RLG00000015265

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000727
Physical Location & Seq
Forward (+)
63791852 .. 63793951
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015265

Sequence Viewer

Length: 1392 bp
ATGGTGAGCCACAGTGGCGGTGGTGGTGGTGTGGCTACTACCTCCAAGGCCCACCGCCTGGTGTTCATTCTCCCAATCATTATCATCTTTGGATTGCTTTCATGGGTTTTCACTTCTCACGTGGTCTCTACTCCAAAGTCTTCAACAAAGATTGGATCCAGTTTTGTTGTTGGTGTTGAAGTGTACGGTACCACAATGGAAAAAAATCACTCTCAGATCATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGACTACGACAAGCTCGTGTCGCAATTAAGTTGGGAAACCGATCACAAGATTCCGACTACATCCCTCATGGACCAATGTATTGGAATGCTAATGCATTTCACAGGAGCTATATTGAAATGGAGAAACAGTTCAAGGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGTCCTTGCAAAAGCATATATTCCATGGAGGGGAACTTTATACATGAACTGGAGGTGAATAAGCAATTTCGGACGCTAGATCCTGATACGGCACATGTTTACTTTCTTCCCTTCAGTGTGACAATGTTGGTTAAGTATGTTTATGTGCCCAACTCACATGATTTCGGTCCAATCAAGCAAACAGTGAGAGACTATGCGAATCTTATCTCCACCAAGTATCCGTTCTGGAATAGAAGCCTAGCAGCAGATCACTTTATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCTTTTCCAGAGATCAACCTTCCAAATGGAAACACACATGGTTTAATTGGTGGACCTTCTCCAAGGGTACGAACTGTGCTAGCTTTTTTTGCAGGAGGACTTCATGGCCCTATTAGGCCTCTTTTGCTGGAGTTGTGGGAGAACAAAGATCAGGACATAATGGTGCACCAGTACCTTTCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCGGTGCTCATCTCAGATCATTATGTGGCCCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGTTTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAATGTCAGAGTTCGTGATGGCCAGCCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

464

Amino Acids

52.69

Weight (kDa)

