pycom15g12470

glycosyltransferase At5g03795

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
8525773 .. 8526141
369 bp
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UTR
Exon/CDS
Intron
pycom15g12470.1

Sequence Viewer

Length: 369 bp
ATGCTCAAGAGTAGCAAGTTTTGCTTATGCCCTAGCGGGTACGAAGTGGCAAGTCCAAGAGTGGTGGAAGCAATTTATGCCGAGTGTGTGCCAGTGTTGATTTCGGATGGTTACGTTCCTCCATTCAGCGATGTTTTGAACTGGAAGTCATTTTCTCTACAAGTTCCGGTCAAGAATATATCCGACATCAAGACCATATTGACAGCCATATCGAGCAGACAGTACCTCCGAATGCAGAGGAGGGTGAAACAAGTGCAACGACATTTTTTGGTGAATGGACCCCCGAAGAGATACGATGCTTTCCACATGATTGTTCACTCCATCTGGCTCAGACGCTTAAACATTCGCATTCAAGATGTATTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

9.89

Isoelectric Point (pI)

65.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 1 - 69 2.2e-26 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AfaI GTAC 2 cut(s) 41, 224
AgsI TTSAA 2 cut(s) 139, 353
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 3 cut(s) 256, 283, 355
AvaII GGWCC 1 cut(s) 278
BccI CCATC 2 cut(s) 101, 329
BfaI CTAG 1 cut(s) 33
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 280
BmsI GCATC 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bse1I ACTGG 2 cut(s) 92, 146
BseGI GGATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 2 cut(s) 92, 146
BseRI GAGGAG 1 cut(s) 253
BsiSI CCGG 1 cut(s) 167
BsmI GAATGC 2 cut(s) 237, 348
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 92, 146
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 21, 77
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 21, 77
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 342
Csp6I GTAC 2 cut(s) 40, 223
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 1 cut(s) 307
CviJI RGCY 2 cut(s) 206, 328
CviKI_1 RGCY 2 cut(s) 206, 328
CviQI GTAC 2 cut(s) 40, 223
DdeI CTNAG 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 278
FaeI CATG 1 cut(s) 310
FaiI YATR 6 cut(s) 28, 78, 179, 197, 209, 308
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 1 cut(s) 306
FauI CCCGC 1 cut(s) 29
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 33
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 342
Hin1II CATG 1 cut(s) 310
HpaII CCGG 1 cut(s) 167
HphI GGTGA 3 cut(s) 256, 283, 355
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 106, 184, 230, 332
Hpy188III TCNNGA 4 cut(s) 7, 172, 190, 353
Hpy8I GTNNAC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 235, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 77
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 310
LpnPI CCDG 4 cut(s) 105, 127, 180, 310
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 110
MboII GAAGA 1 cut(s) 298
MluCI AATT 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 129, 231, 234, 236
MseI TTAA 1 cut(s) 338
MspI CCGG 1 cut(s) 167
Mva1269I GAATGC 2 cut(s) 237, 348
MwoI GCNNNNNNNGC 2 cut(s) 21, 77
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 106
PctI GAATGC 2 cut(s) 237, 348
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 278
RsaI GTAC 2 cut(s) 41, 224
RsaNI GTAC 2 cut(s) 40, 223
SaqAI TTAA 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 278
SetI ASST 3 cut(s) 117, 228, 368
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 212
TasI AATT 1 cut(s) 72
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 99
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 278
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.