Rw6G000650

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000727
Physical Location & Seq
Reverse (-)
1122114 .. 1124626
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000650.1

Sequence Viewer

Length: 1572 bp
ATGAAGCCTCTCAACAACAAGCCATCTTTGTTTTCACCATTTTGGTCATCTTCTACTTCTTCTTCTTCGGTTTTGATTCTAGTGCTTGTAGCTCTCATTTGCACGTTGGGCGTCACAAGTTCGTTTTCATGGTCATGGAGAGTTGGTAACGTACTGGGTACTGACTACTCTTCATCACTAGCTTTCTCAACAAAAGCAAGGCCTAGTTCTCAAGTAGTGCGTGAGGAAGCGGCAGCAGAAGCTGATCCTATTGTCAGTCCATCAAATGATTCAGAACCAAATGAAACAGTACATCTTCCCCCCAATCAAATTGTAGAGAAACAAGAGGTATTGTTGAATGATAAAGAATTTGGTGAAATTAATGCTACTTCTGCATCTGAAACAATAAGTATAAAAAGATACAGCAGGTTAGAGAAACTTGAAGCAAGTTTGGCTGGAGTTCGGGCATCCATAAGAGAAGCTGCTCGAGTACGAAATCTGACTTCTACCCATGAAGATCCAGACTATGTTCCTCAAGGTCCAATATATAGAAATGCAAATGCTTTTCACAGGAGTTACTTGGAGATGGAAAGGCTGTTCAAGATATATGTATATCAAGAAGGAGATCCACCCATATTTCATAATGGTCCTTGCAAGAGCATATATTCTACAGAGGGAAGGTTCATTCATGAAATGGAAATGGACAATACTTATAGGACCACAAACCCAGACGATGCCCTTGTTTATTTTCTTCCATTCAGTGTGGTGATGTTGGTTCAGTACCTCTATGTGGCCGAGTCCCATGACACTGAGTCCATTGGTCGTGCTGTGGTTGACTATGTCAATGTCATCTCTGATAAACATCCCTTTTGGAATCGTAGCCTTGGTGCTGACCACTTTATGCTTTCCTGCCATGATTGGGGGCCTCGCACATCTTCTTATGTTCCTCAGCTATACCACAAGTCCATAAGGGTACTATGCAATGCAAACACTTCGGAAGGATTCAATCCTTCCAAAGATGTGTCATTTCCAGAAATCCATCTCCGAACTGGCGAAACCAAAGGACTTCTCGGTGGTCTCTCCCCCTCTCGCCGGTCAATTCTCGCCTTCTTTGCAGGCCGGCTGCATGGCCACATAAGGTACCTGCTTTTAAATGAATGGAAAGAAAAAGACAAAGATGTGCAAGTTTATGACCAACTTCCCCATGGAGTATCCTATGAGTCAATGTTAAAGCAGAGCAAGTTCTGCTTGTGCCCCAGCGGTTACGAAGTGGCGAGCCCAAGAATTGTAGAAGCCATCTACGCAGAATGCGTGCCGGTGTTGATTTCGGATAATTATGTTCCGCCGTTCAGTGATGTTTTAGACTGGAAGTCATTTTCAGTCCAAGTACAAGTGAAGGATATACCAAATATCAAAACAATACTAATGGGAATATCTCAGAGCCAGTACTTGAGAATGCATAGGAGAGTGAAACTGGTGCAGAGGCATTTTGTGGTGAATGGACCTTCCAAGAGATATGACGTTTTCAATATGATTGTTCATTCTATTTGGCTCAGGAGGTTGAATATCCGCATTGAGGATCAGGTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

523

Amino Acids

59.41

Weight (kDa)

