pycom10g00230

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000727
Physical Location & Seq
Reverse (-)
348672 .. 349932
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g00230.2

Sequence Viewer

Length: 828 bp
ATGCTGGTGCAGTACCTGTACGTGGCCGACTCCCACGACACTCAGCCCATCGGGCGAGCTGTCGTCGACTATGTCAATGTCATTTCGGATAAGCATCCCTTTTGGAATCGAAGTCTTGGTGCTGATCACTTTATGCTTTCTTGTCATGATTGGGGGCCGAGCACATCTGCATATGTTCCTCATTTATACCAAAACTCCATAAGAGTGCTATGCAACGCAAACACATCCGAAGGATTCAACCCTTCAAAAGATGTCTCATTTCCAGAAATCCATCTCCGAACCGGGGAAACCAAAGGACTTCTCGGTGGTCTCTCCCCATCCCGAAGGTCGATTCTTGCCTTCTTCGCAGGCCGGCTTCATGGCCACATAAGGTACCTGCTTCTAAACGAATGGAAAGAAAAAGATCAAGACGTGCAAGTTTACGACCAACTCCCCAACGGTGTATCCTATGAATCAATGTTGAAGAAGAGCAGGTTCTGCTTGTGCCCTAGCGGTTACGAAGTGGCAAGTCCGAGAGTGGTGGAAGCCATATACGCAGAGTGTGTTCCGGTGTTGATTTCGGACAGCTATGTTCCACCGTTCAGCGATGTTCTGGAGTGGAAGTCGTTTTCTGTGCAAGTGCAAGTGAAGGACATACCAAACATCAAAAGGATACTGATGGGAATATCACAAAGTCGGTACTTGAGAATGCAGAGGAGAGTGAAGCAGGTGCAGAGGCATTTTGTGGTGAATGGACCTTCCAAGAGATTCGATGTTTTCCATATGATTGTTCACTCCATTTGGCTCAGGAGGTTGAATATCCGCATTGAGGATGAACGAGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

276

Amino Acids

31.72

Weight (kDa)

