Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000727

Physical Location & Seq

Genomic Coordinates Forward (+)

52940528 .. 52942408

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGAGATAGAGATATGAGGGCTGCTCGTACTTACAGACCAGTTTTTTCATTTTCCTGGTTTCTAGCAGTGTTACTGGTAATACCTTTGCTGGTGTTGCTGTTAATCTTTCTGATACAGCCTCTGAGTTCAAGCTCTTCATCATCAACTGCAACTTGGATAGTTGATAATTCTAGTACTTCTGGAAATTTTAGCTACTCTCTAGCTTTAACTGCAGCTCAAGAATGGCCTCAACCTCCAGCTGAAGCTCCACTTACTAGTTTTTTATATGGTAGTCCAAGTCCTGCTCCTGCCCCTCAAATATTAACTGGGGCTATACAAGTTGGTGGTTCTAGAAGAGTAAAATCATGGAGGAACATGAAGCTAGATAAGCTAGAAGCAAGTTTGGGCAAAGCAAGGTCTTCCATAAGAGAAGCAGCTGGTACATCACTAGTACGACTTAGGAACAAGATCAATTCGACATCAAAAACAGTGCAACTAGTACATGACGACGACCCCGACTATGTTCCTCATGGCCGCATATATCGGAACGCCCACGCCTTTCATAGGAGCTACCTATTAATGGAGAAGCTGTTCAAGATATACGTATACGAAGAAGGAGAGGTCCCACTGTTTCATAATGGTCCATGCAGGAGCATATATTCCTCAGAAGGAAGGTTCATTCATGAAATGGAGATGGGCAAATTGTACAGAACAACAGACCCAGATGAAGCTCACGTTTACTTCATTCCAGTAAGTGTGACCAATCTGGTTCAGTACCTCTATGTCCCCGATTCAAAAGATCTACATCCGATGAAGCGAGCCATCGTCGACTACGTTAAAGTCATTGCTGATAGGCATCCTTTCTGGAATAGAAGCCTTGGGGCTGATCATTTCATGCTTTCATGTCATGACTGGGTACGCAGCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCATCTTCATCCTCGTTCCTTCTTCTTCGTCTTCGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

326

Amino Acids

36.75

Weight (kDa)