6.64

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 190 - 469 6.9e-62 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 396, 1131
Acc65I GGTACC 1 cut(s) 1119
AccB1I GGYRCC 1 cut(s) 1119
AciI CCGC 4 cut(s) 230, 1239, 1322, 1549
AclWI GGATC 4 cut(s) 239, 491, 599, 1566
AcoI YGGCCR 2 cut(s) 771, 1108
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 9 cut(s) 153, 160, 291, 471, 761, 954, 1121, 1368, 1427
AfiI CCNNNNNNNGG 4 cut(s) 769, 898, 1071, 1555
AgsI TTSAA 6 cut(s) 337, 422, 580, 985, 1507, 1543
AhdI GACNNNNNGTC 2 cut(s) 790, 1348
AloI GAACNNNNNNTCC 2 cut(s) 560, 592
AluBI AGCT 5 cut(s) 92, 182, 242, 461, 931
AluI AGCT 5 cut(s) 92, 182, 242, 461, 931
Alw26I GTCTC 1 cut(s) 1061
AlwI GGATC 4 cut(s) 239, 491, 599, 1566
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 5 cut(s) 200, 771, 902, 1096, 1108
ApeKI GCWGC 3 cut(s) 233, 461, 1102
ApoI RAATTY 1 cut(s) 347
AseI ATTAAT 1 cut(s) 360
Asp718I GGTACC 1 cut(s) 1119
AspS9I GGNCC 5 cut(s) 518, 626, 696, 902, 1481
AsuHPI GGTGA 4 cut(s) 27, 365, 757, 1486
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 4 cut(s) 518, 626, 696, 1481
BaeGI GKGCMC 1 cut(s) 1235
BalI TGGCCA 1 cut(s) 1110
BanI GGYRCC 1 cut(s) 1119
BanII GRGCYC 1 cut(s) 1259
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 3 cut(s) 245, 448, 1089
BccI CCATC 5 cut(s) 31, 268, 559, 1026, 1283
BceAI ACGGC 1 cut(s) 1309
BcgI CGANNNNNNTGC 2 cut(s) 954, 988
BciVI GTATCC 1 cut(s) 1201
BcoDI GTCTC 1 cut(s) 1061
BfaI CTAG 3 cut(s) 80, 179, 204
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 2 cut(s) 396, 1131
BfuI GTATCC 1 cut(s) 1201
BisI GCNGC 4 cut(s) 231, 234, 462, 1103
BlsI GCNGC 4 cut(s) 232, 235, 463, 1104
BmcAI AGTACT 1 cut(s) 1427
Bme18I GGWCC 4 cut(s) 518, 626, 696, 1481
BmeRI GACNNNNNGTC 2 cut(s) 790, 1348
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 5 cut(s) 518, 626, 696, 902, 1481
BmiI GGNNCC 2 cut(s) 903, 1121
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 383, 455, 703
BmuI ACTGGG 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 2 cut(s) 927, 1532
BpuEI CTTGAG 3 cut(s) 195, 498, 1450
BsaBI GATNNNNATC 1 cut(s) 840
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 2 cut(s) 862, 1183
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 4 cut(s) 769, 898, 1071, 1555
Bse118I RCCGGY 3 cut(s) 1071, 1098, 1294
Bse1I ACTGG 5 cut(s) 159, 1033, 1349, 1423, 1458
Bse3DI GCAATG 1 cut(s) 967
Bse8I GATNNNNATC 1 cut(s) 840
BseDI CCNNGG 2 cut(s) 862, 1183
BseGI GGATG 2 cut(s) 446, 841
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 4 cut(s) 769, 898, 1071, 1555
BseMI GCAATG 1 cut(s) 967
BseMII CTCAG 4 cut(s) 780, 941, 1430, 1546
BseNI ACTGG 5 cut(s) 159, 1033, 1349, 1423, 1458
BseSI GKGCMC 1 cut(s) 1235
