Rw6G002770

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000727
Physical Location & Seq
Reverse (-)
4462110 .. 4464191
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002770.1

Sequence Viewer

Length: 1389 bp
ATGGTGAGCCACAGAGGAGGTGGTGGTGCGACTACTACATCCAAAGACCACCGTCTGGTGTTCATTCTCCCAATCATTATCTTCTTTGGATTGCTTTCATGGGTTTTCACTTCTCACGTGGTCTCTACTCCAAAGTCTTCAACAAAGATTGGATCCAGTTTTGTTGTTGGTGTTGAAGTGTACGGTACTACAATGGAAAAAAATCACTCTCAGATCATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGACGTCTACGACGAGCTCGCGTCGCGATTAAGTTGGGAAACCGATCACAAGATTCCGACTACATCCCTCATGGACCAATGTATTGGAATGCTAATGCATTTCACAGGAGCTATATTGAAATGGAGAAACAGTTCAAGGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGCCCTTGCAAAAGCATATACTCCATGGAGGGGAACTTTATACATGAACTGGAGATGAATAAGCAATTTCGGACGCTAGATCCTGATAAGGTACATGTTTACTTTCTTCCCTTCAGTGTGACAATGTTGGTTAAGTATGTTTATGTGCCCAACTCACATGATTTCGGTCCAATCAAGCAAACAGTGAGAGACTATGCGAATCTTATCTCCACCAAGTACCCGTTCTGGAATAGAAGCCTAGCAGCAGATCACTTTATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCTTTTCCGGAGATCAACCTTCCAAATGGAACCACACATGGTTTAATTGGTGGACCTTCTCCAAGGGTACGAACTGTGCTAGCTTTTTTTGCAGGAGGACTTCATGGCCCTATTAGGCCTCTTTTGCTGGAGTTGTGGGAGAACAAAGATCAGGACATGATGGTGCACCAGTACCTTCCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCGGTGCTCATCTCAGATCATTATGTGGTCCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGATTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAATGTCAGAGTTCATGATGGCCTGCAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

462

Amino Acids

52.91

Weight (kDa)

