Rw0G015450

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00708
OG0000727
Physical Location & Seq
Forward (+)
7092 .. 9550
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015450.1

Sequence Viewer

Length: 1470 bp
ATGAAGCCTCTCAACAACAAGCCATCTTTGTTTTCACCATTTTGGTCATCTTCTACTTCTTCTTCGGTTTTGATTCTAGTGCTTGTAGCTCTCATTTGCACGTTGGGCGTCACAAGTTCGTTTTCATGGTCATGGAGAGTTGGTAACGTACTGGGTACTGACTACTCTTCATCACTAGCTTTCCAACAAAAGCAAGGCCTAGTTCTCAATCCATCAAATGATTCAGAACCAAATGAAACAGTACATCTTCCCCCCAATCAAATTGTAGAGAAACAAGAGGTATTGTTGAATGATAAAGAATTTGGTGAAATTAATGCTACTATCTCTTTTGGCTGGAGTTCGGGCATCCATAAGAGAAGCTGCTCGAGTACGAAATCTGACTTCTACCATGAAGATCCAGACTATGTTCCTCAAGGTCCAATATATAGAAATGCAAATGCTTTTCACAGGAGTTACTTGGAGATGGAAAGGCTGTTCAAGATATATGTATATCAAGAAGGAGATCCACCCATATTTCATAATGGTCCTTGCAAGAGCATATATTCTACAGAGGGAAGGTTCATTCATGAAATGGAAATGGACAATACTTATAGGACCACAAACCCAGACGATGCCCTTGTTTATTTTCTTCCATTCAGTGTGGTGATGTTGGTTCAGTACCTCTATGTGGCCGAGTCCCATAACACTGAGTCCATTGGTCGTGCTGTGGTTGACTATGTCAATGTCATCTCTGATAAACACCCCTTTTGGAATCGAAGCCTTGGTGCTGACCACTTTATGCTTTCCTGCCATGATTGGGGGCCTCGCACATCTTCTTATGTTCCTCAGCTATACCACAAGTCCATAAGGGTACTATGCAATGCAAACACTTCGGAAGGATTCAATCCTTCCAAAGATGTGTCATTTCCAGAAATCCATCTCCGAACTGGCGAAACCAAAGGACTTCTCGGTGGTCTCTCCCCCTCTCGCCGGTCAATTCTCGCCTTCTTTGCAGGCCGGCTGCACGGCCACATAAGGTACCTGCTTTTAAATGAATGGAAAGAAAAAGACCAAGACGTGCAAGTTTATGACCAACTTCCCCATGGAGTATCCTATGAGTCAATGTTAAAGCAGAGCAAGTTCTGCTTGTGCCCCAGCGGTTACGAAGTGGCGAGCCCAAGAATTGTAGAAGCCATCTACGCAGAATGCGTGCCGGTGTTGATTTCAGATAACTATGTTCCACCGTTCAGTGATGTTTTAGACTGGAAGTCATTTTCAGTCCAAGTACAAGTGAAGGATATACCAAATATCAAAACAATACTAATGGGAATATCTCAGAGCCAGTACTTGAGAATGCATAGGAGAGTGAAACTGGTGCAGAGGCATTTTGTGGTGAATGGACCTTCCAAGAGATATGACGTTTTCAATATGATTGTTCATTCTATTTGGCTCAGGAGGTTGAATATCCGCATTGAGGATCAGGTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

489

Amino Acids

55.94

Weight (kDa)

