RLG00000026019

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
49154 .. 49513
360 bp
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UTR
Exon/CDS
Intron
RLM00000026019

Sequence Viewer

Length: 360 bp
ATGGGACAAAGTAAATTTTGCTTGTGTCCTAGTGGGACTGAAGTTGCTAGTCCTAGAGTGGTTGAAGCAATGTATGCAGGATGTGTTCCGGTGCTCATTTCTGATTATTATTATTCATTACCCTTTGGCGATGTTCTTGATTGGAGCAAGTTTACAGTAGAAATTCCACCAAAGAGAATACCAGAAATTAAGACGATATTGAAAGCTGTTTCGCATGCAGAATACTTGAAATTGCAGAAGAGGGTGATGCAAGTGAGAAGGCATTTTGAGCTGAACCGGCCTGCTAAGCCATTTGATGTGTTTCACATGGTGCTTCACTCAATTTGGCTGAGGAGGCTAAACATTAGACTTCCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.83

Weight (kDa)

9.44

Isoelectric Point (pI)

68.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 1 - 69 9.9e-25 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 14, 162
AcuI CTGAAG 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 310
AgsI TTSAA 3 cut(s) 65, 202, 229
AluBI AGCT 2 cut(s) 206, 271
AluI AGCT 2 cut(s) 206, 271
Alw21I GWGCWC 1 cut(s) 96
AoxI GGCC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 14, 162
AsuHPI GGTGA 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 329
BfaI CTAG 3 cut(s) 30, 48, 54
BlpI GCTNAGC 1 cut(s) 285
BmsI GCATC 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 75
BseGI GGATG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 346
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 2 cut(s) 89, 277
BslFI GGGAC 2 cut(s) 18, 49
BsmFI GGGAC 2 cut(s) 18, 49
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1720I GCTNAGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 216, 282
BstDEI CTNAG 2 cut(s) 285, 329
BstF5I GGATG 1 cut(s) 86
BstMWI GCNNNNNNNGC 5 cut(s) 74, 268, 277, 286, 334
BstNSI RCATGY 1 cut(s) 218
BsuRI GGCC 1 cut(s) 280
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 216, 282
Cfr10I RCCGGY 1 cut(s) 276
CviAII CATG 2 cut(s) 215, 307
CviJI RGCY 6 cut(s) 206, 271, 280, 289, 328, 337
CviKI_1 RGCY 6 cut(s) 206, 271, 280, 289, 328, 337
DdeI CTNAG 2 cut(s) 285, 329
DraIII CACNNNGTG 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 60
FaeI CATG 2 cut(s) 218, 310
FaiI YATR 3 cut(s) 75, 216, 308
FaqI GGGAC 2 cut(s) 18, 49
FatI CATG 2 cut(s) 214, 306
FokI GGATG 1 cut(s) 93
FspBI CTAG 3 cut(s) 30, 48, 54
HaeIII GGCC 1 cut(s) 280
HapII CCGG 2 cut(s) 89, 277
Hin1II CATG 2 cut(s) 218, 310
HpaII CCGG 2 cut(s) 89, 277
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 137, 353
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 77, 218, 235, 250
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 268, 277, 286, 334
HpyF3I CTNAG 2 cut(s) 285, 329
Hsp92II CATG 2 cut(s) 218, 310
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 63, 102, 195, 290, 294
LweI GCATC 1 cut(s) 237
MaeI CTAG 3 cut(s) 30, 48, 54
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 14, 162, 186, 230, 321
MnlI CCTC 3 cut(s) 234, 324, 327
MseI TTAA 2 cut(s) 189, 358
MspI CCGG 2 cut(s) 89, 277
MwoI GCNNNNNNNGC 5 cut(s) 74, 268, 277, 286, 334
NlaIII CATG 2 cut(s) 218, 310
NspI RCATGY 1 cut(s) 218
PaeI GCATGC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 189, 358
SduI GDGCHC 1 cut(s) 96
SetI ASST 2 cut(s) 208, 273
SfaNI GCATC 1 cut(s) 237
SphI GCATGC 1 cut(s) 218
Sse9I AATT 5 cut(s) 14, 162, 186, 230, 321
SspMI CTAG 3 cut(s) 30, 48, 54
TaaI ACNGT 1 cut(s) 157
TasI AATT 5 cut(s) 14, 162, 186, 230, 321
Tru1I TTAA 2 cut(s) 189, 358
Tru9I TTAA 2 cut(s) 189, 358
TspDTI ATGAA 1 cut(s) 105
XapI RAATTY 2 cut(s) 14, 162
XceI RCATGY 1 cut(s) 218
XspI CTAG 3 cut(s) 30, 48, 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.