Rw2G024400

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000727
Physical Location & Seq
Reverse (-)
36041995 .. 36044917
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024400.1

Sequence Viewer

Length: 1554 bp
ATGAGGGCTGCTCGTACTTACAGACCAGTTTTTTCATTATCCTGGTTTCTAGTAGTGTTACTGGTAATACCTTTGCTGGTGTTGCTGTTAATCTTTCTGATACAGCCTCTGAGTTCAAGCTCTTCATCATCAACTGCAACTTGGATAGTTGATAATTCTAGTACTTCTGGAAATTTTAGCTACTCTCTAGCTTTAACTGCAGCTCAAGAATGGCCTCAACCTCCAGCTGAAGCTCCACTTACTAGTTTTTTATATGGTAGTCCAAGTCCTGCTCCTGCCCCTCAAATATCAACTGGGGCTATACAAGTTGGTGGTTCTAGAAGAGTAAAATCATGGTGGAGCATGAAGCTAGATGAGCTGGAAGCAAGTTTGGGCAAAGCAAGGTCTTCCATAAGAGAAGCAGCTGGTACATCACTAGTACGACTTAGGAACAAGATCAATTCGACATCAAAAACAGTGCAACTAGTACATGACGACGACCCCGACTATGTTCCTCACGGCCGCATATATCGGAACGCCCACGCCTTTCATAGGAGCTACCTATTAATGGAGAAGCTGTTCAAGATATACGTATACGAAGAAGGAGAGGTCCCACTGTTTCATAGTGGTCCATGCAAGAGCATATATTCCTCAGAAGGAAGGTTCATTAATGAAATGGAGATGGGCAAATTGTACAGAACAAAAGACCCAGATGAAGCACACGTTTACTTCATTCCAGTAAGTGTGGCCAATCTGGTTCAGTACCTGTATGTCCCCGATTCAAAAGATCTAGATCCGATGAAGCGAGCCACCGTCGACTACGTTAAAGTCATTGCTGATAGGCATCCTTTCTGGAATAGAAGCCTTGGTGCTGATCATTTCATGCTTTCATGTCATGACTGGGGGCCAATGACGTCATCCTTTGTTCCAAATTTGTTCCACAAGTCCATTAGGGTTCTTTGCAATGCCAATACTTCCGAAGGATTTAATCCATCAAAAGATGTGTCGTTTCCCGAAATTAATCTTCTAACAGGTGAAATCTCAAGTCTAGGTGGTCAGCCTCCATCGACTCGAACTATCCTCGCCTTTTTCGCCGGTCATCTTCATGGCCACATTAGGTACCTCCTTTTAAACGAATGGAAAGGCAAAGACCAAGATGTCCAAGTCTATGAGACGCTCCCAAAGAAAGTGTCCTATGAAAAAAAGTTGAAAAGTAGCAAGTTTTGCTTGTGCCCAAGTGGGTATGAAGTGGCAAGTCCAAGAGTGGTGGAAGCAATCTATGCCGAGTGTGTTCCGGTGTTGATTTCAGATGCTTATGTCCCACCTTTCAGTGATGTTTTGAATTGGAAGTCATTTTCTGTTCAAATAGATGTGAAGAACATATCCGATATCAAGAACATATTGATGGGGATATCTCATAGGCAGTACCTAAGAATGCAAAGGAATGTGAAACAAGTGCAACGACATTTTGTGGTGAATGGACCTCCTAGGAGATATGATGTTTTCCACATGATTGTTCACTCTATTTGGCTTAGAAGGTTAAATATTCGCGTTCATGATTTTCGGAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

517

Amino Acids

58.7

Weight (kDa)

