Rh6CG029800

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000727
Physical Location & Seq
Reverse (-)
2672381 .. 2674629
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG029800.1

Sequence Viewer

Length: 1197 bp
ATGGAAAAAAATCACTCTCAGATCATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGTCTACGACGAGCTCGTGTCACAATTAAGATGGGAAACCGATCACAAGATTCCGACTACATCCCCCATGGACCAATGTATTGGAATGCTAATGCATTTCACAGAAGCTATATTGAAATGGAGAAACAGTTCAAGGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGGCCTTGCAAAAGCATATATTCCATGGAGGGGAACTTTATACATGAACTGGAGGTGAATAAGCAATTTCGGACGCTAGATCCTGAGAAGGCATATGTTTATTTTCTTCCCTTCAGTGTGACAATGTTGGTTAAGTATGTTTATGTGCCCAACTCACATGATTTCGGTCCAATCAAGCAAACAGTGAGAGACTATGCGAGTCTTATCTCCACCAAGTATCCGTTCTGGAATAGAAGCCTAGCAGCAGATCACTTTATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCTTTTCCGGAGATCAACCTTCCAAATGGAAACACACATGGTTTAATTGGTGGACCTTCTCCAAGGGTACGAACTGTGCTAGCTTTTTTTGCAGGAGGACTTCATGGCCCTATTAGGCCTCTTTTGTTGGAGTTGTGGGAGAACAAAGATCAGGACATGATGGTGCACCAGTACCTTCCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCGGTGCTCATCTCAGATCACTATGTGGCCCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGGAGGTTGATTCAAGTGAGGAGGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAATGTCAGAGTTCATGATGGCCTGTCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

398

Amino Acids

46.09

Weight (kDa)

