Rh3AG169700

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000727
Physical Location & Seq
Forward (+)
15708038 .. 15711437
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG169700.1

Sequence Viewer

Length: 552 bp
ATGATGGCGTATAGTAACAAGAAACCGGGCGGCGGCGGCGGTGGTGCTGGTAGTACTGGTTCATATGCATGTTGGTCTTATTCGTCTTACTCAGCAATTTTGGTGCTTATTGTTCCATTGGTTGTGGTTTTCGGGTTGATTTCGCTGTTGAGTCCGAATTCCTCCAATTGGGTTTTCATATCCAACTACTACTTAACCGGCCCTTCTTCGAATACGAGTACCACAAACTCGTCGGAGATCGGAGCTTCACACGACAACATTTTGGGCTTGAGGTCGACGGTGGTTGTTATGGATATGCACAGTAGTACTATAGAGGAAGTTCACTCAGATGATTATGTACAGAATCGGTCTGCTTCTCCGCCGCTCGCCATAGAAGAAGCGACACCACCACCACTTCAACAACCGGTGAGACCTTTTTCGTCTTGTTATTTACTTCATGCATTTGTTTTGAGTTATTCGTTGCTTGTTTTTCCAATCTCTTTGATTCTTTTGGTGTTTTACAGTCAGAAGTCCAGAAAACTCTCTCTCTTTTTGGGTAACGTCTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

183

Amino Acids

19.73

Weight (kDa)

6.39

Isoelectric Point (pI)

69.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 275
AciI CCGC 6 cut(s) 30, 33, 36, 39, 359, 362
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 4 cut(s) 55, 220, 307, 339
AfiI CCNNNNNNNGG 2 cut(s) 32, 168
AgeI ACCGGT 1 cut(s) 403
AgsI TTSAA 1 cut(s) 398
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 403
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 209
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 403
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 4 cut(s) 31, 34, 37, 362
BlsI GCNGC 4 cut(s) 32, 35, 38, 363
BmcAI AGTACT 2 cut(s) 55, 307
Bme1390I CCNGG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 168
Bse118I RCCGGY 2 cut(s) 197, 403
Bse1I ACTGG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 32, 168
BseMII CTCAG 2 cut(s) 105, 339
BseNI ACTGG 1 cut(s) 61
BshFI GGCC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 403
BsiSI CCGG 3 cut(s) 26, 198, 404
BslI CCNNNNNNNGG 2 cut(s) 32, 168
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 6 cut(s) 30, 33, 36, 39, 359, 362
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 104, 338
BspT104I TTCGAA 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 403
BsrBI CCGCTC 1 cut(s) 364
BsrFI RCCGGY 2 cut(s) 197, 403
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 2 cut(s) 197, 403
BssMI GATC 1 cut(s) 237
Bst4CI ACNGT 3 cut(s) 280, 302, 503
BstAUI TGTACA 1 cut(s) 337
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 91, 325
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 309
BsuRI GGCC 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 366
Cfr10I RCCGGY 2 cut(s) 197, 403
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 4 cut(s) 54, 219, 306, 338
CspAI ACCGGT 1 cut(s) 403
CviAII CATG 2 cut(s) 69, 437
CviJI RGCY 3 cut(s) 201, 245, 267
CviKI_1 RGCY 3 cut(s) 201, 245, 267
CviQI GTAC 4 cut(s) 54, 219, 306, 338
DdeI CTNAG 2 cut(s) 91, 325
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 157
EcoT22I ATGCAT 2 cut(s) 70, 442
FaeI CATG 2 cut(s) 72, 440
FatI CATG 2 cut(s) 68, 436
FauNDI CATATG 1 cut(s) 64
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 4 cut(s) 31, 34, 37, 362
Fsp4HI GCNGC 4 cut(s) 31, 34, 37, 362
GluI GCNGC 4 cut(s) 31, 34, 37, 362
HaeIII GGCC 1 cut(s) 201
HapII CCGG 3 cut(s) 26, 198, 404
Hin1II CATG 2 cut(s) 72, 440
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 3 cut(s) 151, 343, 484
HpaII CCGG 3 cut(s) 26, 198, 404
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 2 cut(s) 276, 322
Hpy188I TCNGA 5 cut(s) 156, 235, 242, 328, 507
Hpy188III TCNNGA 1 cut(s) 513
Hpy8I GTNNAC 2 cut(s) 276, 322
Hpy99I CGWCG 2 cut(s) 235, 280
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 3 cut(s) 280, 302, 503
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 3 cut(s) 68, 298, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 91, 325
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 2 cut(s) 72, 440
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 33, 39, 42, 211, 417, 526
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 14, 536
MalI GATC 1 cut(s) 239
MbiI CCGCTC 1 cut(s) 364
MboI GATC 1 cut(s) 237
MboII GAAGA 2 cut(s) 198, 386
MfeI CAATTG 1 cut(s) 166
MluCI AATT 4 cut(s) 96, 157, 166, 547
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 207, 213
MnlI CCTC 3 cut(s) 172, 264, 307
Mph1103I ATGCAT 2 cut(s) 70, 442
MseI TTAA 3 cut(s) 194, 546, 550
MslI CAYNNNNRTG 2 cut(s) 67, 327
MspI CCGG 3 cut(s) 26, 198, 404
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 64
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 72, 440
NsiI ATGCAT 2 cut(s) 70, 442
NspI RCATGY 1 cut(s) 72
NspV TTCGAA 1 cut(s) 209
PacI TTAATTAA 1 cut(s) 550
PfeI GAWTC 2 cut(s) 343, 484
PinAI ACCGGT 1 cut(s) 403
PkrI GCNGC 4 cut(s) 32, 35, 38, 363
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 200
PsrI GAACNNNNNNTAC 2 cut(s) 43, 75
RsaI GTAC 4 cut(s) 55, 220, 307, 339
RsaNI GTAC 4 cut(s) 54, 219, 306, 338
RseI CAYNNNNRTG 2 cut(s) 67, 327
SalI GTCGAC 1 cut(s) 274
SaqAI TTAA 3 cut(s) 194, 546, 550
SatI GCNGC 4 cut(s) 31, 34, 37, 362
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 200
ScaI AGTACT 2 cut(s) 55, 307
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 27
SetI ASST 4 cut(s) 247, 275, 415, 543
SfcI CTRYAG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 67, 327
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 4 cut(s) 96, 157, 166, 547
SsiI CCGC 6 cut(s) 30, 33, 36, 39, 359, 362
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 280, 302, 503
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 209, 275
TaqII GACCGA 1 cut(s) 336
TasI AATT 4 cut(s) 96, 157, 166, 547
TatI WGTACW 3 cut(s) 53, 305, 337
TauI GCSGC 4 cut(s) 33, 36, 39, 364
TfiI GAWTC 2 cut(s) 343, 484
Tru1I TTAA 3 cut(s) 194, 546, 550
Tru9I TTAA 3 cut(s) 194, 546, 550
TspDTI ATGAA 3 cut(s) 51, 166, 425
XapI RAATTY 1 cut(s) 157
XceI RCATGY 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 275
ZrmI AGTACT 2 cut(s) 55, 307
Zsp2I ATGCAT 2 cut(s) 70, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.