC	2 cut(s)	7, 561
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	233, 524
BtsIMutI	CAGTG	2 cut(s)	405, 435
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	2 cut(s)	317, 344
Cfr13I	GGNCC	2 cut(s)	6, 560
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	1 cut(s)	147
CviQI	GTAC	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	120, 150
Eco88I	CYCGRG	1 cut(s)	555
EcoNI	CCTNNNNNAGG	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	560
Esp3I	CGTCTC	2 cut(s)	353, 378
FaeI	CATG	1 cut(s)	150
FaiI	YATR	6 cut(s)	148, 549, 566, 568, 602, 604
FatI	CATG	1 cut(s)	146
Fnu4HI	GCNGC	8 cut(s)	159, 162, 225, 300, 342, 442, 445, 504
FokI	GGATG	2 cut(s)	220, 511
Fsp4HI	GCNGC	8 cut(s)	159, 162, 225, 300, 342, 442, 445, 504
GluI	GCNGC	8 cut(s)	159, 162, 225, 300, 342, 442, 445, 504
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	7, 561
Hin1II	CATG	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	370, 536
HpyAV	CCTTC	2 cut(s)	374, 595
HpyCH4III	ACNGT	2 cut(s)	400, 430
HpyCH4IV	ACGT	2 cut(s)	387, 597
HpyCH4V	TGCA	2 cut(s)	161, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 488
HpySE526I	ACGT	2 cut(s)	387, 597
Hsp92II	CATG	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	319, 325
Lsp1109I	GCAGC	7 cut(s)	145, 173, 211, 286, 353, 456, 490
MaeII	ACGT	2 cut(s)	387, 597
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	6 cut(s)	117, 120, 123, 126, 267, 389
MseI	TTAA	5 cut(s)	56, 68, 192, 230, 393
MspA1I	CMGCKG	4 cut(s)	170, 299, 344, 441
MwoI	GCNNNNNNNGC	2 cut(s)	167, 488
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	555
PkrI	GCNGC	8 cut(s)	160, 163, 226, 301, 343, 443, 446, 505
PshBI	ATTAAT	3 cut(s)	56, 192, 393
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	2 cut(s)	6, 560
PspXI	VCTCGAGB	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	2 cut(s)	317, 344
PvuII	CAGCTG	3 cut(s)	170, 299, 344
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SaqAI	TTAA	5 cut(s)	56, 68, 192, 230, 393
SatI	GCNGC	8 cut(s)	159, 162, 225, 300, 342, 442, 445, 504
Sau96I	GGNCC	2 cut(s)	6, 560
SfcI	CTRYAG	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	555
SlaI	CTCGAG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	97, 555
SmoI	CTYRAG	2 cut(s)	97, 555
SsiI	CCGC	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	400, 430
TaiI	ACGT	2 cut(s)	390, 600
TaqI	TCGA	1 cut(s)	556
TauI	GCSGC	1 cut(s)	444
Tru1I	TTAA	5 cut(s)	56, 68, 192, 230, 393
Tru9I	TTAA	5 cut(s)	56, 68, 192, 230, 393
TscAI	CASTG	2 cut(s)	405, 435
TseI	GCWGC	7 cut(s)	158, 161, 224, 299, 341, 444, 503
TspDTI	ATGAA	2 cut(s)	18, 424
TspRI	CASTG	2 cut(s)	405, 435
VspI	ATTAAT	3 cut(s)	56, 192, 393
XagI	CCTNNNNNAGG	1 cut(s)	589
XhoI	CTCGAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.