9.4

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 128 - 409 1.6e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1014
AatII GACGTC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 1 cut(s) 265
AccII CGCG 2 cut(s) 279, 284
AccIII TCCGGA 1 cut(s) 823
AclWI GGATC 3 cut(s) 147, 160, 512
AcsI RAATTY 1 cut(s) 1201
AcuI CTGAAG 2 cut(s) 535, 810
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 6 cut(s) 182, 187, 531, 656, 885, 989
AfiI CCNNNNNNNGG 4 cut(s) 55, 468, 712, 997
AflIII ACRYGT 1 cut(s) 532
AhdI GACNNNNNGTC 1 cut(s) 1358
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AloI GAACNNNNNNTCC 2 cut(s) 374, 406
AluBI AGCT 3 cut(s) 275, 369, 899
AluI AGCT 3 cut(s) 275, 369, 899
Alw21I GWGCWC 3 cut(s) 277, 984, 1116
Alw26I GTCTC 2 cut(s) 127, 621
Alw44I GTGCAC 1 cut(s) 980
AlwI GGATC 3 cut(s) 147, 160, 512
Aor13HI TCCGGA 1 cut(s) 823
AoxI GGCC 5 cut(s) 439, 716, 922, 932, 1375
ApaLI GTGCAC 1 cut(s) 980
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 1 cut(s) 1201
AseI ATTAAT 1 cut(s) 219
Asp700I GAANNNNTTC 2 cut(s) 389, 1166
AspS9I GGNCC 7 cut(s) 332, 440, 605, 716, 869, 923, 1135
AsuHPI GGTGA 2 cut(s) 16, 1157
AsuNHI GCTAGC 1 cut(s) 895
AvaII GGWCC 4 cut(s) 332, 605, 869, 1135
BaeGI GKGCMC 2 cut(s) 588, 984
BamHI GGATCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 277
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 3 cut(s) 129, 1309, 1357
Bbv12I GWGCWC 3 cut(s) 277, 984, 1116
BbvI GCAGC 1 cut(s) 692
BccI CCATC 2 cut(s) 970, 1367
BcgI CGANNNNNNTGC 2 cut(s) 748, 782
BciVI GTATCC 1 cut(s) 1206
BcoDI GTCTC 2 cut(s) 127, 621
BfaI CTAG 5 cut(s) 245, 515, 677, 896, 1068
BfuI GTATCC 1 cut(s) 1206
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
Bme18I GGWCC 4 cut(s) 332, 605, 869, 1135
BmeRI GACNNNNNGTC 1 cut(s) 1358
BmgT120I GGNCC 7 cut(s) 332, 440, 605, 716, 869, 923, 1135
BmiI GGNNCC 4 cut(s) 154, 717, 847, 1137
BmsI GCATC 1 cut(s) 1138
BmtI GCTAGC 1 cut(s) 899
BoxI GACNNNNGTC 1 cut(s) 51
BpiI GAAGAC 3 cut(s) 129, 1309, 1357
BplI GAGNNNNNCTC 2 cut(s) 1277, 1309
BpmI CTGGAG 3 cut(s) 275, 509, 965
BsaAI YACGTR 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 462, 878, 1073
BsaWI WCCGGW 2 cut(s) 823, 1108
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 468, 712, 997
Bse1I ACTGG 5 cut(s) 156, 492, 985, 1102, 1163
Bse3DI GCAATG 1 cut(s) 781
BseAI TCCGGA 1 cut(s) 823
BseDI CCNNGG 3 cut(s) 462, 878, 1073
BseGI GGATG 2 cut(s) 38, 321
BseLI CCNNNNNNNGG 4 cut(s) 55, 468, 712, 997
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 3 cut(s) 224, 1134, 1360
BseNI ACTGG 5 cut(s) 156, 492, 985, 1102, 1163
BseRI GAGGAG 2 cut(s) 30, 1287
BseSI GKGCMC 2 cut(s) 588, 984
BseXI GCAGC 1 cut(s) 692
Bsh1236I CGCG 2 cut(s) 279, 284
BshFI GGCC 5 cut(s) 441, 718, 924, 934, 1377
BsiHKAI GWGCWC 3 cut(s) 277, 984, 1116
BsiSI CCGG 2 cut(s) 824, 1109
BslFI GGGAC 3 cut(s) 238, 273, 1121
BslI CCNNNNNNNGG 4 cut(s) 55, 468, 712, 997
BsmAI GTCTC 2 cut(s) 127, 621
BsmFI GGGAC 3 cut(s) 238, 273, 1121
BsmI GAATGC 2 cut(s) 352, 1254
BsnI GGCC 5 cut(s) 441, 718, 924, 934, 1377
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 4 cut(s) 277, 588, 984, 1116
Bsp13I TCCGGA 1 cut(s) 823
Bsp143I GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
Bsp19I CCATGG 1 cut(s) 462
Bsp68I TCGCGA 1 cut(s) 284
BspANI GGCC 5 cut(s) 441, 718, 924, 934, 1377
BspCNI CTCAG 3 cut(s) 223, 1133, 1359
BspEI TCCGGA 1 cut(s) 823
BspFNI CGCG 2 cut(s) 279, 284
BspHI TCATGA 2 cut(s) 1218, 1369