BseXI GCAGC 3 cut(s) 245, 448, 1089
BseYI CCCAGC 1 cut(s) 1235
BsgI GTGCAG 1 cut(s) 1478
BshFI GGCC 5 cut(s) 202, 773, 904, 1098, 1110
BshNI GGYRCC 1 cut(s) 1119
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 3 cut(s) 1072, 1099, 1295
BslFI GGGAC 1 cut(s) 763
BslI CCNNNNNNNGG 4 cut(s) 769, 898, 1071, 1555
BsmAI GTCTC 1 cut(s) 1061
BsmFI GGGAC 1 cut(s) 763
BsmI GAATGC 2 cut(s) 1292, 1440
BsnI GGCC 5 cut(s) 202, 773, 904, 1098, 1110
Bso31I GGTCTC 1 cut(s) 1061
BsoBI CYCGRG 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 1235, 1259
Bsp143I GATC 4 cut(s) 244, 496, 604, 1558
Bsp19I CCATGG 1 cut(s) 1183
BspACI CCGC 4 cut(s) 230, 1239, 1322, 1549
BspANI GGCC 5 cut(s) 202, 773, 904, 1098, 1110
BspCNI CTCAG 4 cut(s) 781, 940, 1429, 1545
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 903, 1121
BspMI ACCTGC 2 cut(s) 396, 1131
BspPI GGATC 4 cut(s) 239, 491, 599, 1566
BspT107I GGYRCC 1 cut(s) 1119
BspTNI GGTCTC 1 cut(s) 1061
BsrDI GCAATG 1 cut(s) 967
BsrFI RCCGGY 3 cut(s) 1071, 1098, 1294
BsrI ACTGG 5 cut(s) 159, 1033, 1349, 1423, 1458
BssAI RCCGGY 3 cut(s) 1071, 1098, 1294
BssECI CCNNGG 2 cut(s) 862, 1183
BssMI GATC 4 cut(s) 244, 496, 604, 1558
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 862, 1183
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 1224
BstC8I GCNNGC 4 cut(s) 1096, 1100, 1255, 1292
BstDEI CTNAG 4 cut(s) 789, 927, 1416, 1532
BstDSI CCRYGG 1 cut(s) 1183
BstF5I GGATG 2 cut(s) 446, 841
BstKTI GATC 4 cut(s) 247, 499, 607, 1561
BstMAI GTCTC 1 cut(s) 1061
BstMBI GATC 4 cut(s) 244, 496, 604, 1558
BstMWI GCNNNNNNNGC 7 cut(s) 108, 239, 371, 431, 1091, 1224, 1280
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 1235
BstV1I GCAGC 3 cut(s) 245, 448, 1089
BstX2I RGATCY 2 cut(s) 496, 604
BstYI RGATCY 2 cut(s) 496, 604
BsuI GTATCC 1 cut(s) 1201
BsuRI GGCC 5 cut(s) 202, 773, 904, 1098, 1110
BtgI CCRYGG 1 cut(s) 1183
BtsCI GGATG 2 cut(s) 446, 841
BtsIMutI CAGTG 3 cut(s) 745, 786, 1336
BveI ACCTGC 2 cut(s) 396, 1131
Cac8I GCNNGC 4 cut(s) 1096, 1100, 1255, 1292
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 667
Cfr10I RCCGGY 3 cut(s) 1071, 1098, 1294
Cfr13I GGNCC 5 cut(s) 518, 626, 696, 902, 1481
CseI GACGC 1 cut(s) 100
Csp6I GTAC 9 cut(s) 152, 159, 290, 470, 760, 953, 1120, 1367, 1426
CviAII CATG 8 cut(s) 129, 135, 491, 668, 782, 893, 1106, 1184
CviQI GTAC 9 cut(s) 152, 159, 290, 470, 760, 953, 1120, 1367, 1426
DdeI CTNAG 4 cut(s) 789, 927, 1416, 1532
DpnI GATC 4 cut(s) 246, 498, 606, 1560
DpnII GATC 4 cut(s) 244, 496, 604, 1558
DraI TTTAAA 1 cut(s) 1131
DriI GACNNNNNGTC 2 cut(s) 790, 1348
EaeI YGGCCR 2 cut(s) 771, 1108
Eam1104I CTCTTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 2 cut(s) 790, 1348
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 1311