9.23

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 184 - 462 5.6e-61 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1136
AatII GACGTC 1 cut(s) 896
Acc65I GGTACC 1 cut(s) 1098
AccB1I GGYRCC 1 cut(s) 1098
AccI GTMKAC 2 cut(s) 573, 795
AccII CGCG 1 cut(s) 1530
AciI CCGC 1 cut(s) 502
AclWI GGATC 1 cut(s) 767
AcoI YGGCCR 3 cut(s) 499, 726, 1087
AcsI RAATTY 2 cut(s) 172, 910
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 893
AfaI GTAC 9 cut(s) 16, 163, 409, 420, 468, 674, 743, 1100, 1406
AfiI CCNNNNNNNGG 2 cut(s) 531, 547
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 6 cut(s) 117, 562, 762, 1189, 1321, 1343
AhlI ACTAGT 3 cut(s) 242, 415, 463
AjnI CCWGG 1 cut(s) 41
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
Alw26I GTCTC 1 cut(s) 1145
AlwI GGATC 1 cut(s) 767
AlwNI CAGNNNCTG 2 cut(s) 109, 745
AoxI GGCC 5 cut(s) 212, 499, 726, 884, 1087
ApeKI GCWGC 3 cut(s) 8, 200, 401
ApoI RAATTY 2 cut(s) 172, 910
ArsI GACNNNNNNTTYG 4 cut(s) 968, 1000, 1154, 1186
AseI ATTAAT 3 cut(s) 545, 648, 999
Asp700I GAANNNNTTC 1 cut(s) 557
Asp718I GGTACC 1 cut(s) 1098
AspA2I CCTAGG 1 cut(s) 1466
AspS9I GGNCC 4 cut(s) 589, 608, 884, 1460
AsuHPI GGTGA 2 cut(s) 1025, 1465
AvaII GGWCC 3 cut(s) 589, 608, 1460
AvrII CCTAGG 1 cut(s) 1466
BaeGI GKGCMC 1 cut(s) 1214
BalI TGGCCA 2 cut(s) 728, 1089
BanI GGYRCC 1 cut(s) 1098
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 212, 413
BccI CCATC 4 cut(s) 655, 979, 1051, 1378
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 853
BcoDI GTCTC 1 cut(s) 1145
BcuI ACTAGT 3 cut(s) 242, 415, 463
BfmI CTRYAG 1 cut(s) 198
BglII AGATCT 1 cut(s) 766
BisI GCNGC 4 cut(s) 9, 201, 402, 502
BlnI CCTAGG 1 cut(s) 1466
BlsI GCNGC 4 cut(s) 10, 202, 403, 503
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 3 cut(s) 589, 608, 1460
BmgT120I GGNCC 4 cut(s) 589, 608, 884, 1460
BmiI GGNNCC 3 cut(s) 591, 885, 1100
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 2 cut(s) 303, 889
BmsI GCATC 2 cut(s) 832, 1279
BmuI ACTGGG 2 cut(s) 303, 889
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 189, 1006
BsaAI YACGTR 1 cut(s) 571
BsaBI GATNNNNATC 2 cut(s) 771, 822
BsaHI GRCGYC 1 cut(s) 893
BsaJI CCNNGG 2 cut(s) 844, 1466
BsaWI WCCGGW 1 cut(s) 1273
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 531, 547
Bse118I RCCGGY 1 cut(s) 1073
Bse1I ACTGG 5 cut(s) 26, 66, 298, 716, 884
Bse3DI GCAATG 2 cut(s) 810, 949
Bse8I GATNNNNATC 2 cut(s) 771, 822
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 844, 1466
BseGI GGATG 2 cut(s) 823, 896
BseJI GATNNNNATC 2 cut(s) 771, 822
BseLI CCNNNNNNNGG 2 cut(s) 531, 547
BseMI GCAATG 2 cut(s) 810, 949
BseMII CTCAG 2 cut(s) 101, 645
BseNI ACTGG 5 cut(s) 26, 66, 298, 716, 884
BseSI GKGCMC 1 cut(s) 1214
BseX3I CGGCCG 1 cut(s) 499