9.36

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 129 - 410 1.2e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
Acc65I GGTACC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 2 cut(s) 18, 55
AclWI GGATC 3 cut(s) 150, 163, 515
AcoI YGGCCR 1 cut(s) 1378
AcsI RAATTY 1 cut(s) 1204
AcuI CTGAAG 2 cut(s) 538, 813
AcvI CACGTG 1 cut(s) 121
AfaI GTAC 4 cut(s) 185, 190, 888, 992
AfiI CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
AflIII ACRYGT 1 cut(s) 535
AhdI GACNNNNNGTC 1 cut(s) 1361
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 3 cut(s) 278, 372, 902
AluI AGCT 3 cut(s) 278, 372, 902
Alw21I GWGCWC 2 cut(s) 987, 1119
Alw26I GTCTC 2 cut(s) 130, 624
Alw44I GTGCAC 1 cut(s) 983
AlwI GGATC 3 cut(s) 150, 163, 515
AoxI GGCC 6 cut(s) 48, 719, 925, 935, 1137, 1378
ApaLI GTGCAC 1 cut(s) 983
ApeKI GCWGC 1 cut(s) 683
ApoI RAATTY 1 cut(s) 1204
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 2 cut(s) 392, 1169
Asp718I GGTACC 1 cut(s) 188
AspS9I GGNCC 8 cut(s) 49, 335, 443, 608, 719, 872, 926, 1138
AsuHPI GGTGA 3 cut(s) 16, 508, 1160
AsuNHI GCTAGC 1 cut(s) 898
AvaII GGWCC 4 cut(s) 335, 443, 608, 872
BaeGI GKGCMC 2 cut(s) 591, 987
BalI TGGCCA 1 cut(s) 1380
BamHI GGATCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 188
BauI CACGAG 1 cut(s) 279
BbrPI CACGTG 1 cut(s) 121
BbsI GAAGAC 3 cut(s) 132, 1312, 1360
Bbv12I GWGCWC 2 cut(s) 987, 1119
BbvI GCAGC 1 cut(s) 695
BccI CCATC 1 cut(s) 1370
BceAI ACGGC 1 cut(s) 546
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 2 cut(s) 669, 1209
BcoDI GTCTC 2 cut(s) 130, 624
BfaI CTAG 5 cut(s) 248, 518, 680, 899, 1071
BfuI GTATCC 2 cut(s) 669, 1209
BglI GCCNNNNNGGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 684
BlsI GCNGC 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 4 cut(s) 335, 443, 608, 872
BmeRI GACNNNNNGTC 1 cut(s) 1361
BmgT120I GGNCC 8 cut(s) 49, 335, 443, 608, 719, 872, 926, 1138
BmiI GGNNCC 4 cut(s) 157, 190, 720, 1140
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 1141
BmtI GCTAGC 1 cut(s) 902
BpiI GAAGAC 3 cut(s) 132, 1312, 1360
BplI GAGNNNNNCTC 2 cut(s) 1280, 1312
BpmI CTGGAG 3 cut(s) 278, 512, 968
BsaAI YACGTR 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 4 cut(s) 45, 465, 881, 1076
BsaWI WCCGGW 1 cut(s) 1111
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
Bse1I ACTGG 5 cut(s) 159, 495, 988, 1105, 1166
Bse3DI GCAATG 1 cut(s) 784
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 4 cut(s) 45, 465, 881, 1076
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 3 cut(s) 227, 1137, 1363
BseNI ACTGG 5 cut(s) 159, 495, 988, 1105, 1166
BseRI GAGGAG 1 cut(s) 1290
BseSI GKGCMC 2 cut(s) 591, 987
BseXI GCAGC 1 cut(s) 695
BshFI GGCC 6 cut(s) 50, 721, 927, 937, 1139, 1380
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 2 cut(s) 987, 1119
BsiSI CCGG 1 cut(s) 1112
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
BsmAI GTCTC 2 cut(s) 130, 624
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 2 cut(s) 355, 1257
BsnI GGCC 6 cut(s) 50, 721, 927, 937, 1139, 1380
Bso31I GGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 3 cut(s) 591, 987, 1119
Bsp143I GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 2 cut(s) 18, 55
BspANI GGCC 6 cut(s) 50, 721, 927, 937, 1139, 1380
BspCNI CTCAG 3 cut(s) 226, 1136, 1362
BspHI TCATGA 1 cut(s) 1221
BspLI GGNNCC 4 cut(s) 157, 190, 720, 1140
BspOI GCTAGC 1 cut(s) 902
BspPI GGATC 3 cut(s) 150, 163, 515
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 5 cut(s) 159, 495, 988, 1105, 1166
BssECI CCNNGG 4 cut(s) 45, 465, 881, 1076
BssMI GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 4 cut(s) 45, 465, 881, 1076
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 5 cut(s) 14, 188, 393, 625, 895
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 706, 900, 1382
BstDEI CTNAG 4 cut(s) 213, 1123, 1247, 1349
BstDSI CCRYGG 1 cut(s) 465
BstENI CCTNNNNNAGG 1 cut(s) 998
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 8 cut(s) 158, 219, 308, 523, 691, 834, 970, 1129
BstMAI GTCTC 2 cut(s) 130, 624
BstMBI GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
BstMWI GCNNNNNNNGC 5 cut(s) 15, 262, 284, 908, 943
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 2 cut(s) 591, 987
BstV1I GCAGC 1 cut(s) 695
BstV2I GAAGAC 3 cut(s) 132, 1312, 1360
BstX2I RGATCY 2 cut(s) 155, 520
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 2 cut(s) 155, 520
BsuI GTATCC 2 cut(s) 669, 1209
BsuRI GGCC 6 cut(s) 50, 721, 927, 937, 1139, 1380
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 4 cut(s) 19, 562, 630, 1098
Cac8I GCNNGC 3 cut(s) 706, 900, 1382
CciI TCATGA 1 cut(s) 1221
Cfr13I GGNCC 8 cut(s) 49, 335, 443, 608, 719, 872, 926, 1138
CseI GACGC 1 cut(s) 523
Csp6I GTAC 4 cut(s) 184, 189, 887, 991
CviQI GTAC 4 cut(s) 184, 189, 887, 991
DdeI CTNAG 4 cut(s) 213, 1123, 1247, 1349
DpnI GATC 8 cut(s) 157, 218, 307, 522, 690, 833, 969, 1128
DpnII GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
DriI GACNNNNNGTC 1 cut(s) 1361
EaeI YGGCCR 1 cut(s) 1378