9.43

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	189 - 303	3.2e-16	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03795
fragaria_vesca	FvH4_1g25430 FvH4_2g00470 FvH4_2g02351 FvH4_2g02352 FvH4_2g02430 FvH4_6g17390 FvH4_6g17390 FvH4_6g17390
malus_domestica	MD05G1001700.v1.1 MD10G1002900.v1.1 MD12G1101000.v1.1 MD14G1095400.v1.1 MD15G1138300.v1.1 MD15G1138400.v1.1
prunus_persica	Prupe.4G281300_v2.0.a1 Prupe.7G121600_v2.0.a1 Prupe.8G004600_v2.0.a1
pyrus_communis	pycom05g00190 pycom10g00230 pycom12g09940 pycom14g09360 pycom15g12460 pycom15g12470 pycom15g12480 pycom15g12490 pycom15g12510 pycom15g12520
rosa_chinensis	RchiOBHm_Chr2g0123451 RchiOBHm_Chr3g0471641 RchiOBHm_Chr6g0246291 RchiOBHm_Chr6g0250461
rosa_laevigata	RLG00000015265 RLG00000015539 RLG00000018756 RLG00000024149 RLG00000026019
rosa_multiflora	Rmu_sc0000411.1_g000001 Rmu_sc0001066.1_g000013 Rmu_sc0005631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00120630 Rroxscaffold_2G00120640 Rroxscaffold_6G00409720 Rroxscaffold_7G00214700 Rroxscaffold_7G00217220
rosa_rugosa	Rorug02G0245900 Rorug03G0118500 Rorug03G0118600 Rorug05G0496700 Rorug05G0520100
rosa_samantha	Rh2AG304500 Rh2BG312600 Rh2CG291000 Rh2DG328500 Rh3AG169700 Rh3BG195400 Rh3CG186100 Rh3CG195600 Rh3DG179600 Rh6AG005900 Rh6AG034300 Rh6BG004700 Rh6CG004100 Rh6CG029800 Rh6DG003900
rosa_wichuraiana	Rw0G008950 Rw0G015450 Rw2G024400 Rw6G000650 Rw6G000720 Rw6G002770 Rw6G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	588, 810
AciI	CCGC	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	8 cut(s)	31, 178, 424, 435, 483, 689, 758, 900
AfiI	CCNNNNNNNGG	2 cut(s)	546, 562
AgsI	TTSAA	3 cut(s)	132, 577, 777
AhlI	ACTAGT	3 cut(s)	257, 430, 478
AjnI	CCWGG	1 cut(s)	56
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	2 cut(s)	227, 514
ApeKI	GCWGC	4 cut(s)	23, 215, 416, 903
ApoI	RAATTY	1 cut(s)	187
AseI	ATTAAT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	572
AspS9I	GGNCC	2 cut(s)	604, 623
AvaII	GGWCC	2 cut(s)	604, 623
BbsI	GAAGAC	2 cut(s)	393, 962
BbvI	GCAGC	4 cut(s)	10, 227, 428, 915
BccI	CCATC	2 cut(s)	670, 812
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	1 cut(s)	868
BcuI	ACTAGT	3 cut(s)	257, 430, 478
BfaI	CTAG	9 cut(s)	65, 174, 203, 258, 333, 365, 374, 431, 479
BfmI	CTRYAG	1 cut(s)	213
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	5 cut(s)	24, 216, 417, 517, 904
BlsI	GCNGC	5 cut(s)	25, 217, 418, 518, 905
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	604, 623
BmgT120I	GGNCC	2 cut(s)	604, 623
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	58
BmrI	ACTGGG	2 cut(s)	318, 904
BmsI	GCATC	1 cut(s)	847
BmuI	ACTGGG	2 cut(s)	318, 904
BpiI	GAAGAC	2 cut(s)	393, 962
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	586
BsaBI	GATNNNNATC	2 cut(s)	786, 837
BsaJI	CCNNGG	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 562
Bse1I	ACTGG	5 cut(s)	41, 81, 313, 731, 899
Bse3DI	GCAATG	1 cut(s)	825
Bse8I	GATNNNNATC	2 cut(s)	786, 837
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	3 cut(s)	787, 838, 947
BseJI	GATNNNNATC	2 cut(s)	786, 837
BseLI	CCNNNNNNNGG	2 cut(s)	546, 562
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	2 cut(s)	116, 660
BseNI	ACTGG	5 cut(s)	41, 81, 313, 731, 899
BseRI	GAGGAG	5 cut(s)	898, 901, 904, 907, 910
BseXI	GCAGC	4 cut(s)	10, 227, 428, 915
BshFI	GGCC	2 cut(s)	229, 516
BslFI	GGGAC	2 cut(s)	590, 752
BslI	CCNNNNNNNGG	2 cut(s)	546, 562
BsmFI	GGGAC	2 cut(s)	590, 752
BsnI	GGCC	2 cut(s)	229, 516
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	450, 781, 868
BspACI	CCGC	1 cut(s)	517
BspANI	GGCC	2 cut(s)	229, 516
BspCNI	CTCAG	2 cut(s)	117, 659
BspHI	TCATGA	2 cut(s)	664, 889
BspLI	GGNNCC	1 cut(s)	606
BspMAI	CTGCAG	1 cut(s)	217
BspQI	GCTCTTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	825
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	5 cut(s)	41, 81, 313, 731, 899
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	3 cut(s)	450, 781, 868
BssNAI	GTATAC	1 cut(s)	589
BssT1I	CCWWGG	1 cut(s)	859
Bst1107I	GTATAC	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	472, 612
Bst6I	CTCTTC	5 cut(s)	142, 331, 928, 934, 940
BstAUI	TGTACA	1 cut(s)	687
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	801
BstDEI	CTNAG	3 cut(s)	125, 440, 646
BstENI	CCTNNNNNAGG	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	787, 838, 947
BstKTI	GATC	3 cut(s)	453, 784, 871
BstMBI	GATC	3 cut(s)	450, 781, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 212, 370
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	586
BstV1I	GCAGC	4 cut(s)	10, 227, 428, 915
BstV2I	GAAGAC	2 cut(s)	393, 962
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BstZ17I	GTATAC	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	229, 516
BtsCI	GGATG	3 cut(s)	787, 838, 947
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	3 cut(s)	75, 477, 608
Cac8I	GCNNGC	1 cut(s)	801