9.27

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 64 - 345 7.6e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccI GTMKAC 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 631
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 1009
AcuI CTGAAG 2 cut(s) 343, 618
AcyI GRCGYC 1 cut(s) 70
AdeI CACNNNGTG 1 cut(s) 940
AfaI GTAC 2 cut(s) 693, 797
AfiI CCNNNNNNNGG 3 cut(s) 276, 520, 805
AgsI TTSAA 9 cut(s) 185, 202, 537, 607, 869, 986, 1015, 1076, 1099
AhdI GACNNNNNGTC 1 cut(s) 1166
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 3 cut(s) 83, 177, 707
AluI AGCT 3 cut(s) 83, 177, 707
Alw21I GWGCWC 3 cut(s) 85, 792, 924
Alw26I GTCTC 1 cut(s) 429
Alw44I GTGCAC 1 cut(s) 788
AlwI GGATC 1 cut(s) 320
Aor13HI TCCGGA 1 cut(s) 631
AoxI GGCC 6 cut(s) 248, 524, 730, 740, 942, 1183
ApaLI GTGCAC 1 cut(s) 788
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 1009
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 2 cut(s) 197, 974
AspS9I GGNCC 7 cut(s) 140, 248, 413, 524, 677, 731, 943
AsuHPI GGTGA 2 cut(s) 313, 965
AsuNHI GCTAGC 1 cut(s) 703
AvaII GGWCC 3 cut(s) 140, 413, 677
BaeGI GKGCMC 2 cut(s) 396, 792
BanII GRGCYC 1 cut(s) 85
BauI CACGAG 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 1117, 1165
Bbv12I GWGCWC 3 cut(s) 85, 792, 924
BbvI GCAGC 1 cut(s) 500
BccI CCATC 3 cut(s) 94, 778, 1175
BcgI CGANNNNNNTGC 2 cut(s) 556, 590
BciVI GTATCC 2 cut(s) 474, 1014
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 5 cut(s) 53, 323, 485, 704, 876
BfuI GTATCC 2 cut(s) 474, 1014
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme18I GGWCC 3 cut(s) 140, 413, 677
BmeRI GACNNNNNGTC 1 cut(s) 1166
BmgT120I GGNCC 7 cut(s) 140, 248, 413, 524, 677, 731, 943
BmiI GGNNCC 2 cut(s) 525, 945
BmsI GCATC 1 cut(s) 946
BmtI GCTAGC 1 cut(s) 707
BpiI GAAGAC 2 cut(s) 1117, 1165
BplI GAGNNNNNCTC 2 cut(s) 1085, 1117
BpmI CTGGAG 2 cut(s) 83, 317
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 136, 270, 686, 881
BsaWI WCCGGW 2 cut(s) 631, 916
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 520, 805
Bse1I ACTGG 4 cut(s) 300, 793, 910, 971
Bse3DI GCAATG 1 cut(s) 589
BseAI TCCGGA 1 cut(s) 631
BseDI CCNNGG 4 cut(s) 136, 270, 686, 881
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 276, 520, 805
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 4 cut(s) 32, 321, 942, 1168
BseNI ACTGG 4 cut(s) 300, 793, 910, 971
BseRI GAGGAG 2 cut(s) 1095, 1096
BseSI GKGCMC 2 cut(s) 396, 792
BseXI GCAGC 1 cut(s) 500
BshFI GGCC 6 cut(s) 250, 526, 732, 742, 944, 1185
BsiHKAI GWGCWC 3 cut(s) 85, 792, 924
BsiSI CCGG 2 cut(s) 632, 917
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 276, 520, 805
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 2 cut(s) 160, 1062
BsnI GGCC 6 cut(s) 250, 526, 732, 742, 944, 1185
Bsp1286I GDGCHC 4 cut(s) 85, 396, 792, 924
Bsp13I TCCGGA 1 cut(s) 631
Bsp143I GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
Bsp19I CCATGG 2 cut(s) 136, 270
BspANI GGCC 6 cut(s) 250, 526, 732, 742, 944, 1185
BspCNI CTCAG 4 cut(s) 31, 322, 941, 1167
BspEI TCCGGA 1 cut(s) 631
BspHI TCATGA 2 cut(s) 1026, 1177
BspLI GGNNCC 2 cut(s) 525, 945
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 4 cut(s) 300, 793, 910, 971
BssECI CCNNGG 4 cut(s) 136, 270, 686, 881
BssMI GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
BssNI GRCGYC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 4 cut(s) 136, 270, 686, 881
Bst2BI CACGAG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 198, 430, 700
BstACI GRCGYC 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 511, 705
BstDEI CTNAG 5 cut(s) 18, 330, 928, 1052, 1154
BstDSI CCRYGG 2 cut(s) 136, 270
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 7 cut(s) 24, 113, 328, 496, 639, 775, 934
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
BstMWI GCNNNNNNNGC 2 cut(s) 67, 713
BstSLI GKGCMC 2 cut(s) 396, 792
BstV1I GCAGC 1 cut(s) 500
BstV2I GAAGAC 2 cut(s) 1117, 1165
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 1 cut(s) 325
BsuI GTATCC 2 cut(s) 474, 1014
BsuRI GGCC 6 cut(s) 250, 526, 732, 742, 944, 1185
BtgI CCRYGG 2 cut(s) 136, 270
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 367, 435, 903
Cac8I GCNNGC 2 cut(s) 511, 705
CciI TCATGA 2 cut(s) 1026, 1177
Cfr13I GGNCC 7 cut(s) 140, 248, 413, 524, 677, 731, 943
CseI GACGC 2 cut(s) 59, 328
Csp6I GTAC 2 cut(s) 692, 796
CviQI GTAC 2 cut(s) 692, 796
DdeI CTNAG 5 cut(s) 18, 330, 928, 1052, 1154
DpnI GATC 7 cut(s) 23, 112, 327, 495, 638, 774, 933
DpnII GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
DraIII CACNNNGTG 1 cut(s) 940
DriI GACNNNNNGTC 1 cut(s) 1166