Eam1105I GACNNNNNGTC 1 cut(s) 1361
Eco130I CCWWGG 4 cut(s) 45, 465, 881, 1076
Eco147I AGGCCT 1 cut(s) 937
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 4 cut(s) 335, 443, 608, 872
Eco57I CTGAAG 2 cut(s) 538, 813
Eco72I CACGTG 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 998
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 4 cut(s) 45, 465, 881, 1076
EcoT22I ATGCAT 1 cut(s) 361
ErhI CCWWGG 4 cut(s) 45, 465, 881, 1076
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FaqI GGGAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 684
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 684
FspBI CTAG 5 cut(s) 248, 518, 680, 899, 1071
GluI GCNGC 1 cut(s) 684
GsuI CTGGAG 3 cut(s) 278, 512, 968
HaeIII GGCC 6 cut(s) 50, 721, 927, 937, 1139, 1380
HapII CCGG 1 cut(s) 1112
HgaI GACGC 1 cut(s) 523
HinfI GANTC 3 cut(s) 314, 640, 1356
HpaII CCGG 1 cut(s) 1112
HphI GGTGA 3 cut(s) 16, 508, 1160
Hpy166II GTNNAC 4 cut(s) 184, 541, 872, 985
Hpy188I TCNGA 8 cut(s) 216, 319, 513, 793, 1126, 1158, 1352, 1367
Hpy188III TCNNGA 7 cut(s) 248, 524, 667, 827, 971, 1222, 1373
Hpy8I GTNNAC 4 cut(s) 184, 541, 872, 985
HpyAV CCTTC 7 cut(s) 410, 562, 788, 816, 848, 885, 1254
HpyCH4III ACNGT 5 cut(s) 14, 188, 393, 625, 895
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 6 cut(s) 359, 450, 777, 911, 985, 1255
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 262, 284, 908, 943
HpyF3I CTNAG 4 cut(s) 213, 1123, 1247, 1349
HpySE526I ACGT 1 cut(s) 120
KpnI GGTACC 1 cut(s) 192
Kzo9I GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 1 cut(s) 1141
MaeI CTAG 5 cut(s) 248, 518, 680, 899, 1071
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 559
MalI GATC 8 cut(s) 157, 218, 307, 522, 690, 833, 969, 1128
MboI GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
MboII GAAGA 4 cut(s) 132, 539, 1312, 1365
MflI RGATCY 2 cut(s) 155, 520
MhlI GDGCHC 3 cut(s) 591, 987, 1119
MlsI TGGCCA 1 cut(s) 1380
MluCI AATT 4 cut(s) 288, 506, 864, 1204
MluNI TGGCCA 1 cut(s) 1380
MlyI GAGTC 1 cut(s) 1350
MmeI TCCRAC 1 cut(s) 342
Mox20I TGGCCA 1 cut(s) 1380
Mph1103I ATGCAT 1 cut(s) 361
MroXI GAANNNNTTC 2 cut(s) 392, 1169
MscI TGGCCA 1 cut(s) 1380
MseI TTAA 6 cut(s) 222, 291, 573, 863, 1191, 1390
MslI CAYNNNNRTG 1 cut(s) 980
Msp20I TGGCCA 1 cut(s) 1380
MspI CCGG 1 cut(s) 1112
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 2 cut(s) 355, 1257
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 5 cut(s) 15, 262, 284, 908, 943
NcoI CCATGG 1 cut(s) 465
NdeII GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
NheI GCTAGC 1 cut(s) 898
NlaIV GGNNCC 4 cut(s) 157, 190, 720, 1140
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 539
PagI TCATGA 1 cut(s) 1221
PceI AGGCCT 1 cut(s) 937
PciI ACATGT 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PctI GAATGC 2 cut(s) 355, 1257
PdmI GAANNNNTTC 2 cut(s) 392, 1169
PfeI GAWTC 2 cut(s) 314, 640
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 1 cut(s) 685
PleI GAGTC 1 cut(s) 1350
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 1 cut(s) 1350
Ppu21I YACGTR 1 cut(s) 121
PscI ACATGT 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 1017
Psp6I CCWGG 1 cut(s) 57
PspCI CACGTG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 4 cut(s) 157, 190, 720, 1140
PspPI GGNCC 8 cut(s) 49, 335, 443, 608, 719, 872, 926, 1138
PsuI RGATCY 2 cut(s) 155, 520
RsaI GTAC 4 cut(s) 185, 190, 888, 992
RsaNI GTAC 4 cut(s) 184, 189, 887, 991
RseI CAYNNNNRTG 1 cut(s) 980
SaqAI TTAA 6 cut(s) 222, 291, 573, 863, 1191, 1390
SatI GCNGC 1 cut(s) 684
Sau3AI GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
Sau96I GGNCC 8 cut(s) 49, 335, 443, 608, 719, 872, 926, 1138
SchI GAGTC 1 cut(s) 1350
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 3 cut(s) 591, 987, 1119
SfaNI GCATC 1 cut(s) 1141
SinI GGWCC 4 cut(s) 335, 443, 608, 872
SmiMI CAYNNNNRTG 1 cut(s) 980
Sse9I AATT 4 cut(s) 288, 506, 864, 1204
SseBI AGGCCT 1 cut(s) 937
SsiI CCGC 2 cut(s) 18, 55
SspMI CTAG 5 cut(s) 248, 518, 680, 899, 1071
StuI AGGCCT 1 cut(s) 937
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 4 cut(s) 45, 465, 881, 1076
TaaI ACNGT 5 cut(s) 14, 188, 393, 625, 895
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 761
TaqII GACCGA 1 cut(s) 596
TasI AATT 4 cut(s) 288, 506, 864, 1204
TfiI GAWTC 2 cut(s) 314, 640
Tru1I TTAA 6 cut(s) 222, 291, 573, 863, 1191, 1390
Tru9I TTAA 6 cut(s) 222, 291, 573, 863, 1191, 1390
TscAI CASTG 4 cut(s) 19, 562, 630, 1105
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 5 cut(s) 55, 90, 425, 501, 911
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 4 cut(s) 19, 562, 630, 1105
Van91I CCANNNNNTGG 1 cut(s) 58
VneI GTGCAC 1 cut(s) 983
VpaK11BI GGWCC 4 cut(s) 335, 443, 608, 872
VspI ATTAAT 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 998
XapI RAATTY 1 cut(s) 1204
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmnI GAANNNNTTC 2 cut(s) 392, 1169
XspI CTAG 5 cut(s) 248, 518, 680, 899, 1071
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.