6.66

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 156 - 435 6.3e-62 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1029
Acc65I GGTACC 1 cut(s) 1017
AccB1I GGYRCC 1 cut(s) 1017
AciI CCGC 2 cut(s) 1137, 1447
AclWI GGATC 3 cut(s) 389, 497, 1464
AcoI YGGCCR 2 cut(s) 669, 1006
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 9 cut(s) 150, 157, 243, 370, 659, 852, 1019, 1266, 1325
AfiI CCNNNNNNNGG 4 cut(s) 667, 796, 969, 1453
AgsI TTSAA 5 cut(s) 289, 478, 883, 1405, 1441
AhdI GACNNNNNGTC 1 cut(s) 1246
AjiI CACGTC 1 cut(s) 1057
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 4 cut(s) 89, 179, 360, 829
AluI AGCT 4 cut(s) 89, 179, 360, 829
Alw26I GTCTC 1 cut(s) 959
AlwI GGATC 3 cut(s) 389, 497, 1464
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 5 cut(s) 196, 669, 800, 994, 1006
ApeKI GCWGC 2 cut(s) 360, 1000
ApoI RAATTY 1 cut(s) 299
AseI ATTAAT 1 cut(s) 312
Asp718I GGTACC 1 cut(s) 1017
AspS9I GGNCC 5 cut(s) 416, 524, 594, 800, 1379
AsuHPI GGTGA 4 cut(s) 27, 317, 655, 1384
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 4 cut(s) 416, 524, 594, 1379
BaeGI GKGCMC 1 cut(s) 1133
BanI GGYRCC 1 cut(s) 1017
BanII GRGCYC 1 cut(s) 1157
BbvCI CCTCAGC 1 cut(s) 825
BbvI GCAGC 2 cut(s) 347, 987
BccI CCATC 5 cut(s) 31, 220, 457, 924, 1181
BceAI ACGGC 1 cut(s) 1021
BcgI CGANNNNNNTGC 2 cut(s) 852, 886
BciVI GTATCC 1 cut(s) 1099
BcoDI GTCTC 1 cut(s) 959
BfaI CTAG 3 cut(s) 77, 176, 200
BfmI CTRYAG 1 cut(s) 546
BfuAI ACCTGC 1 cut(s) 1029
BfuI GTATCC 1 cut(s) 1099
BisI GCNGC 2 cut(s) 361, 1001
BlsI GCNGC 2 cut(s) 362, 1002
BmcAI AGTACT 1 cut(s) 1325
Bme18I GGWCC 4 cut(s) 416, 524, 594, 1379
BmeRI GACNNNNNGTC 1 cut(s) 1246
BmeT110I CYCGRG 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 1057
BmgT120I GGNCC 5 cut(s) 416, 524, 594, 800, 1379
BmiI GGNNCC 2 cut(s) 801, 1019
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 354, 601
BmuI ACTGGG 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 355
Bpu10I CCTNAGC 2 cut(s) 825, 1430
BpuEI CTTGAG 2 cut(s) 396, 1348
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 2 cut(s) 760, 1081
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 4 cut(s) 667, 796, 969, 1453
Bse118I RCCGGY 3 cut(s) 969, 996, 1192
Bse1I ACTGG 5 cut(s) 156, 931, 1247, 1321, 1356
Bse3DI GCAATG 1 cut(s) 865
BseDI CCNNGG 2 cut(s) 760, 1081
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 4 cut(s) 667, 796, 969, 1453
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 4 cut(s) 678, 839, 1328, 1444
BseNI ACTGG 5 cut(s) 156, 931, 1247, 1321, 1356
BseSI GKGCMC 1 cut(s) 1133
BseXI GCAGC 2 cut(s) 347, 987
BseYI CCCAGC 1 cut(s) 1133
BsgI GTGCAG 2 cut(s) 986, 1376
BshFI GGCC 5 cut(s) 198, 671, 802, 996, 1008
BshNI GGYRCC 1 cut(s) 1017
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 3 cut(s) 970, 997, 1193
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 4 cut(s) 667, 796, 969, 1453
BsmAI GTCTC 1 cut(s) 959
BsmFI GGGAC 1 cut(s) 661
BsmI GAATGC 2 cut(s) 1190, 1338
BsnI GGCC 5 cut(s) 198, 671, 802, 996, 1008
Bso31I GGTCTC 1 cut(s) 959
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 1133, 1157
Bsp143I GATC 3 cut(s) 394, 502, 1456
Bsp19I CCATGG 1 cut(s) 1081
BspACI CCGC 2 cut(s) 1137, 1447
BspANI GGCC 5 cut(s) 198, 671, 802, 996, 1008
BspCNI CTCAG 4 cut(s) 679, 838, 1327, 1443
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 801, 1019
BspMI ACCTGC 1 cut(s) 1029
BspPI GGATC 3 cut(s) 389, 497, 1464