Eam1105I GACNNNNNGTC 1 cut(s) 1166
Ecl136II GAGCTC 1 cut(s) 83
Eco130I CCWWGG 4 cut(s) 136, 270, 686, 881
Eco147I AGGCCT 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 3 cut(s) 140, 413, 677
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 2 cut(s) 343, 618
EcoICRI GAGCTC 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoT14I CCWWGG 4 cut(s) 136, 270, 686, 881
EcoT22I ATGCAT 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 4 cut(s) 136, 270, 686, 881
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 46
FauNDI CATATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 5 cut(s) 53, 323, 485, 704, 876
GluI GCNGC 1 cut(s) 489
GsuI CTGGAG 2 cut(s) 83, 317
HaeIII GGCC 6 cut(s) 250, 526, 732, 742, 944, 1185
HapII CCGG 2 cut(s) 632, 917
HgaI GACGC 2 cut(s) 59, 328
Hin1I GRCGYC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 1191
HindII GTYRAC 1 cut(s) 1191
HinfI GANTC 4 cut(s) 119, 445, 1072, 1161
HpaII CCGG 2 cut(s) 632, 917
HphI GGTGA 2 cut(s) 313, 965
Hpy166II GTNNAC 4 cut(s) 74, 677, 790, 1191
Hpy188I TCNGA 8 cut(s) 21, 124, 318, 598, 931, 963, 1157, 1172
Hpy188III TCNNGA 7 cut(s) 53, 329, 472, 632, 776, 1027, 1178
Hpy8I GTNNAC 4 cut(s) 74, 677, 790, 1191
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 8 cut(s) 215, 328, 367, 593, 621, 653, 690, 809
HpyCH4III ACNGT 3 cut(s) 198, 430, 700
HpyCH4V TGCA 6 cut(s) 164, 255, 582, 716, 790, 1060
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 713
HpyF3I CTNAG 5 cut(s) 18, 330, 928, 1052, 1154
Hsp92I GRCGYC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 631
Kzo9I GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 1 cut(s) 946
MaeI CTAG 5 cut(s) 53, 323, 485, 704, 876
MaeIII GTNAC 2 cut(s) 88, 364
MalI GATC 7 cut(s) 23, 112, 327, 495, 638, 774, 933
MboI GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
MboII GAAGA 3 cut(s) 344, 1117, 1170
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 4 cut(s) 85, 396, 792, 924
MluCI AATT 4 cut(s) 93, 311, 669, 1009
MlyI GAGTC 2 cut(s) 454, 1155
MmeI TCCRAC 2 cut(s) 147, 732
Mph1103I ATGCAT 1 cut(s) 166
MroI TCCGGA 1 cut(s) 631
MroXI GAANNNNTTC 2 cut(s) 197, 974
MseI TTAA 6 cut(s) 27, 96, 378, 668, 996, 1195
MslI CAYNNNNRTG 1 cut(s) 785
MspI CCGG 2 cut(s) 632, 917
Mva1269I GAATGC 2 cut(s) 160, 1062
MwoI GCNNNNNNNGC 2 cut(s) 67, 713
NcoI CCATGG 2 cut(s) 136, 270
NdeI CATATG 1 cut(s) 340
NdeII GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
NheI GCTAGC 1 cut(s) 703
NlaIV GGNNCC 2 cut(s) 525, 945
NmuCI GTSAC 2 cut(s) 88, 364
NsiI ATGCAT 1 cut(s) 166
PagI TCATGA 2 cut(s) 1026, 1177
PceI AGGCCT 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 2 cut(s) 160, 1062
PdmI GAANNNNTTC 2 cut(s) 197, 974
PfeI GAWTC 2 cut(s) 119, 1072
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 2 cut(s) 453, 1155
PpsI GAGTC 2 cut(s) 453, 1155
PshBI ATTAAT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 525, 945
PspPI GGNCC 7 cut(s) 140, 248, 413, 524, 677, 731, 943
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 693, 797
RsaNI GTAC 2 cut(s) 692, 796
RseI CAYNNNNRTG 1 cut(s) 785
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 6 cut(s) 27, 96, 378, 668, 996, 1195
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 7 cut(s) 21, 110, 325, 493, 636, 772, 931
Sau96I GGNCC 7 cut(s) 140, 248, 413, 524, 677, 731, 943
SchI GAGTC 2 cut(s) 454, 1155
SduI GDGCHC 4 cut(s) 85, 396, 792, 924
SetI ASST 9 cut(s) 85, 179, 207, 303, 645, 682, 709, 801, 1070
SfaNI GCATC 1 cut(s) 946
SinI GGWCC 3 cut(s) 140, 413, 677
SmiMI CAYNNNNRTG 1 cut(s) 785
Sse9I AATT 4 cut(s) 93, 311, 669, 1009
SseBI AGGCCT 1 cut(s) 742
SspMI CTAG 5 cut(s) 53, 323, 485, 704, 876
SstI GAGCTC 1 cut(s) 85
StuI AGGCCT 1 cut(s) 742
StyI CCWWGG 4 cut(s) 136, 270, 686, 881
TaaI ACNGT 3 cut(s) 198, 430, 700
TaqI TCGA 1 cut(s) 566
TaqII GACCGA 1 cut(s) 401
TasI AATT 4 cut(s) 93, 311, 669, 1009
TfiI GAWTC 2 cut(s) 119, 1072
Tru1I TTAA 6 cut(s) 27, 96, 378, 668, 996, 1195
Tru9I TTAA 6 cut(s) 27, 96, 378, 668, 996, 1195
TscAI CASTG 3 cut(s) 367, 435, 910
TseFI GTSAC 2 cut(s) 88, 364
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 2 cut(s) 88, 364
TspDTI ATGAA 4 cut(s) 230, 306, 716, 1166
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 3 cut(s) 367, 435, 910
VneI GTGCAC 1 cut(s) 788
VpaK11BI GGWCC 3 cut(s) 140, 413, 677
VspI ATTAAT 1 cut(s) 27
XagI CCTNNNNNAGG 1 cut(s) 803
XapI RAATTY 1 cut(s) 1009
XbaI TCTAGA 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 73
XmnI GAANNNNTTC 2 cut(s) 197, 974
XspI CTAG 5 cut(s) 53, 323, 485, 704, 876
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.