FvH4_2g02351

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000727
Physical Location & Seq
Reverse (-)
1928008 .. 1928768
761 bp
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UTR
Exon/CDS
Intron
FvH4_2g02351.t1

Sequence Viewer

Length: 657 bp
ATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGTTTACCTTCGTAGAAACTTGATTCGGGTGCTATGCAATGCGAACACATCTGGAGGCTTCAATCCTTCTAGAGATGTGTCTTTTCCGGAGATCAACCTTCCAAATGGAAAAACACATGGTTTAATCGGTGGACTTTCACCAAGGGTAAGAACTGTGCTAGCGTTTTTTGCAGGAGGACTTCATGGCCCTATTAGACTTCTATTGTTGGAGTTGTGGGAGAACAAAGATGAGGACATGATGGTGCACCAGTACCTTCCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGATTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCCGTGCTCATCTCAGATCATTATGTAGCCCCGTTTTGTGATGTTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATCTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGATTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGGTTTATATGGCTCAAAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

219

Amino Acids

24.95

Weight (kDa)

9.37

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 1 - 178 1.3e-37 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 130
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 19, 304
AgsI TTSAA 6 cut(s) 36, 106, 368, 485, 575, 598
Alw21I GWGCWC 2 cut(s) 291, 423
Alw44I GTGCAC 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 2 cut(s) 23, 229
ApaLI GTGCAC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 23, 230
AsuHPI GGTGA 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 616
Bbv12I GWGCWC 2 cut(s) 291, 423
BccI CCATC 1 cut(s) 277
BciVI GTATCC 1 cut(s) 513
BfaI CTAG 3 cut(s) 114, 203, 375
BfuI GTATCC 1 cut(s) 513
BmgT120I GGNCC 2 cut(s) 23, 230
BmiI GGNNCC 1 cut(s) 24
BmtI GCTAGC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 616
BplI GAGNNNNNCTC 2 cut(s) 584, 616
BpmI CTGGAG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 185, 380
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 304
Bse1I ACTGG 3 cut(s) 292, 409, 470
Bse3DI GCAATG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 185, 380
BseLI CCNNNNNNNGG 2 cut(s) 19, 304
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 3 cut(s) 292, 409, 470
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 291
BshFI GGCC 2 cut(s) 25, 231
BsiHKAI GWGCWC 2 cut(s) 291, 423
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 19, 304
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 2 cut(s) 25, 231
Bsp1286I GDGCHC 2 cut(s) 291, 423
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 2 cut(s) 135, 430
BspANI GGCC 2 cut(s) 25, 231
BspCNI CTCAG 1 cut(s) 440
BspEI TCCGGA 1 cut(s) 130
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 24
BspOI GCTAGC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 3 cut(s) 292, 409, 470
BssECI CCNNGG 2 cut(s) 185, 380
BssMI GATC 2 cut(s) 135, 430
BssT1I CCWWGG 2 cut(s) 185, 380
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 10, 204
BstDEI CTNAG 2 cut(s) 427, 551
BstENI CCTNNNNNAGG 1 cut(s) 302
BstKTI GATC 2 cut(s) 138, 433
BstMBI GATC 2 cut(s) 135, 430
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 616
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 2 cut(s) 25, 231
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 2 cut(s) 10, 204
CciI TCATGA 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 23, 230
Csp6I GTAC 1 cut(s) 295
CviAII CATG 6 cut(s) 14, 161, 227, 280, 526, 631
CviJI RGCY 7 cut(s) 25, 102, 231, 408, 443, 543, 644
CviKI_1 RGCY 7 cut(s) 25, 102, 231, 408, 443, 543, 644
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 427, 551
DpnI GATC 2 cut(s) 137, 432
DpnII GATC 2 cut(s) 135, 430
Eco130I CCWWGG 2 cut(s) 185, 380
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 185, 380
ErhI CCWWGG 2 cut(s) 185, 380
FaeI CATG 6 cut(s) 17, 164, 230, 283, 529, 634
FatI CATG 6 cut(s) 13, 160, 226, 279, 525, 630
FspBI CTAG 3 cut(s) 114, 203, 375
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 2 cut(s) 25, 231
HapII CCGG 1 cut(s) 131
Hin1II CATG 6 cut(s) 17, 164, 230, 283, 529, 634
HinfI GANTC 2 cut(s) 67, 571
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 3 cut(s) 49, 176, 289
Hpy188I TCNGA 3 cut(s) 430, 462, 513
Hpy188III TCNNGA 4 cut(s) 96, 114, 131, 526
Hpy8I GTNNAC 3 cut(s) 49, 176, 289
HpyAV CCTTC 5 cut(s) 62, 120, 152, 308, 558
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 81, 215, 289, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 427, 551
Hsp92II CATG 6 cut(s) 17, 164, 230, 283, 529, 634
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 135, 430
LpnPI CCDG 7 cut(s) 39, 81, 144, 201, 305, 390, 451
MaeI CTAG 3 cut(s) 114, 203, 375
MalI GATC 2 cut(s) 137, 432
MboI GATC 2 cut(s) 135, 430
MboII GAAGA 1 cut(s) 616
MhlI GDGCHC 2 cut(s) 291, 423
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 6 cut(s) 92, 212, 268, 385, 573, 615
MroI TCCGGA 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 3 cut(s) 167, 495, 655
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 561
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 2 cut(s) 135, 430
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 6 cut(s) 17, 164, 230, 283, 529, 634
NlaIV GGNNCC 1 cut(s) 24
PagI TCATGA 1 cut(s) 525
PctI GAATGC 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 67, 571
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 23, 230
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 3 cut(s) 167, 495, 655
Sau3AI GATC 2 cut(s) 135, 430
Sau96I GGNCC 2 cut(s) 23, 230
SduI GDGCHC 2 cut(s) 291, 423
SetI ASST 4 cut(s) 54, 144, 300, 569
SmiMI CAYNNNNRTG 1 cut(s) 284
SspMI CTAG 3 cut(s) 114, 203, 375
StyI CCWWGG 2 cut(s) 185, 380
TaaI ACNGT 1 cut(s) 199
TfiI GAWTC 2 cut(s) 67, 571
Tru1I TTAA 3 cut(s) 167, 495, 655
Tru9I TTAA 3 cut(s) 167, 495, 655
TscAI CASTG 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 409
VneI GTGCAC 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 3 cut(s) 114, 203, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.