Eco130I CCWWGG 2 cut(s) 862, 1183
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 1259
Eco31I GGTCTC 1 cut(s) 1061
Eco47I GGWCC 4 cut(s) 518, 626, 696, 1481
Eco88I CYCGRG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 862, 1183
EcoT22I ATGCAT 1 cut(s) 1440
EcoT38I GRGCYC 1 cut(s) 1259
ErhI CCWWGG 2 cut(s) 862, 1183
FaeI CATG 8 cut(s) 132, 138, 494, 671, 785, 896, 1109, 1187
FalI AAGNNNNNCTT 2 cut(s) 1211, 1243
FaqI GGGAC 1 cut(s) 763
FatI CATG 8 cut(s) 128, 134, 490, 667, 781, 892, 1105, 1183
Fnu4HI GCNGC 4 cut(s) 231, 234, 462, 1103
FokI GGATG 2 cut(s) 433, 828
FriOI GRGCYC 1 cut(s) 1259
Fsp4HI GCNGC 4 cut(s) 231, 234, 462, 1103
FspBI CTAG 3 cut(s) 80, 179, 204
GluI GCNGC 4 cut(s) 231, 234, 462, 1103
GsaI CCCAGC 1 cut(s) 1239
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 5 cut(s) 202, 773, 904, 1098, 1110
HapII CCGG 3 cut(s) 1072, 1099, 1295
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 8 cut(s) 132, 138, 494, 671, 785, 896, 1109, 1187
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 7 cut(s) 76, 269, 776, 791, 853, 981, 1199
HpaII CCGG 3 cut(s) 1072, 1099, 1295
HphI GGTGA 4 cut(s) 27, 365, 757, 1486
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 8 cut(s) 274, 379, 480, 835, 976, 1025, 1309, 1419
Hpy188III TCNNGA 6 cut(s) 500, 580, 596, 668, 1010, 1534
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 7 cut(s) 593, 651, 971, 999, 1096, 1369, 1494
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 3 cut(s) 104, 150, 1500
HpyF10VI GCNNNNNNNGC 7 cut(s) 108, 239, 371, 431, 1091, 1224, 1280
HpyF3I CTNAG 4 cut(s) 789, 927, 1416, 1532
HpySE526I ACGT 3 cut(s) 104, 150, 1500
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 8 cut(s) 132, 138, 494, 671, 785, 896, 1109, 1187
KpnI GGTACC 1 cut(s) 1123
KroI GCCGGC 1 cut(s) 1098
KroNI GCCGGC 1 cut(s) 1100
Kzo9I GATC 4 cut(s) 244, 496, 604, 1558
Lsp1109I GCAGC 3 cut(s) 245, 448, 1089
LweI GCATC 3 cut(s) 383, 455, 703
MaeI CTAG 3 cut(s) 80, 179, 204
MaeII ACGT 3 cut(s) 104, 150, 1500
MaeIII GTNAC 4 cut(s) 112, 146, 554, 1241
MalI GATC 4 cut(s) 246, 498, 606, 1560
MboI GATC 4 cut(s) 244, 496, 604, 1558
MboII GAAGA 9 cut(s) 42, 51, 54, 57, 162, 287, 506, 722, 906
MflI RGATCY 2 cut(s) 496, 604
MhlI GDGCHC 2 cut(s) 1235, 1259
MlsI TGGCCA 1 cut(s) 1110
MluCI AATT 6 cut(s) 309, 347, 357, 1077, 1263, 1312
MluNI TGGCCA 1 cut(s) 1110
MlyI GAGTC 3 cut(s) 785, 800, 1208
Mox20I TGGCCA 1 cut(s) 1110
Mph1103I ATGCAT 1 cut(s) 1440
MroNI GCCGGC 1 cut(s) 1098
MscI TGGCCA 1 cut(s) 1110
MseI TTAA 3 cut(s) 360, 1130, 1208
MslI CAYNNNNRTG 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 1110
MspA1I CMGCKG 1 cut(s) 1239
MspI CCGG 3 cut(s) 1072, 1099, 1295
Mva1269I GAATGC 2 cut(s) 1292, 1440
