Rh2AG304500

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000727
Physical Location & Seq
Reverse (-)
38328818 .. 38331868
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG304500.1

Sequence Viewer

Length: 1641 bp
ATGATAATATGGGTTTGCTGCCTCATTCGATCACCAAATCAAAAGCTAGTACGTTTCATTTTGATAGTGGAGATGAGAGATAGAGATATGAGGGCTGCTCGTACTTACAGACCAGTTTTTTCATTATCCTGGTTTCTAGTAGTGTTACTGGTAATACCTTTGCTGGTGTTGCTGTTAATCTTTCTGATACAGCCTCTGAGTTCAAGCTCTTCATCATCAACTGCAACTTGGATAGTTGATAATTCTAGTACTTCTGGAAATTTTAGCTACTCTCTAGCTTTAACTGCAGCTCAAGAATGGCCTCAACCTCCAGCTGAAGCTCCACTTACTAGTTTTTTATATGGTAGTCCAAGTCCTGCTCCTGCCCCTCAAATATCAACTGGGGCTATACAAGTTGGTGGTTCTAGAAGAGTAAAATCATGGTGGAGCATGAAGCTAGATGAGCTAGAAGCAAGTTTGGGCAAAGCAAGGTCTTCCATAAGAGAAGCAGCTGGTACATCACTAGTACGACTTAGGAACAAGATCAATTCGACATCAAAAACAGTGCAACTAGTACATGACGACGACCCCGACTATGTTCCTCACGGCCGCATATATCGGAACGCCCACGCCTTTCATAGGAGCTACCTATTAATGGAGAAGCTGTTCAAGATATACGTATACGAAGAAGGAGAGGTCCCACTGTTTCATAGTGGTCCATGCAAGAGCATATATTCCTCAGAAGGAAGGTTCATTAATGAAATGGAGATGGGCAAATTGTACAGAACAAAAGACCCAGATGAAGCTCACGTTTACTTCATTCCAGTAAGTGTGGCCAATCTGGTTCAGTACCTGTATGTCCCCGATTCAAAAGATCTAGATCCGATGAAGCGAGCCACCGTCGACTACGTTAAAGTCATTGCTGATAGGCATCCTTTCTGGAATAGAAGCCTTGGTGCTGATCATTTCATGCTTTCATGTCATGACTGGGGGCCAATGACGTCATCCTTTGTTCCAAATTTGTTCCACAAGTCCATTAGGGTTCTTTGCAATGCCAATACTTCCGAAGGATTTAATCCATCAAAAGATGCGTCGTTTCCCGAAATTAATCTTCTAACAGGTGAACTCTCAAGTCTAGGTGGTCAGCCTCCATCGACTCGAACTGTCCTCGCCTTTTTCGCCGGTCATCTTCATGGCCACATTAGGTACCTCCTTTTAAACGAATGGAAAGGCAAAGACCAAGATGTCCAAGTCTATGATGCGCTCCCAAAGAAAGTGTCCTATGAAAAAAAGTTGAAAAGTAGCAAGTTTTGCTTGTGCCCAAGTGGGTATGAAGTGGCAAGTCCAAGAGTGGTGGAAGCAATCTATGCCGAGTGTGTTCCGGTGTTGATTTCAGATGCTTATGTCCCACCTTTCAGTGATGTTTTGAATTGGAAGTCATTTTCTGTTCAAATAGATGTGAAGAACATATCGGATATCAAGAACATATTGATGGGGATATCTCATAGGCAGTACCTAAGAATGCAAAGGAATGTGAAACAAGTGCAACGACATTTTGTGGTGAATGGACCTCCTAGGAGATATGATGTTTTCCACATGATTGTTCACTCTATTTGGCTTAGAAGGTTAAATATTCGCGTTCATGATTTTCGGAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

546

Amino Acids

62.16

Weight (kDa)