BspLI GGNNCC 4 cut(s) 154, 717, 847, 1137
BspOI GCTAGC 1 cut(s) 899
BspPI GGATC 3 cut(s) 147, 160, 512
BspTNI GGTCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 5 cut(s) 156, 492, 985, 1102, 1163
BssECI CCNNGG 3 cut(s) 462, 878, 1073
BssMI GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
BssNI GRCGYC 1 cut(s) 262
BssT1I CCWWGG 3 cut(s) 462, 878, 1073
Bst4CI ACNGT 5 cut(s) 53, 185, 390, 622, 892
BstACI GRCGYC 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 4 cut(s) 277, 703, 897, 1379
BstDEI CTNAG 4 cut(s) 210, 1120, 1244, 1346
BstDSI CCRYGG 1 cut(s) 462
BstENI CCTNNNNNAGG 1 cut(s) 995
BstF5I GGATG 2 cut(s) 38, 321
BstFNI CGCG 2 cut(s) 279, 284
BstKTI GATC 8 cut(s) 155, 216, 305, 520, 688, 831, 967, 1126
BstMAI GTCTC 2 cut(s) 127, 621
BstMBI GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
BstMWI GCNNNNNNNGC 3 cut(s) 281, 905, 940
BstNSI RCATGY 1 cut(s) 536
BstPAI GACNNNNGTC 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 588, 984
BstUI CGCG 2 cut(s) 279, 284
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 3 cut(s) 129, 1309, 1357
BstX2I RGATCY 2 cut(s) 152, 517
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 2 cut(s) 152, 517
BsuI GTATCC 1 cut(s) 1206
BsuRI GGCC 5 cut(s) 441, 718, 924, 934, 1377
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 38, 321
BtsIMutI CAGTG 3 cut(s) 559, 627, 1095
BtuMI TCGCGA 1 cut(s) 284
Cac8I GCNNGC 4 cut(s) 277, 703, 897, 1379
CciI TCATGA 2 cut(s) 1218, 1369
Cfr13I GGNCC 7 cut(s) 332, 440, 605, 716, 869, 923, 1135
CseI GACGC 2 cut(s) 268, 520
Csp6I GTAC 6 cut(s) 181, 186, 530, 655, 884, 988
CviQI GTAC 6 cut(s) 181, 186, 530, 655, 884, 988
DdeI CTNAG 4 cut(s) 210, 1120, 1244, 1346
DpnI GATC 8 cut(s) 154, 215, 304, 519, 687, 830, 966, 1125
DpnII GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
DriI GACNNNNNGTC 1 cut(s) 1358
Eam1105I GACNNNNNGTC 1 cut(s) 1358
Ecl136II GAGCTC 1 cut(s) 275
Eco130I CCWWGG 3 cut(s) 462, 878, 1073
Eco147I AGGCCT 1 cut(s) 934
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 4 cut(s) 332, 605, 869, 1135
Eco53kI GAGCTC 1 cut(s) 275
Eco57I CTGAAG 2 cut(s) 535, 810
Eco72I CACGTG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 995
EcoT14I CCWWGG 3 cut(s) 462, 878, 1073
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 3 cut(s) 462, 878, 1073
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 3 cut(s) 238, 273, 1121
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 2 cut(s) 25, 308
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 5 cut(s) 245, 515, 677, 896, 1068
GluI GCNGC 1 cut(s) 681
GsuI CTGGAG 3 cut(s) 275, 509, 965
HaeIII GGCC 5 cut(s) 441, 718, 924, 934, 1377
HapII CCGG 2 cut(s) 824, 1109
HgaI GACGC 2 cut(s) 268, 520
Hin1I GRCGYC 1 cut(s) 262
HinfI GANTC 4 cut(s) 311, 637, 1264, 1353
HpaII CCGG 2 cut(s) 824, 1109
HphI GGTGA 2 cut(s) 16, 1157
Hpy166II GTNNAC 5 cut(s) 181, 266, 538, 869, 982
Hpy188I TCNGA 8 cut(s) 213, 316, 510, 790, 1123, 1155, 1349, 1364
Hpy188III TCNNGA 8 cut(s) 245, 283, 521, 664, 824, 968, 1219, 1370
Hpy8I GTNNAC 5 cut(s) 181, 266, 538, 869, 982
Hpy99I CGWCG 2 cut(s) 273, 284
HpyAV CCTTC 8 cut(s) 407, 559, 785, 813, 845, 882, 1001, 1251
HpyCH4III ACNGT 5 cut(s) 53, 185, 390, 622, 892
HpyCH4IV ACGT 2 cut(s) 117, 262
HpyCH4V TGCA 7 cut(s) 356, 447, 774, 908, 982, 1252, 1381
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 905, 940
HpyF3I CTNAG 4 cut(s) 210, 1120, 1244, 1346
HpySE526I ACGT 2 cut(s) 117, 262
Hsp92I GRCGYC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 823