8.9

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 697
Acc36I ACCTGC 3 cut(s) 384, 462, 697
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 492, 802
AcoI YGGCCR 2 cut(s) 24, 361
AfaI GTAC 4 cut(s) 14, 20, 374, 680
AfiI CCNNNNNNNGG 3 cut(s) 22, 283, 808
AgsI TTSAA 4 cut(s) 238, 246, 463, 796
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 2 cut(s) 59, 567
AluI AGCT 2 cut(s) 59, 567
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 2 cut(s) 259, 314
AlwNI CAGNNNCTG 2 cut(s) 16, 477
AoxI GGCC 4 cut(s) 24, 155, 349, 361
Asp718I GGTACC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 155, 734
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 739
AvaII GGWCC 1 cut(s) 734
BaeGI GKGCMC 1 cut(s) 488
BalI TGGCCA 1 cut(s) 363
BanI GGYRCC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 4 cut(s) 56, 279, 325, 652
BciVI GTATCC 2 cut(s) 454, 645
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 259, 314
BfaI CTAG 1 cut(s) 489
BfuAI ACCTGC 3 cut(s) 384, 462, 697
BfuI GTATCC 2 cut(s) 454, 645
BglI GCCNNNNNGGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 734
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 155, 734
BmiI GGNNCC 2 cut(s) 156, 374
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 614
Bpu10I CCTNAGC 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 703
BpuMI CCSGG 1 cut(s) 283
BsaAI YACGTR 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 283, 808
Bse118I RCCGGY 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 4 cut(s) 94, 224, 317, 817
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 3 cut(s) 22, 283, 808
BseMII CTCAG 2 cut(s) 56, 799
BseRI GAGGAG 1 cut(s) 709
BseSI GKGCMC 1 cut(s) 488
BsgI GTGCAG 2 cut(s) 29, 731
BshFI GGCC 4 cut(s) 26, 157, 351, 363
BshNI GGYRCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 3 cut(s) 282, 352, 548
BslI CCNNNNNNNGG 3 cut(s) 22, 283, 808
BsmAI GTCTC 2 cut(s) 259, 314
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 4 cut(s) 26, 157, 351, 363
Bso31I GGTCTC 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 164, 488
Bsp143I GATC 2 cut(s) 124, 403
BspACI CCGC 2 cut(s) 492, 802
BspANI GGCC 4 cut(s) 26, 157, 351, 363
BspCNI CTCAG 2 cut(s) 55, 798
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 156, 374
BspMI ACCTGC 3 cut(s) 384, 462, 697
BspQI GCTCTTC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 124, 403
Bst4CI ACNGT 2 cut(s) 440, 579
Bst6I CTCTTC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 57, 349, 353
BstDEI CTNAG 2 cut(s) 42, 785
BstF5I GGATG 4 cut(s) 94, 224, 317, 817
BstKTI GATC 2 cut(s) 127, 406
BstMAI GTCTC 2 cut(s) 259, 314
BstMBI GATC 2 cut(s) 124, 403
BstMWI GCNNNNNNNGC 4 cut(s) 52, 344, 477, 533
BstSCI CCNGG 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 488
BsuI GTATCC 2 cut(s) 454, 645
BsuRI GGCC 4 cut(s) 26, 157, 351, 363
BtgZI GCGATG 1 cut(s) 600
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 4 cut(s) 94, 224, 317, 817
BveI ACCTGC 3 cut(s) 384, 462, 697
Cac8I GCNNGC 3 cut(s) 57, 349, 353
CaiI CAGNNNCTG 2 cut(s) 16, 477
CciI TCATGA 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 155, 734
Csp6I GTAC 4 cut(s) 13, 19, 373, 679
CviAII CATG 2 cut(s) 146, 359
CviQI GTAC 4 cut(s) 13, 19, 373, 679
DdeI CTNAG 2 cut(s) 42, 785
DpnI GATC 2 cut(s) 126, 405
DpnII GATC 2 cut(s) 124, 403
EaeI YGGCCR 2 cut(s) 24, 361
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 734
FaeI CATG 2 cut(s) 149, 362
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 2 cut(s) 145, 358
FauNDI CATATG 2 cut(s) 172, 762
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 66
FokI GGATG 4 cut(s) 81, 211, 304, 824
FspBI CTAG 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 4 cut(s) 26, 157, 351, 363
HapII CCGG 3 cut(s) 282, 352, 548
Hin1II CATG 2 cut(s) 149, 362
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 6 cut(s) 29, 106, 234, 331, 452, 747
HpaII CCGG 3 cut(s) 282, 352, 548
HphI GGTGA 1 cut(s) 739
Hpy166II GTNNAC 3 cut(s) 67, 421, 772
Hpy188I TCNGA 5 cut(s) 88, 229, 278, 513, 562
Hpy188III TCNNGA 6 cut(s) 146, 263, 321, 407, 593, 787
Hpy8I GTNNAC 3 cut(s) 67, 421, 772
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 6 cut(s) 224, 252, 318, 349, 622, 747
HpyCH4III ACNGT 2 cut(s) 440, 579
HpyCH4IV ACGT 2 cut(s) 21, 411
HpyCH4V TGCA 8 cut(s) 10, 170, 213, 415, 616, 622, 691, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 344, 477, 533
HpyF3I CTNAG 2 cut(s) 42, 785
HpySE526I ACGT 2 cut(s) 21, 411
Hsp92II CATG 2 cut(s) 149, 362
KpnI GGTACC 1 cut(s) 376
KroI GCCGGC 1 cut(s) 351
KroNI GCCGGC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 124, 403
LguI GCTCTTC 1 cut(s) 461
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 489
MaeII ACGT 2 cut(s) 21, 411
MaeIII GTNAC 1 cut(s) 494
MalI GATC 2 cut(s) 126, 405
MboI GATC 2 cut(s) 124, 403
MboII GAAGA 3 cut(s) 334, 475, 478
MhlI GDGCHC 2 cut(s) 164, 488
MlsI TGGCCA 1 cut(s) 363
MluNI TGGCCA 1 cut(s) 363
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 5 cut(s) 189, 687, 708, 783, 802
Mox20I TGGCCA 1 cut(s) 363
MroNI GCCGGC 1 cut(s) 351
MscI TGGCCA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 363
MspI CCGG 3 cut(s) 282, 352, 548
MspR9I CCNGG 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 693
MwoI GCNNNNNNNGC 4 cut(s) 52, 344, 477, 533
NaeI GCCGGC 1 cut(s) 353
NciI CCSGG 1 cut(s) 283
NdeI CATATG 2 cut(s) 172, 762
NdeII GATC 2 cut(s) 124, 403
NgoMIV GCCGGC 1 cut(s) 351
NlaIII CATG 2 cut(s) 149, 362
NlaIV GGNNCC 2 cut(s) 156, 374
NmeAIII GCCGAG 1 cut(s) 183
PagI TCATGA 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 461
PctI GAATGC 1 cut(s) 693
PdiI GCCGGC 1 cut(s) 353
PfeI GAWTC 5 cut(s) 106, 234, 331, 452, 747
PflFI GACNNNGTC 1 cut(s) 71
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 156, 374
PspPI GGNCC 2 cut(s) 155, 734
PstNI CAGNNNCTG 2 cut(s) 16, 477
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 4 cut(s) 14, 20, 374, 680
RsaNI GTAC 4 cut(s) 13, 19, 373, 679
RseI CAYNNNNRTG 1 cut(s) 203
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 461
Sau3AI GATC 2 cut(s) 124, 403
Sau96I GGNCC 2 cut(s) 155, 734
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 2 cut(s) 164, 488
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
SsiI CCGC 2 cut(s) 492, 802
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 440, 579
TaiI ACGT 2 cut(s) 24, 414
TaqI TCGA 4 cut(s) 66, 109, 329, 750
TfiI GAWTC 5 cut(s) 106, 234, 331, 452, 747
TspDTI ATGAA 3 cut(s) 347, 465, 828
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.