9.26

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 213 - 491 3.7e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1223
AatII GACGTC 1 cut(s) 983
Acc65I GGTACC 1 cut(s) 1185
AccB1I GGYRCC 1 cut(s) 1185
AccI GTMKAC 2 cut(s) 660, 882
AccII CGCG 1 cut(s) 1617
AciI CCGC 1 cut(s) 589
AclWI GGATC 1 cut(s) 854
AcoI YGGCCR 3 cut(s) 586, 813, 1174
AcsI RAATTY 2 cut(s) 259, 997
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 980
AfiI CCNNNNNNNGG 2 cut(s) 618, 634
AgsI TTSAA 6 cut(s) 204, 649, 849, 1276, 1408, 1430
AhlI ACTAGT 3 cut(s) 329, 502, 550
AjnI CCWGG 1 cut(s) 128
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AlwI GGATC 1 cut(s) 854
AlwNI CAGNNNCTG 2 cut(s) 196, 832
AoxI GGCC 5 cut(s) 299, 586, 813, 971, 1174
ApeKI GCWGC 4 cut(s) 18, 95, 287, 488
ApoI RAATTY 2 cut(s) 259, 997
ArsI GACNNNNNNTTYG 4 cut(s) 1055, 1087, 1241, 1273
AseI ATTAAT 3 cut(s) 632, 735, 1086
Asp700I GAANNNNTTC 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 1185
AspA2I CCTAGG 1 cut(s) 1553
AspLEI GCGC 1 cut(s) 1243
AspS9I GGNCC 4 cut(s) 676, 695, 971, 1547
AsuHPI GGTGA 3 cut(s) 24, 1112, 1552
AvaII GGWCC 3 cut(s) 676, 695, 1547
AvrII CCTAGG 1 cut(s) 1553
BaeGI GKGCMC 1 cut(s) 1301
BalI TGGCCA 2 cut(s) 815, 1176
BanI GGYRCC 1 cut(s) 1185
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 5, 82, 299, 500
BccI CCATC 4 cut(s) 742, 1066, 1138, 1465
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 130
BclI TGATCA 1 cut(s) 940
BcuI ACTAGT 3 cut(s) 329, 502, 550
BfmI CTRYAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 853
BisI GCNGC 5 cut(s) 19, 96, 288, 489, 589
BlnI CCTAGG 1 cut(s) 1553
BlsI GCNGC 5 cut(s) 20, 97, 289, 490, 590
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 3 cut(s) 676, 695, 1547
BmgT120I GGNCC 4 cut(s) 676, 695, 971, 1547
BmiI GGNNCC 3 cut(s) 678, 972, 1187
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 2 cut(s) 390, 976
BmsI GCATC 4 cut(s) 919, 1057, 1228, 1366
BmuI ACTGGG 2 cut(s) 390, 976
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 276, 1093
BsaAI YACGTR 1 cut(s) 658
BsaBI GATNNNNATC 2 cut(s) 858, 909
BsaHI GRCGYC 1 cut(s) 980
BsaJI CCNNGG 2 cut(s) 931, 1553
BsaWI WCCGGW 1 cut(s) 1360
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 2 cut(s) 618, 634
Bse118I RCCGGY 1 cut(s) 1160
Bse1I ACTGG 5 cut(s) 113, 153, 385, 803, 971
Bse3DI GCAATG 2 cut(s) 897, 1036
Bse8I GATNNNNATC 2 cut(s) 858, 909
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 931, 1553
BseGI GGATG 2 cut(s) 910, 983
BseJI GATNNNNATC 2 cut(s) 858, 909
BseLI CCNNNNNNNGG 2 cut(s) 618, 634
BseMI GCAATG 2 cut(s) 897, 1036
BseMII CTCAG 2 cut(s) 188, 732
BseNI ACTGG 5 cut(s) 113, 153, 385, 803, 971
BseSI GKGCMC 1 cut(s) 1301
BseX3I CGGCCG 1 cut(s) 586
BseXI GCAGC 4 cut(s) 5, 82, 299, 500