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	2 cut(s)	664, 889
Cfr13I	GGNCC	2 cut(s)	604, 623
Csp6I	GTAC	8 cut(s)	30, 177, 423, 434, 482, 688, 757, 899
CviAII	CATG	9 cut(s)	348, 358, 485, 512, 627, 665, 877, 885, 890
CviQI	GTAC	8 cut(s)	30, 177, 423, 434, 482, 688, 757, 899
DdeI	CTNAG	3 cut(s)	125, 440, 646
DpnI	GATC	3 cut(s)	452, 783, 870
DpnII	GATC	3 cut(s)	450, 781, 868
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	5 cut(s)	142, 331, 928, 934, 940
EarI	CTCTTC	5 cut(s)	142, 331, 928, 934, 940
Eco105I	TACGTA	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	859
Eco47I	GGWCC	2 cut(s)	604, 623
Eco57I	CTGAAG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	9 cut(s)	351, 361, 488, 515, 630, 668, 880, 888, 893
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	590, 752
FatI	CATG	9 cut(s)	347, 357, 484, 511, 626, 664, 876, 884, 889
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	2 cut(s)	588, 810
Fnu4HI	GCNGC	5 cut(s)	24, 216, 417, 517, 904
FokI	GGATG	3 cut(s)	774, 825, 934
Fsp4HI	GCNGC	5 cut(s)	24, 216, 417, 517, 904
FspBI	CTAG	9 cut(s)	65, 174, 203, 258, 333, 365, 374, 431, 479
GluI	GCNGC	5 cut(s)	24, 216, 417, 517, 904
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	229, 516
Hin1II	CATG	9 cut(s)	351, 361, 488, 515, 630, 668, 880, 888, 893
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	2 cut(s)	773, 975
Hpy166II	GTNNAC	3 cut(s)	589, 721, 811
Hpy188I	TCNGA	6 cut(s)	114, 126, 528, 649, 792, 980
Hpy188III	TCNNGA	7 cut(s)	183, 221, 333, 577, 665, 847, 890
Hpy8I	GTNNAC	3 cut(s)	589, 721, 811
Hpy99I	CGWCG	2 cut(s)	494, 812
HpyAV	CCTTC	4 cut(s)	590, 644, 648, 968
HpyCH4III	ACNGT	2 cut(s)	472, 612
HpyCH4IV	ACGT	3 cut(s)	585, 717, 816
HpyCH4V	TGCA	4 cut(s)	152, 215, 475, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 212, 370
HpyF3I	CTNAG	3 cut(s)	125, 440, 646
HpySE526I	ACGT	3 cut(s)	585, 717, 816
Hsp92II	CATG	9 cut(s)	351, 361, 488, 515, 630, 668, 880, 888, 893
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	450, 781, 868
LguI	GCTCTTC	1 cut(s)	142
LmnI	GCTCC	5 cut(s)	253, 292, 549, 633, 911
Lsp1109I	GCAGC	4 cut(s)	10, 227, 428, 915
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	9 cut(s)	65, 174, 203, 258, 333, 365, 374, 431, 479
MaeII	ACGT	3 cut(s)	585, 717, 816
MaeIII	GTNAC	2 cut(s)	72, 739
MalI	GATC	3 cut(s)	452, 783, 870
MboI	GATC	3 cut(s)	450, 781, 868
MflI	RGATCY	1 cut(s)	781
MluCI	AATT	4 cut(s)	169, 187, 454, 683
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	5 cut(s)	104, 209, 305, 560, 819
MspA1I	CMGCKG	2 cut(s)	242, 419
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	97, 212, 370
NdeII	GATC	3 cut(s)	450, 781, 868
NlaIII	CATG	9 cut(s)	351, 361, 488, 515, 630, 668, 880, 888, 893
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	1 cut(s)	739
PagI	TCATGA	2 cut(s)	664, 889
PciSI	GCTCTTC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	2 cut(s)	495, 813
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	773, 975
PkrI	GCNGC	5 cut(s)	25, 217, 418, 518, 905
Ppu21I	YACGTR	1 cut(s)	586
PpuMI	RGGWCCY	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	2 cut(s)	604, 623
PspPPI	RGGWCCY	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	781
PvuII	CAGCTG	2 cut(s)	242, 419
RsaI	GTAC	8 cut(s)	31, 178, 424, 435, 483, 689, 758, 900
RsaNI	GTAC	8 cut(s)	30, 177, 423, 434, 482, 688, 757, 899
SalI	GTCGAC	1 cut(s)	809
SapI	GCTCTTC	1 cut(s)	142
SaqAI	TTAA	5 cut(s)	104, 209, 305, 560, 819
SatI	GCNGC	5 cut(s)	24, 216, 417, 517, 904
Sau3AI	GATC	3 cut(s)	450, 781, 868
Sau96I	GGNCC	2 cut(s)	604, 623
ScaI	AGTACT	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	58
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	604, 623
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SnaBI	TACGTA	1 cut(s)	586
SpeI	ACTAGT	3 cut(s)	257, 430, 478
Sse9I	AATT	4 cut(s)	169, 187, 454, 683
SsiI	CCGC	1 cut(s)	517
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	9 cut(s)	65, 174, 203, 258, 333, 365, 374, 431, 479
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	2 cut(s)	472, 612
TaiI	ACGT	3 cut(s)	588, 720, 819
TaqI	TCGA	3 cut(s)	458, 810, 973
TasI	AATT	4 cut(s)	169, 187, 454, 683
TatI	WGTACW	3 cut(s)	176, 481, 687
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	773, 975
Tru1I	TTAA	5 cut(s)	104, 209, 305, 560, 819
Tru9I	TTAA	5 cut(s)	104, 209, 305, 560, 819
TscAI	CASTG	3 cut(s)	75, 477, 615
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	4 cut(s)	23, 215, 416, 903
Tsp45I	GTSAC	1 cut(s)	739
TspRI	CASTG	3 cut(s)	75, 477, 615
VpaK11BI	GGWCC	2 cut(s)	604, 623
VspI	ATTAAT	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	544
XapI	RAATTY	1 cut(s)	187
XbaI	TCTAGA	1 cut(s)	332
XmiI	GTMKAC	2 cut(s)	588, 810
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	9 cut(s)	65, 174, 203, 258, 333, 365, 374, 431, 479
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.