BspT107I GGYRCC 1 cut(s) 1017
BspTNI GGTCTC 1 cut(s) 959
BsrDI GCAATG 1 cut(s) 865
BsrFI RCCGGY 3 cut(s) 969, 996, 1192
BsrI ACTGG 5 cut(s) 156, 931, 1247, 1321, 1356
BssAI RCCGGY 3 cut(s) 969, 996, 1192
BssECI CCNNGG 2 cut(s) 760, 1081
BssMI GATC 3 cut(s) 394, 502, 1456
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 760, 1081
Bst4CI ACNGT 2 cut(s) 241, 1224
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 1122
BstC8I GCNNGC 4 cut(s) 994, 998, 1153, 1190
BstDEI CTNAG 4 cut(s) 687, 825, 1314, 1430
BstDSI CCRYGG 1 cut(s) 1081
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 3 cut(s) 397, 505, 1459
BstMAI GTCTC 1 cut(s) 959
BstMBI GATC 3 cut(s) 394, 502, 1456
BstMWI GCNNNNNNNGC 4 cut(s) 105, 989, 1122, 1178
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 1133
BstV1I GCAGC 2 cut(s) 347, 987
BstX2I RGATCY 2 cut(s) 394, 502
BstYI RGATCY 2 cut(s) 394, 502
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 5 cut(s) 198, 671, 802, 996, 1008
BtgI CCRYGG 1 cut(s) 1081
BtrI CACGTC 1 cut(s) 1057
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 3 cut(s) 643, 684, 1234
BveI ACCTGC 1 cut(s) 1029
Cac8I GCNNGC 4 cut(s) 994, 998, 1153, 1190
CciI TCATGA 1 cut(s) 565
Cfr10I RCCGGY 3 cut(s) 969, 996, 1192
Cfr13I GGNCC 5 cut(s) 416, 524, 594, 800, 1379
CseI GACGC 1 cut(s) 97
Csp6I GTAC 9 cut(s) 149, 156, 242, 369, 658, 851, 1018, 1265, 1324
CviAII CATG 6 cut(s) 126, 132, 389, 566, 791, 1082
CviQI GTAC 9 cut(s) 149, 156, 242, 369, 658, 851, 1018, 1265, 1324
DdeI CTNAG 4 cut(s) 687, 825, 1314, 1430
DpnI GATC 3 cut(s) 396, 504, 1458
DpnII GATC 3 cut(s) 394, 502, 1456
DraI TTTAAA 1 cut(s) 1029
DriI GACNNNNNGTC 1 cut(s) 1246
EaeI YGGCCR 2 cut(s) 669, 1006
Eam1104I CTCTTC 1 cut(s) 172
Eam1105I GACNNNNNGTC 1 cut(s) 1246
EarI CTCTTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 760, 1081
Eco147I AGGCCT 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 1157
Eco31I GGTCTC 1 cut(s) 959
Eco47I GGWCC 4 cut(s) 416, 524, 594, 1379
Eco88I CYCGRG 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 800
EcoT14I CCWWGG 2 cut(s) 760, 1081
EcoT22I ATGCAT 1 cut(s) 1338
EcoT38I GRGCYC 1 cut(s) 1157
ErhI CCWWGG 2 cut(s) 760, 1081
FaeI CATG 6 cut(s) 129, 135, 392, 569, 794, 1085
FalI AAGNNNNNCTT 2 cut(s) 1109, 1141
FaqI GGGAC 1 cut(s) 661
FatI CATG 6 cut(s) 125, 131, 388, 565, 790, 1081
Fnu4HI GCNGC 2 cut(s) 361, 1001
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 1157
Fsp4HI GCNGC 2 cut(s) 361, 1001
FspBI CTAG 3 cut(s) 77, 176, 200
GluI GCNGC 2 cut(s) 361, 1001
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 5 cut(s) 198, 671, 802, 996, 1008
HapII CCGG 3 cut(s) 970, 997, 1193
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 129, 135, 392, 569, 794, 1085
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HinfI GANTC 7 cut(s) 73, 221, 674, 689, 751, 879, 1097
HpaII CCGG 3 cut(s) 970, 997, 1193
HphI GGTGA 4 cut(s) 27, 317, 655, 1384
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 7 cut(s) 226, 379, 733, 874, 923, 1207, 1317
Hpy188III TCNNGA 6 cut(s) 398, 478, 494, 566, 908, 1432
Hpy8I GTNNAC 1 cut(s) 712
HpyAV CCTTC 7 cut(s) 491, 549, 869, 897, 994, 1267, 1392
HpyCH4III ACNGT 2 cut(s) 241, 1224
HpyCH4IV ACGT 4 cut(s) 101, 147, 1056, 1398
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 989, 1122, 1178
HpyF3I CTNAG 4 cut(s) 687, 825, 1314, 1430
HpySE526I ACGT 4 cut(s) 101, 147, 1056, 1398
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 129, 135, 392, 569, 794, 1085