BseXI GCAGC 2 cut(s) 212, 413
Bsh1236I CGCG 1 cut(s) 1530
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 5 cut(s) 214, 501, 728, 886, 1089
BshNI GGYRCC 1 cut(s) 1098
BsiEI CGRYCG 1 cut(s) 502
BsiSI CCGG 2 cut(s) 1074, 1274
BslFI GGGAC 3 cut(s) 575, 737, 1283
BslI CCNNNNNNNGG 2 cut(s) 531, 547
BsmAI GTCTC 1 cut(s) 1145
BsmBI CGTCTC 1 cut(s) 1145
BsmFI GGGAC 3 cut(s) 575, 737, 1283
BsmI GAATGC 1 cut(s) 1419
BsnI GGCC 5 cut(s) 214, 501, 728, 886, 1089
Bsp1286I GDGCHC 1 cut(s) 1214
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 4 cut(s) 435, 766, 772, 853
BspACI CCGC 1 cut(s) 502
BspANI GGCC 5 cut(s) 214, 501, 728, 886, 1089
BspCNI CTCAG 2 cut(s) 102, 644
BspFNI CGCG 1 cut(s) 1530
BspHI TCATGA 2 cut(s) 874, 1534
BspLI GGNNCC 3 cut(s) 591, 885, 1100
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 767
BspQI GCTCTTC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 1098
BsrDI GCAATG 2 cut(s) 810, 949
BsrFI RCCGGY 1 cut(s) 1073
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 5 cut(s) 26, 66, 298, 716, 884
BssAI RCCGGY 1 cut(s) 1073
BssECI CCNNGG 2 cut(s) 844, 1466
BssMI GATC 4 cut(s) 435, 766, 772, 853
BssNAI GTATAC 1 cut(s) 574
BssNI GRCGYC 1 cut(s) 893
BssT1I CCWWGG 2 cut(s) 844, 1466
Bst1107I GTATAC 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 457, 597, 793
Bst6I CTCTTC 2 cut(s) 127, 316
BstACI GRCGYC 1 cut(s) 893
BstAPI GCANNNNNTGC 2 cut(s) 1203, 1259
BstAUI TGTACA 1 cut(s) 672
BstBAI YACGTR 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 786
BstDEI CTNAG 5 cut(s) 110, 425, 631, 1409, 1511
BstENI CCTNNNNNAGG 1 cut(s) 529
BstF5I GGATG 2 cut(s) 823, 896
BstFNI CGCG 1 cut(s) 1530
BstKTI GATC 4 cut(s) 438, 769, 775, 856
BstMAI GTCTC 1 cut(s) 1145
BstMBI GATC 4 cut(s) 435, 766, 772, 853
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 6 cut(s) 82, 197, 355, 1070, 1203, 1259
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 1214
BstSNI TACGTA 1 cut(s) 571
BstUI CGCG 1 cut(s) 1530
BstV1I GCAGC 2 cut(s) 212, 413
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 2 cut(s) 766, 772
BstYI RGATCY 2 cut(s) 766, 772
BstZ17I GTATAC 1 cut(s) 574
BstZI CGGCCG 1 cut(s) 499
BsuRI GGCC 5 cut(s) 214, 501, 728, 886, 1089
BtsCI GGATG 2 cut(s) 823, 896
BtsIMutI CAGTG 3 cut(s) 462, 593, 1315
Cac8I GCNNGC 1 cut(s) 786
CaiI CAGNNNCTG 2 cut(s) 109, 745
CciI TCATGA 2 cut(s) 874, 1534
Cfr10I RCCGGY 1 cut(s) 1073
Cfr13I GGNCC 4 cut(s) 589, 608, 884, 1460
CseI GACGC 1 cut(s) 1162
Csp6I GTAC 9 cut(s) 15, 162, 408, 419, 467, 673, 742, 1099, 1405
CspCI CAANNNNNGTGG 2 cut(s) 1227, 1262
CviQI GTAC 9 cut(s) 15, 162, 408, 419, 467, 673, 742, 1099, 1405
DdeI CTNAG 5 cut(s) 110, 425, 631, 1409, 1511
DpnI GATC 4 cut(s) 437, 768, 774, 855
DpnII GATC 4 cut(s) 435, 766, 772, 853
DraI TTTAAA 1 cut(s) 1110
