Rw6G002930

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000727
Physical Location & Seq
Reverse (-)
4771488 .. 4772474
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002930.1

Sequence Viewer

Length: 696 bp
ATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCTTTTCCGGAGATCAACCTTCCAAATGGAAACACACATGGTTTAATTGGTGGACCTTCTCCAAGGGTACGAACTGTGCTAGCTTTTTTTGCAGGAGGACTTCATGGCCCTATTAGGCCTCTTTTGCTGGAGTTGTGGGAGAACAAAGATCAGGACATGATGGTGCACCAGTACCTTCCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCGGTGCTCATCTCAGATCATTATGTGGTCCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGATTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAATGTCAGAGTTCATGATGGCCTGCAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

231

Amino Acids

26.38

Weight (kDa)

9.26

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 1 - 178 9.3e-40 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 130
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 192, 296
AfiI CCNNNNNNNGG 2 cut(s) 19, 304
AgsI TTSAA 7 cut(s) 36, 106, 368, 485, 514, 575, 598
AhdI GACNNNNNGTC 1 cut(s) 665
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw21I GWGCWC 2 cut(s) 291, 423
Alw44I GTGCAC 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 4 cut(s) 23, 229, 239, 682
ApaLI GTGCAC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 508
Asp700I GAANNNNTTC 1 cut(s) 473
AspS9I GGNCC 4 cut(s) 23, 176, 230, 442
AsuHPI GGTGA 1 cut(s) 464
AsuNHI GCTAGC 1 cut(s) 202
AvaII GGWCC 2 cut(s) 176, 442
BaeGI GKGCMC 1 cut(s) 291
BbsI GAAGAC 2 cut(s) 616, 664
Bbv12I GWGCWC 2 cut(s) 291, 423
BccI CCATC 2 cut(s) 277, 674
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciVI GTATCC 1 cut(s) 513
BfaI CTAG 2 cut(s) 203, 375
BfuI GTATCC 1 cut(s) 513
Bme18I GGWCC 2 cut(s) 176, 442
BmeRI GACNNNNNGTC 1 cut(s) 665
BmgT120I GGNCC 4 cut(s) 23, 176, 230, 442
BmiI GGNNCC 2 cut(s) 24, 444
BmsI GCATC 1 cut(s) 445
BmtI GCTAGC 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 616, 664
BplI GAGNNNNNCTC 2 cut(s) 584, 616
BpmI CTGGAG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 185, 380
BsaWI WCCGGW 2 cut(s) 130, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 304
Bse1I ACTGG 3 cut(s) 292, 409, 470
Bse3DI GCAATG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 185, 380
BseLI CCNNNNNNNGG 2 cut(s) 19, 304
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 441, 667
BseNI ACTGG 3 cut(s) 292, 409, 470
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 291
BshFI GGCC 4 cut(s) 25, 231, 241, 684
BsiHKAI GWGCWC 2 cut(s) 291, 423
BsiSI CCGG 2 cut(s) 131, 416
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 19, 304
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 4 cut(s) 25, 231, 241, 684
Bsp1286I GDGCHC 2 cut(s) 291, 423
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 3 cut(s) 135, 271, 430
BspANI GGCC 4 cut(s) 25, 231, 241, 684
BspCNI CTCAG 2 cut(s) 440, 666
BspEI TCCGGA 1 cut(s) 130
BspHI TCATGA 2 cut(s) 525, 676
BspLI GGNNCC 2 cut(s) 24, 444
BspOI GCTAGC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 3 cut(s) 292, 409, 470
BssECI CCNNGG 2 cut(s) 185, 380
BssMI GATC 3 cut(s) 135, 271, 430
BssT1I CCWWGG 2 cut(s) 185, 380
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 10, 204, 686
BstDEI CTNAG 3 cut(s) 427, 551, 653
BstENI CCTNNNNNAGG 1 cut(s) 302
BstKTI GATC 3 cut(s) 138, 274, 433
BstMBI GATC 3 cut(s) 135, 271, 430
BstMWI GCNNNNNNNGC 2 cut(s) 212, 247
BstSLI GKGCMC 1 cut(s) 291
BstV2I GAAGAC 2 cut(s) 616, 664
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 4 cut(s) 25, 231, 241, 684
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 3 cut(s) 10, 204, 686