Bsh1236I CGCG 1 cut(s) 1617
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 5 cut(s) 301, 588, 815, 973, 1176
BshNI GGYRCC 1 cut(s) 1185
BsiEI CGRYCG 1 cut(s) 589
BsiSI CCGG 2 cut(s) 1161, 1361
BslFI GGGAC 3 cut(s) 662, 824, 1370
BslI CCNNNNNNNGG 2 cut(s) 618, 634
BsmFI GGGAC 3 cut(s) 662, 824, 1370
BsmI GAATGC 1 cut(s) 1506
BsnI GGCC 5 cut(s) 301, 588, 815, 973, 1176
Bsp1286I GDGCHC 1 cut(s) 1301
Bsp1407I TGTACA 1 cut(s) 759
Bsp143I GATC 5 cut(s) 29, 522, 853, 859, 940
BspACI CCGC 1 cut(s) 589
BspANI GGCC 5 cut(s) 301, 588, 815, 973, 1176
BspCNI CTCAG 2 cut(s) 189, 731
BspFNI CGCG 1 cut(s) 1617
BspHI TCATGA 2 cut(s) 961, 1621
BspLI GGNNCC 3 cut(s) 678, 972, 1187
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 854
BspQI GCTCTTC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 1185
BsrDI GCAATG 2 cut(s) 897, 1036
BsrFI RCCGGY 1 cut(s) 1160
BsrGI TGTACA 1 cut(s) 759
BsrI ACTGG 5 cut(s) 113, 153, 385, 803, 971
BssAI RCCGGY 1 cut(s) 1160
BssECI CCNNGG 2 cut(s) 931, 1553
BssMI GATC 5 cut(s) 29, 522, 853, 859, 940
BssNAI GTATAC 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 980
BssT1I CCWWGG 2 cut(s) 931, 1553
Bst1107I GTATAC 1 cut(s) 661
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 4 cut(s) 544, 684, 880, 1144
Bst6I CTCTTC 2 cut(s) 214, 403
BstACI GRCGYC 1 cut(s) 980
BstAPI GCANNNNNTGC 2 cut(s) 1290, 1346
BstAUI TGTACA 1 cut(s) 759
BstBAI YACGTR 1 cut(s) 658
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 5 cut(s) 197, 512, 718, 1496, 1598
BstENI CCTNNNNNAGG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 910, 983
BstFNI CGCG 1 cut(s) 1617
BstHHI GCGC 1 cut(s) 1243
BstKTI GATC 5 cut(s) 32, 525, 856, 862, 943
BstMBI GATC 5 cut(s) 29, 522, 853, 859, 940
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 6 cut(s) 169, 284, 442, 1157, 1290, 1346
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 1301
BstSNI TACGTA 1 cut(s) 658
BstUI CGCG 1 cut(s) 1617
BstV1I GCAGC 4 cut(s) 5, 82, 299, 500
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 853, 859
BstYI RGATCY 2 cut(s) 853, 859
BstZ17I GTATAC 1 cut(s) 661
BstZI CGGCCG 1 cut(s) 586
BsuRI GGCC 5 cut(s) 301, 588, 815, 973, 1176
BtsCI GGATG 2 cut(s) 910, 983
BtsIMutI CAGTG 3 cut(s) 549, 680, 1402
Cac8I GCNNGC 1 cut(s) 873
CaiI CAGNNNCTG 2 cut(s) 196, 832
CciI TCATGA 2 cut(s) 961, 1621
CfoI GCGC 1 cut(s) 1243
Cfr10I RCCGGY 1 cut(s) 1160
Cfr13I GGNCC 4 cut(s) 676, 695, 971, 1547
CseI GACGC 1 cut(s) 1059
CspCI CAANNNNNGTGG 2 cut(s) 1314, 1349
DdeI CTNAG 5 cut(s) 197, 512, 718, 1496, 1598
DpnI GATC 5 cut(s) 31, 524, 855, 861, 942
DpnII GATC 5 cut(s) 29, 522, 853, 859, 940
DraI TTTAAA 1 cut(s) 1197
DrdI GACNNNNNNGTC 1 cut(s) 1223
DseDI GACNNNNNNGTC 1 cut(s) 1223
EaeI YGGCCR 3 cut(s) 586, 813, 1174