Kzo9I GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
LmnI GCTCC 1 cut(s) 366
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 1 cut(s) 1138
MaeI CTAG 5 cut(s) 245, 515, 677, 896, 1068
MaeII ACGT 2 cut(s) 117, 262
MaeIII GTNAC 1 cut(s) 556
MalI GATC 8 cut(s) 154, 215, 304, 519, 687, 830, 966, 1125
MboI GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
MboII GAAGA 5 cut(s) 73, 129, 536, 1309, 1362
MflI RGATCY 2 cut(s) 152, 517
MhlI GDGCHC 4 cut(s) 277, 588, 984, 1116
MluCI AATT 3 cut(s) 503, 861, 1201
MlyI GAGTC 1 cut(s) 1347
MmeI TCCRAC 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 358
MroI TCCGGA 1 cut(s) 823
MroXI GAANNNNTTC 2 cut(s) 389, 1166
MseI TTAA 6 cut(s) 219, 288, 570, 860, 1188, 1387
MslI CAYNNNNRTG 1 cut(s) 977
MspI CCGG 2 cut(s) 824, 1109
Mva1269I GAATGC 2 cut(s) 352, 1254
MvnI CGCG 2 cut(s) 279, 284
MwoI GCNNNNNNNGC 3 cut(s) 281, 905, 940
NcoI CCATGG 1 cut(s) 462
NdeII GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
NheI GCTAGC 1 cut(s) 895
NlaIV GGNNCC 4 cut(s) 154, 717, 847, 1137
NmuCI GTSAC 1 cut(s) 556
NruI TCGCGA 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 536
PagI TCATGA 2 cut(s) 1218, 1369
PceI AGGCCT 1 cut(s) 934
PciI ACATGT 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PctI GAATGC 2 cut(s) 352, 1254
PdmI GAANNNNTTC 2 cut(s) 389, 1166
PfeI GAWTC 3 cut(s) 311, 637, 1264
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 1 cut(s) 682
PleI GAGTC 1 cut(s) 1347
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 1 cut(s) 1347
Ppu21I YACGTR 1 cut(s) 118
PscI ACATGT 1 cut(s) 532
PshAI GACNNNNGTC 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 1014
Psp124BI GAGCTC 1 cut(s) 277
PspCI CACGTG 1 cut(s) 118
PspN4I GGNNCC 4 cut(s) 154, 717, 847, 1137
PspPI GGNCC 7 cut(s) 332, 440, 605, 716, 869, 923, 1135
PsuI RGATCY 2 cut(s) 152, 517
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 6 cut(s) 182, 187, 531, 656, 885, 989
RsaNI GTAC 6 cut(s) 181, 186, 530, 655, 884, 988
RseI CAYNNNNRTG 1 cut(s) 977
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 6 cut(s) 219, 288, 570, 860, 1188, 1387
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 8 cut(s) 152, 213, 302, 517, 685, 828, 964, 1123
Sau96I GGNCC 7 cut(s) 332, 440, 605, 716, 869, 923, 1135
SchI GAGTC 1 cut(s) 1347
SduI GDGCHC 4 cut(s) 277, 588, 984, 1116
SfaNI GCATC 1 cut(s) 1138
SinI GGWCC 4 cut(s) 332, 605, 869, 1135
SmiMI CAYNNNNRTG 1 cut(s) 977
Sse9I AATT 3 cut(s) 503, 861, 1201
SseBI AGGCCT 1 cut(s) 934
SspMI CTAG 5 cut(s) 245, 515, 677, 896, 1068
SstI GAGCTC 1 cut(s) 277
StuI AGGCCT 1 cut(s) 934
StyI CCWWGG 3 cut(s) 462, 878, 1073
TaaI ACNGT 5 cut(s) 53, 185, 390, 622, 892
TaiI ACGT 2 cut(s) 120, 265
TaqI TCGA 1 cut(s) 758
TaqII GACCGA 1 cut(s) 593
TasI AATT 3 cut(s) 503, 861, 1201
TfiI GAWTC 3 cut(s) 311, 637, 1264
Tru1I TTAA 6 cut(s) 219, 288, 570, 860, 1188, 1387
Tru9I TTAA 6 cut(s) 219, 288, 570, 860, 1188, 1387
TscAI CASTG 3 cut(s) 559, 627, 1102
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 7 cut(s) 52, 87, 422, 498, 509, 908, 1358
TspRI CASTG 3 cut(s) 559, 627, 1102
Van91I CCANNNNNTGG 1 cut(s) 55
VneI GTGCAC 1 cut(s) 980
VpaK11BI GGWCC 4 cut(s) 332, 605, 869, 1135
VspI ATTAAT 1 cut(s) 219
XagI CCTNNNNNAGG 1 cut(s) 995
XapI RAATTY 1 cut(s) 1201
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 265
XmnI GAANNNNTTC 2 cut(s) 389, 1166
XspI CTAG 5 cut(s) 245, 515, 677, 896, 1068
ZraI GACGTC 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.