KpnI GGTACC 1 cut(s) 1021
KroI GCCGGC 1 cut(s) 996
KroNI GCCGGC 1 cut(s) 998
Kzo9I GATC 3 cut(s) 394, 502, 1456
Lsp1109I GCAGC 2 cut(s) 347, 987
LweI GCATC 2 cut(s) 354, 601
MaeI CTAG 3 cut(s) 77, 176, 200
MaeII ACGT 4 cut(s) 101, 147, 1056, 1398
MaeIII GTNAC 4 cut(s) 109, 143, 452, 1139
MalI GATC 3 cut(s) 396, 504, 1458
MboI GATC 3 cut(s) 394, 502, 1456
MboII GAAGA 8 cut(s) 42, 51, 54, 159, 239, 404, 620, 804
MflI RGATCY 2 cut(s) 394, 502
MhlI GDGCHC 2 cut(s) 1133, 1157
MluCI AATT 5 cut(s) 261, 299, 309, 975, 1161
MlyI GAGTC 3 cut(s) 683, 698, 1106
MmeI TCCRAC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 1338
MroNI GCCGGC 1 cut(s) 996
MseI TTAA 3 cut(s) 312, 1028, 1106
MslI CAYNNNNRTG 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 1137
MspI CCGG 3 cut(s) 970, 997, 1193
Mva1269I GAATGC 2 cut(s) 1190, 1338
MwoI GCNNNNNNNGC 4 cut(s) 105, 989, 1122, 1178
NaeI GCCGGC 1 cut(s) 998
NcoI CCATGG 1 cut(s) 1081
NdeII GATC 3 cut(s) 394, 502, 1456
NgoMIV GCCGGC 1 cut(s) 996
NlaIII CATG 6 cut(s) 129, 135, 392, 569, 794, 1085
NlaIV GGNNCC 2 cut(s) 801, 1019
NmeAIII GCCGAG 1 cut(s) 697
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 1338
PaeR7I CTCGAG 1 cut(s) 364
PagI TCATGA 1 cut(s) 565
PceI AGGCCT 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 1185
PctI GAATGC 2 cut(s) 1190, 1338
PdiI GCCGGC 1 cut(s) 998
PfeI GAWTC 4 cut(s) 73, 221, 751, 879
PflFI GACNNNGTC 1 cut(s) 716
PkrI GCNGC 2 cut(s) 362, 1002
PleI GAGTC 3 cut(s) 682, 697, 1105
PpsI GAGTC 3 cut(s) 682, 697, 1105
PshBI ATTAAT 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 1133
PspN4I GGNNCC 2 cut(s) 801, 1019
PspPI GGNCC 5 cut(s) 416, 524, 594, 800, 1379
PspXI VCTCGAGB 1 cut(s) 364
PsuI RGATCY 2 cut(s) 394, 502
PsyI GACNNNGTC 1 cut(s) 716
RsaI GTAC 9 cut(s) 150, 157, 243, 370, 659, 852, 1019, 1266, 1325
RsaNI GTAC 9 cut(s) 149, 156, 242, 369, 658, 851, 1018, 1265, 1324
RseI CAYNNNNRTG 1 cut(s) 130
SaqAI TTAA 3 cut(s) 312, 1028, 1106
SatI GCNGC 2 cut(s) 361, 1001
Sau3AI GATC 3 cut(s) 394, 502, 1456
Sau96I GGNCC 5 cut(s) 416, 524, 594, 800, 1379
ScaI AGTACT 1 cut(s) 1325
SchI GAGTC 3 cut(s) 683, 698, 1106
SduI GDGCHC 2 cut(s) 1133, 1157
SfaNI GCATC 2 cut(s) 354, 601
SfcI CTRYAG 1 cut(s) 546
Sfr274I CTCGAG 1 cut(s) 364
SinI GGWCC 4 cut(s) 416, 524, 594, 1379
SlaI CTCGAG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 130
SmlI CTYRAG 3 cut(s) 364, 411, 1327
SmoI CTYRAG 3 cut(s) 364, 411, 1327
Sse9I AATT 5 cut(s) 261, 299, 309, 975, 1161
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 2 cut(s) 1137, 1447
SspMI CTAG 3 cut(s) 77, 176, 200
StuI AGGCCT 1 cut(s) 198
StyI CCWWGG 2 cut(s) 760, 1081
TaaI ACNGT 2 cut(s) 241, 1224
TaiI ACGT 4 cut(s) 104, 150, 1059, 1401
TaqI TCGA 3 cut(s) 365, 754, 1464
TasI AATT 5 cut(s) 261, 299, 309, 975, 1161
TatI WGTACW 3 cut(s) 241, 1264, 1323
TfiI GAWTC 4 cut(s) 73, 221, 751, 879
Tru1I TTAA 3 cut(s) 312, 1028, 1106
Tru9I TTAA 3 cut(s) 312, 1028, 1106
TscAI CASTG 3 cut(s) 643, 691, 1234
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 360, 1000
Tsp45I GTSAC 1 cut(s) 109
TspRI CASTG 3 cut(s) 643, 691, 1234
Tth111I GACNNNGTC 1 cut(s) 716
VpaK11BI GGWCC 4 cut(s) 416, 524, 594, 1379
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 2 cut(s) 923, 1079
XhoI CTCGAG 1 cut(s) 364
XspI CTAG 3 cut(s) 77, 176, 200
ZrmI AGTACT 1 cut(s) 1325
Zsp2I ATGCAT 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.