EagI CGGCCG 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 214, 403
EarI CTCTTC 2 cut(s) 214, 403
EclXI CGGCCG 1 cut(s) 586
Eco105I TACGTA 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 931, 1553
Eco32I GATATC 2 cut(s) 1456, 1479
Eco47I GGWCC 3 cut(s) 676, 695, 1547
Eco52I CGGCCG 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 128
EcoRV GATATC 2 cut(s) 1456, 1479
EcoT14I CCWWGG 2 cut(s) 931, 1553
ErhI CCWWGG 2 cut(s) 931, 1553
FalI AAGNNNNNCTT 4 cut(s) 309, 341, 1277, 1309
FaqI GGGAC 3 cut(s) 662, 824, 1370
FbaI TGATCA 1 cut(s) 940
FblI GTMKAC 2 cut(s) 660, 882
Fnu4HI GCNGC 5 cut(s) 19, 96, 288, 489, 589
FokI GGATG 2 cut(s) 897, 970
Fsp4HI GCNGC 5 cut(s) 19, 96, 288, 489, 589
GlaI GCGC 1 cut(s) 1242
GluI GCNGC 5 cut(s) 19, 96, 288, 489, 589
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 5 cut(s) 301, 588, 815, 973, 1176
HapII CCGG 2 cut(s) 1161, 1361
HgaI GACGC 1 cut(s) 1059
HhaI GCGC 1 cut(s) 1243
Hin1I GRCGYC 1 cut(s) 980
Hin6I GCGC 1 cut(s) 1241
HinP1I GCGC 1 cut(s) 1241
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 3 cut(s) 845, 1135, 1633
HpaII CCGG 2 cut(s) 1161, 1361
HphI GGTGA 3 cut(s) 24, 1112, 1552
Hpy166II GTNNAC 5 cut(s) 661, 793, 883, 1103, 1585
Hpy188I TCNGA 9 cut(s) 186, 198, 600, 721, 864, 1045, 1375, 1453, 1632
Hpy8I GTNNAC 5 cut(s) 661, 793, 883, 1103, 1585
Hpy99I CGWCG 3 cut(s) 566, 884, 1075
HpyAV CCTTC 5 cut(s) 662, 716, 720, 1040, 1596
HpyCH4III ACNGT 4 cut(s) 544, 684, 880, 1144
HpyCH4IV ACGT 5 cut(s) 52, 657, 789, 888, 980
HpyCH4V TGCA 7 cut(s) 224, 287, 547, 702, 1029, 1504, 1525
HpyF10VI GCNNNNNNNGC 6 cut(s) 169, 284, 442, 1157, 1290, 1346
HpyF3I CTNAG 5 cut(s) 197, 512, 718, 1496, 1598
HpySE526I ACGT 5 cut(s) 52, 657, 789, 888, 980
Hsp92I GRCGYC 1 cut(s) 980
HspAI GCGC 1 cut(s) 1241
KpnI GGTACC 1 cut(s) 1189
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 5 cut(s) 29, 522, 853, 859, 940
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 5 cut(s) 325, 364, 426, 621, 1248
Lsp1109I GCAGC 4 cut(s) 5, 82, 299, 500
LweI GCATC 4 cut(s) 919, 1057, 1228, 1366
MaeII ACGT 5 cut(s) 52, 657, 789, 888, 980
MaeIII GTNAC 1 cut(s) 144
MalI GATC 5 cut(s) 31, 524, 855, 861, 942
MboI GATC 5 cut(s) 29, 522, 853, 859, 940
MboII GAAGA 7 cut(s) 201, 420, 465, 677, 1082, 1160, 1453
MflI RGATCY 2 cut(s) 853, 859
MhlI GDGCHC 1 cut(s) 1301
MlsI TGGCCA 2 cut(s) 815, 1176
MluCI AATT 7 cut(s) 241, 259, 526, 755, 997, 1083, 1408
MluNI TGGCCA 2 cut(s) 815, 1176
MlyI GAGTC 1 cut(s) 1129
Mox20I TGGCCA 2 cut(s) 815, 1176
MroXI GAANNNNTTC 1 cut(s) 644
MscI TGGCCA 2 cut(s) 815, 1176
MseI TTAA 9 cut(s) 176, 281, 632, 735, 891, 1053, 1086, 1196, 1607
MslI CAYNNNNRTG 2 cut(s) 1170, 1469
Msp20I TGGCCA 2 cut(s) 815, 1176
MspA1I CMGCKG 2 cut(s) 314, 491