CciI TCATGA 2 cut(s) 525, 676
Cfr13I GGNCC 4 cut(s) 23, 176, 230, 442
Csp6I GTAC 2 cut(s) 191, 295
CviAII CATG 7 cut(s) 14, 161, 227, 280, 526, 631, 677
CviJI RGCY 9 cut(s) 25, 102, 206, 231, 241, 408, 543, 652, 684
CviKI_1 RGCY 9 cut(s) 25, 102, 206, 231, 241, 408, 543, 652, 684
CviQI GTAC 2 cut(s) 191, 295
DdeI CTNAG 3 cut(s) 427, 551, 653
DpnI GATC 3 cut(s) 137, 273, 432
DpnII GATC 3 cut(s) 135, 271, 430
DriI GACNNNNNGTC 1 cut(s) 665
Eam1105I GACNNNNNGTC 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 185, 380
Eco147I AGGCCT 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 176, 442
Eco57I CTGAAG 1 cut(s) 117
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 185, 380
ErhI CCWWGG 2 cut(s) 185, 380
FaeI CATG 7 cut(s) 17, 164, 230, 283, 529, 634, 680
FaqI GGGAC 1 cut(s) 428
FatI CATG 7 cut(s) 13, 160, 226, 279, 525, 630, 676
FspBI CTAG 2 cut(s) 203, 375
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 4 cut(s) 25, 231, 241, 684
HapII CCGG 2 cut(s) 131, 416
Hin1II CATG 7 cut(s) 17, 164, 230, 283, 529, 634, 680
HinfI GANTC 2 cut(s) 571, 660
HpaII CCGG 2 cut(s) 131, 416
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 2 cut(s) 176, 289
Hpy188I TCNGA 5 cut(s) 97, 430, 462, 656, 671
Hpy188III TCNNGA 4 cut(s) 131, 275, 526, 677
Hpy8I GTNNAC 2 cut(s) 176, 289
HpyAV CCTTC 6 cut(s) 92, 120, 152, 189, 308, 558
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 5 cut(s) 81, 215, 289, 559, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 247
HpyF3I CTNAG 3 cut(s) 427, 551, 653
Hsp92II CATG 7 cut(s) 17, 164, 230, 283, 529, 634, 680
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 135, 271, 430
LpnPI CCDG 9 cut(s) 39, 144, 201, 236, 260, 305, 390, 429, 451
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 203, 375
MalI GATC 3 cut(s) 137, 273, 432
MboI GATC 3 cut(s) 135, 271, 430
MboII GAAGA 2 cut(s) 616, 669
MhlI GDGCHC 2 cut(s) 291, 423
MluCI AATT 2 cut(s) 168, 508
MlyI GAGTC 1 cut(s) 654
MnlI CCTC 5 cut(s) 212, 252, 385, 573, 615
MroI TCCGGA 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 3 cut(s) 167, 495, 694
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 2 cut(s) 131, 416
Mva1269I GAATGC 1 cut(s) 561
MwoI GCNNNNNNNGC 2 cut(s) 212, 247
NdeII GATC 3 cut(s) 135, 271, 430
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 7 cut(s) 17, 164, 230, 283, 529, 634, 680
NlaIV GGNNCC 2 cut(s) 24, 444
PagI TCATGA 2 cut(s) 525, 676
PceI AGGCCT 1 cut(s) 241
PctI GAATGC 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 571
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 24, 444
PspPI GGNCC 4 cut(s) 23, 176, 230, 442
RsaI GTAC 2 cut(s) 192, 296
RsaNI GTAC 2 cut(s) 191, 295
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 3 cut(s) 167, 495, 694
Sau3AI GATC 3 cut(s) 135, 271, 430
Sau96I GGNCC 4 cut(s) 23, 176, 230, 442
SchI GAGTC 1 cut(s) 654
SduI GDGCHC 2 cut(s) 291, 423
SetI ASST 5 cut(s) 144, 181, 208, 300, 569
SfaNI GCATC 1 cut(s) 445
SinI GGWCC 2 cut(s) 176, 442
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 2 cut(s) 168, 508
SseBI AGGCCT 1 cut(s) 241
SspMI CTAG 2 cut(s) 203, 375
StuI AGGCCT 1 cut(s) 241
StyI CCWWGG 2 cut(s) 185, 380
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 65
TasI AATT 2 cut(s) 168, 508
TfiI GAWTC 1 cut(s) 571
Tru1I TTAA 3 cut(s) 167, 495, 694
Tru9I TTAA 3 cut(s) 167, 495, 694
TscAI CASTG 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 215, 665
TspRI CASTG 1 cut(s) 409
VneI GTGCAC 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 176, 442
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 2 cut(s) 203, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.