DrdI GACNNNNNNGTC 1 cut(s) 1136
DseDI GACNNNNNNGTC 1 cut(s) 1136
EaeI YGGCCR 3 cut(s) 499, 726, 1087
EagI CGGCCG 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 127, 316
EarI CTCTTC 2 cut(s) 127, 316
EclXI CGGCCG 1 cut(s) 499
Eco105I TACGTA 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 844, 1466
Eco32I GATATC 2 cut(s) 1369, 1392
Eco47I GGWCC 3 cut(s) 589, 608, 1460
Eco52I CGGCCG 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 249
EcoNI CCTNNNNNAGG 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 41
EcoRV GATATC 2 cut(s) 1369, 1392
EcoT14I CCWWGG 2 cut(s) 844, 1466
ErhI CCWWGG 2 cut(s) 844, 1466
Esp3I CGTCTC 1 cut(s) 1145
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 1190, 1222
FaqI GGGAC 3 cut(s) 575, 737, 1283
FbaI TGATCA 1 cut(s) 853
FblI GTMKAC 2 cut(s) 573, 795
Fnu4HI GCNGC 4 cut(s) 9, 201, 402, 502
FokI GGATG 2 cut(s) 810, 883
Fsp4HI GCNGC 4 cut(s) 9, 201, 402, 502
GluI GCNGC 4 cut(s) 9, 201, 402, 502
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 5 cut(s) 214, 501, 728, 886, 1089
HapII CCGG 2 cut(s) 1074, 1274
HgaI GACGC 1 cut(s) 1162
Hin1I GRCGYC 1 cut(s) 893
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HinfI GANTC 3 cut(s) 758, 1048, 1546
HpaII CCGG 2 cut(s) 1074, 1274
HphI GGTGA 2 cut(s) 1025, 1465
Hpy166II GTNNAC 4 cut(s) 574, 706, 796, 1498
Hpy188I TCNGA 9 cut(s) 99, 111, 513, 634, 777, 958, 1288, 1366, 1545
Hpy8I GTNNAC 4 cut(s) 574, 706, 796, 1498
Hpy99I CGWCG 2 cut(s) 479, 797
HpyAV CCTTC 5 cut(s) 575, 629, 633, 953, 1509
HpyCH4III ACNGT 3 cut(s) 457, 597, 793
HpyCH4IV ACGT 4 cut(s) 570, 702, 801, 893
HpyCH4V TGCA 7 cut(s) 137, 200, 460, 615, 942, 1417, 1438
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 197, 355, 1070, 1203, 1259
HpyF3I CTNAG 5 cut(s) 110, 425, 631, 1409, 1511
HpySE526I ACGT 4 cut(s) 570, 702, 801, 893
Hsp92I GRCGYC 1 cut(s) 893
KpnI GGTACC 1 cut(s) 1102
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 4 cut(s) 435, 766, 772, 853
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 5 cut(s) 238, 277, 339, 534, 1161
Lsp1109I GCAGC 2 cut(s) 212, 413
LweI GCATC 2 cut(s) 832, 1279
MaeII ACGT 4 cut(s) 570, 702, 801, 893
MaeIII GTNAC 1 cut(s) 57
MalI GATC 4 cut(s) 437, 768, 774, 855
MboI GATC 4 cut(s) 435, 766, 772, 853
MboII GAAGA 7 cut(s) 114, 333, 378, 590, 995, 1073, 1366
MflI RGATCY 2 cut(s) 766, 772
MhlI GDGCHC 1 cut(s) 1214
MlsI TGGCCA 2 cut(s) 728, 1089
MluCI AATT 7 cut(s) 154, 172, 439, 668, 910, 996, 1321
MluNI TGGCCA 2 cut(s) 728, 1089
MlyI GAGTC 1 cut(s) 1042
Mox20I TGGCCA 2 cut(s) 728, 1089
MroXI GAANNNNTTC 1 cut(s) 557
MscI TGGCCA 2 cut(s) 728, 1089
MseI TTAA 9 cut(s) 89, 194, 545, 648, 804, 966, 999, 1109, 1520
MslI CAYNNNNRTG 2 cut(s) 1083, 1382
Msp20I TGGCCA 2 cut(s) 728, 1089