MspI CCGG 2 cut(s) 1161, 1361
MspR9I CCNGG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 1506
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 1617
MwoI GCNNNNNNNGC 6 cut(s) 169, 284, 442, 1157, 1290, 1346
NdeII GATC 5 cut(s) 29, 522, 853, 859, 940
NlaIV GGNNCC 3 cut(s) 678, 972, 1187
NmeAIII GCCGAG 1 cut(s) 1375
PagI TCATGA 2 cut(s) 961, 1621
PciSI GCTCTTC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PctI GAATGC 1 cut(s) 1506
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 845, 1633
PkrI GCNGC 5 cut(s) 20, 97, 289, 490, 590
PleI GAGTC 1 cut(s) 1129
PpsI GAGTC 1 cut(s) 1129
Ppu21I YACGTR 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 676
PshBI ATTAAT 3 cut(s) 632, 735, 1086
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 3 cut(s) 678, 972, 1187
PspPI GGNCC 4 cut(s) 676, 695, 971, 1547
PspPPI RGGWCCY 1 cut(s) 676
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 2 cut(s) 196, 832
PsuI RGATCY 2 cut(s) 853, 859
PvuII CAGCTG 2 cut(s) 314, 491
RseI CAYNNNNRTG 2 cut(s) 1170, 1469
SalI GTCGAC 1 cut(s) 881
SapI GCTCTTC 1 cut(s) 214
SaqAI TTAA 9 cut(s) 176, 281, 632, 735, 891, 1053, 1086, 1196, 1607
SatI GCNGC 5 cut(s) 19, 96, 288, 489, 589
Sau3AI GATC 5 cut(s) 29, 522, 853, 859, 940
Sau96I GGNCC 4 cut(s) 676, 695, 971, 1547
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 1 cut(s) 1129
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 1301
SfaNI GCATC 4 cut(s) 919, 1057, 1228, 1366
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 3 cut(s) 676, 695, 1547
SmiMI CAYNNNNRTG 2 cut(s) 1170, 1469
SmlI CTYRAG 2 cut(s) 291, 1108
SmoI CTYRAG 2 cut(s) 291, 1108
SnaBI TACGTA 1 cut(s) 658
SpeI ACTAGT 3 cut(s) 329, 502, 550
Sse9I AATT 7 cut(s) 241, 259, 526, 755, 997, 1083, 1408
SsiI CCGC 1 cut(s) 589
SspI AATATT 1 cut(s) 1612
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 2 cut(s) 931, 1553
TaaI ACNGT 4 cut(s) 544, 684, 880, 1144
TaiI ACGT 5 cut(s) 55, 660, 792, 891, 983
TaqI TCGA 5 cut(s) 28, 530, 882, 1133, 1138
TasI AATT 7 cut(s) 241, 259, 526, 755, 997, 1083, 1408
TatI WGTACW 3 cut(s) 248, 553, 759
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 2 cut(s) 845, 1633
Tru1I TTAA 9 cut(s) 176, 281, 632, 735, 891, 1053, 1086, 1196, 1607
Tru9I TTAA 9 cut(s) 176, 281, 632, 735, 891, 1053, 1086, 1196, 1607
TscAI CASTG 3 cut(s) 549, 687, 1402
TseI GCWGC 4 cut(s) 18, 95, 287, 488
TspRI CASTG 3 cut(s) 549, 687, 1402
VpaK11BI GGWCC 3 cut(s) 676, 695, 1547
VspI ATTAAT 3 cut(s) 632, 735, 1086
XagI CCTNNNNNAGG 1 cut(s) 616
XapI RAATTY 2 cut(s) 259, 997
XbaI TCTAGA 2 cut(s) 404, 856
XmaJI CCTAGG 1 cut(s) 1553
XmiI GTMKAC 2 cut(s) 660, 882
XmnI GAANNNNTTC 1 cut(s) 644
ZraI GACGTC 1 cut(s) 981
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.