MwoI GCNNNNNNNGC 7 cut(s) 108, 239, 371, 431, 1091, 1224, 1280
NaeI GCCGGC 1 cut(s) 1100
NcoI CCATGG 1 cut(s) 1183
NdeII GATC 4 cut(s) 244, 496, 604, 1558
NgoMIV GCCGGC 1 cut(s) 1098
NlaIII CATG 8 cut(s) 132, 138, 494, 671, 785, 896, 1109, 1187
NlaIV GGNNCC 2 cut(s) 903, 1121
NmeAIII GCCGAG 1 cut(s) 799
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 1440
PaeR7I CTCGAG 1 cut(s) 465
PagI TCATGA 1 cut(s) 667
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 1287
PctI GAATGC 2 cut(s) 1292, 1440
PdiI GCCGGC 1 cut(s) 1100
PfeI GAWTC 4 cut(s) 76, 269, 853, 981
PflFI GACNNNGTC 1 cut(s) 818
PkrI GCNGC 4 cut(s) 232, 235, 463, 1104
PleI GAGTC 3 cut(s) 784, 799, 1207
PpsI GAGTC 3 cut(s) 784, 799, 1207
PshBI ATTAAT 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 1235
PspN4I GGNNCC 2 cut(s) 903, 1121
PspPI GGNCC 5 cut(s) 518, 626, 696, 902, 1481
PspXI VCTCGAGB 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 2 cut(s) 496, 604
PsyI GACNNNGTC 1 cut(s) 818
RsaI GTAC 9 cut(s) 153, 160, 291, 471, 761, 954, 1121, 1368, 1427
RsaNI GTAC 9 cut(s) 152, 159, 290, 470, 760, 953, 1120, 1367, 1426
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 3 cut(s) 360, 1130, 1208
SatI GCNGC 4 cut(s) 231, 234, 462, 1103
Sau3AI GATC 4 cut(s) 244, 496, 604, 1558
Sau96I GGNCC 5 cut(s) 518, 626, 696, 902, 1481
ScaI AGTACT 1 cut(s) 1427
SchI GAGTC 3 cut(s) 785, 800, 1208
SduI GDGCHC 2 cut(s) 1235, 1259
SfaNI GCATC 3 cut(s) 383, 455, 703
SfcI CTRYAG 1 cut(s) 648
Sfr274I CTCGAG 1 cut(s) 465
SinI GGWCC 4 cut(s) 518, 626, 696, 1481
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 4 cut(s) 210, 465, 513, 1429
SmoI CTYRAG 4 cut(s) 210, 465, 513, 1429
Sse9I AATT 6 cut(s) 309, 347, 357, 1077, 1263, 1312
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 4 cut(s) 230, 1239, 1322, 1549
SspMI CTAG 3 cut(s) 80, 179, 204
StuI AGGCCT 1 cut(s) 202
StyI CCWWGG 2 cut(s) 862, 1183
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 3 cut(s) 107, 153, 1503
TaqI TCGA 2 cut(s) 466, 1566
TasI AATT 6 cut(s) 309, 347, 357, 1077, 1263, 1312
TatI WGTACW 3 cut(s) 289, 1366, 1425
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 76, 269, 853, 981
Tru1I TTAA 3 cut(s) 360, 1130, 1208
Tru9I TTAA 3 cut(s) 360, 1130, 1208
TscAI CASTG 3 cut(s) 745, 793, 1336
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 233, 461, 1102
Tsp45I GTSAC 1 cut(s) 112
TspRI CASTG 3 cut(s) 745, 793, 1336
Tth111I GACNNNGTC 1 cut(s) 818
VpaK11BI GGWCC 4 cut(s) 518, 626, 696, 1481
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 2 cut(s) 1025, 1181
XhoI CTCGAG 1 cut(s) 465
XspI CTAG 3 cut(s) 80, 179, 204
ZrmI AGTACT 1 cut(s) 1427
Zsp2I ATGCAT 1 cut(s) 1440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.