MspA1I CMGCKG 2 cut(s) 227, 404
MspI CCGG 2 cut(s) 1074, 1274
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 1419
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 1530
MwoI GCNNNNNNNGC 6 cut(s) 82, 197, 355, 1070, 1203, 1259
NdeII GATC 4 cut(s) 435, 766, 772, 853
NlaIV GGNNCC 3 cut(s) 591, 885, 1100
NmeAIII GCCGAG 1 cut(s) 1288
PagI TCATGA 2 cut(s) 874, 1534
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PctI GAATGC 1 cut(s) 1419
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 2 cut(s) 758, 1546
PkrI GCNGC 4 cut(s) 10, 202, 403, 503
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Ppu21I YACGTR 1 cut(s) 571
PpuMI RGGWCCY 1 cut(s) 589
PshBI ATTAAT 3 cut(s) 545, 648, 999
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 591, 885, 1100
PspPI GGNCC 4 cut(s) 589, 608, 884, 1460
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 2 cut(s) 109, 745
PsuI RGATCY 2 cut(s) 766, 772
PvuII CAGCTG 2 cut(s) 227, 404
RsaI GTAC 9 cut(s) 16, 163, 409, 420, 468, 674, 743, 1100, 1406
RsaNI GTAC 9 cut(s) 15, 162, 408, 419, 467, 673, 742, 1099, 1405
RseI CAYNNNNRTG 2 cut(s) 1083, 1382
SalI GTCGAC 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 9 cut(s) 89, 194, 545, 648, 804, 966, 999, 1109, 1520
SatI GCNGC 4 cut(s) 9, 201, 402, 502
Sau3AI GATC 4 cut(s) 435, 766, 772, 853
Sau96I GGNCC 4 cut(s) 589, 608, 884, 1460
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 1 cut(s) 1042
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 1214
SfaNI GCATC 2 cut(s) 832, 1279
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 3 cut(s) 589, 608, 1460
SmiMI CAYNNNNRTG 2 cut(s) 1083, 1382
SmlI CTYRAG 2 cut(s) 204, 1021
SmoI CTYRAG 2 cut(s) 204, 1021
SnaBI TACGTA 1 cut(s) 571
SpeI ACTAGT 3 cut(s) 242, 415, 463
Sse9I AATT 7 cut(s) 154, 172, 439, 668, 910, 996, 1321
SsiI CCGC 1 cut(s) 502
SspI AATATT 1 cut(s) 1525
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 2 cut(s) 844, 1466
TaaI ACNGT 3 cut(s) 457, 597, 793
TaiI ACGT 4 cut(s) 573, 705, 804, 896
TaqI TCGA 4 cut(s) 443, 795, 1046, 1051
TasI AATT 7 cut(s) 154, 172, 439, 668, 910, 996, 1321
TatI WGTACW 3 cut(s) 161, 466, 672
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 2 cut(s) 758, 1546
Tru1I TTAA 9 cut(s) 89, 194, 545, 648, 804, 966, 999, 1109, 1520
Tru9I TTAA 9 cut(s) 89, 194, 545, 648, 804, 966, 999, 1109, 1520
TscAI CASTG 3 cut(s) 462, 600, 1315
TseI GCWGC 3 cut(s) 8, 200, 401
TspRI CASTG 3 cut(s) 462, 600, 1315
VpaK11BI GGWCC 3 cut(s) 589, 608, 1460
VspI ATTAAT 3 cut(s) 545, 648, 999
XagI CCTNNNNNAGG 1 cut(s) 529
XapI RAATTY 2 cut(s) 172, 910
XbaI TCTAGA 2 cut(s) 317, 769
XmaJI CCTAGG 1 cut(s) 1466
XmiI GTMKAC 2 cut(s) 573, 795
XmnI GAANNNNTTC 1 cut(s) 557
ZraI GACGTC 1 cut(s) 894
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.