Rorug02G0245900

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000727
Physical Location & Seq
Reverse (-)
25551494 .. 25554229
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0245900.1

Sequence Viewer

Length: 1275 bp
ATGGATGTTCGATTTCGAAGACCCCAAACCAGTCCAGATAGAGCCAAAGTGTGCATGCAGCAACTGCAGCCAAGAGTAGCAGTCAACAAACCCACCATCAAAAAGGTCCAAATTGTCTACTACCTCTCAAGAAATGGTCATCTTGAACATCCTCACTACATGGAGATCACCCATTTGCCCAATCAACCTCTTCGTTTGAGAGATGTAATGGATAGGCTCACTGCTCTCAGAGGCAAGGGCATGCCCTCACTATATTCCTGGTCCTGCAAAAGGAGCTACAAGAACGGTTATGTGTGGAATGATTTAGCAGAAAACGACATAATCTACCCAGCAGATGGAGCTGAGTATGTACTCAAAGGCTCTGAGCTAGTTGAAGGCTGCTCTGAGAGATTGAACCAGATTCAAATAAGCAGCCCCCAACAAATTCAAGACTCAAATTTTGGGTCCAAGAGGAGATCACCACCACTTGCTCCAACCCCAAACAGTAACCACAAGTTTCATGAAGACCCTGATCAATATGATGAACAAGAAGAAGAAGAAGTTGACTATGAGGACGAGAAAACAAGCTACACAAGCTCCACAACAACAAACTCTCGCTGCTCCAGAGGAGTCTCCACAGATGAACTCGAAGAACAACAACAACAACCACCGCAAACCCACAAGACTCCCCCCGAGTCATCTCCTCTCCCAAATGCACCAGCTTCAGTGTTGAACCAAGCAAACCACAGCAACAATGTGTCCATGAGGTTCGAGGACGGCGACCCCATTGTTACGAAACAGAGCTACTCTGTTTCGAAGGCAGGGCAGGGTAAGAACTCTGTTCTGCTCCAGCTCATTGCTTGCGGCAGCTCGGCCGTGGCTAAGGCCAAAAGCACACCGTGCGTGAGTCAAGGGATTGTGAAGAGGGAGAGGAGTAGTCAGAGTTTTCGTAAAGAGGTGGTGTACAGGAGTGCGGTGAAGGTTGCCATAGAGGATGAGGATATGATTACTTACATGTCTGAGAATCCGAGGTTTGGGAATTTACAGGCGGAGGAGAAGGAGTATTTCAGTGGGAGCATTGTGGAGTCCATGAAGGAAGATCAAAGAGTACATTCAGCTGAACCTGTGCTCAAAAAATCCAATTCCTATAATGAAGAAAGGAGCAACAAAGCCGGGCTAGGAGAAGAAACAGTGGAGGAGGAGGAAGAGAAGAGAGAGAAAGCAGCGGTGAGAGGAAATTGCATTCCTCGCAAGTTCTGTTCTACTGGTGCATCATCAAAGCCAACCAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

424

Amino Acids

47.84

Weight (kDa)

6.55

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 36 - 124 9.7e-48 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 335
AccI GTMKAC 1 cut(s) 117
AciI CCGC 5 cut(s) 650, 843, 953, 1028, 1205
AcoI YGGCCR 1 cut(s) 852
AcsI RAATTY 3 cut(s) 423, 436, 1018
AcuI CTGAAG 1 cut(s) 687
AdeI CACNNNGTG 1 cut(s) 879
AfaI GTAC 3 cut(s) 351, 944, 1089
AfiI CCNNNNNNNGG 3 cut(s) 270, 335, 1013
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 6 cut(s) 146, 374, 394, 404, 428, 712
AjnI CCWGG 2 cut(s) 257, 1265
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 1 cut(s) 616
AlwNI CAGNNNCTG 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 2 cut(s) 852, 864
ApeKI GCWGC 7 cut(s) 58, 67, 378, 411, 597, 846, 1202
ApoI RAATTY 3 cut(s) 423, 436, 1018
ArsI GACNNNNNNTTYG 4 cut(s) 422, 428, 454, 460
AspS9I GGNCC 3 cut(s) 106, 261, 444
AsuC2I CCSGG 1 cut(s) 1153
AsuHPI GGTGA 4 cut(s) 160, 450, 967, 1219
AsuII TTCGAA 2 cut(s) 16, 794
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 3 cut(s) 106, 261, 444
BbsI GAAGAC 2 cut(s) 25, 510
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 7 cut(s) 70, 79, 365, 423, 584, 858, 1214
BccI CCATC 2 cut(s) 104, 329
BceAI ACGGC 2 cut(s) 772, 839
BciT130I CCWGG 2 cut(s) 259, 1267
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 1153
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 2 cut(s) 368, 1157
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 844, 847, 1203
BlsI GCNGC 8 cut(s) 60, 69, 380, 413, 599, 845, 848, 1204
Bme1390I CCNGG 3 cut(s) 259, 1153, 1267
Bme18I GGWCC 3 cut(s) 106, 261, 444
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 3 cut(s) 106, 261, 444
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 3 cut(s) 259, 1153, 1267
BmsI GCATC 1 cut(s) 1259
BpiI GAAGAC 2 cut(s) 25, 510
BpmI CTGGAG 2 cut(s) 586, 812
Bpu10I CCTNAGC 1 cut(s) 861
Bpu14I TTCGAA 2 cut(s) 16, 794
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 1153
BsaJI CCNNGG 2 cut(s) 855, 1007
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 1025, 1055
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 335, 1013
Bse1I ACTGG 2 cut(s) 30, 1249
Bse3DI GCAATG 1 cut(s) 834
BseBI CCWGG 2 cut(s) 259, 1267
BseDI CCNNGG 2 cut(s) 855, 1007
BseGI GGATG 3 cut(s) 10, 148, 979
BseLI CCNNNNNNNGG 3 cut(s) 270, 335, 1013
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 5 cut(s) 241, 333, 354, 375, 990
BseNI ACTGG 2 cut(s) 30, 1249
BseRI GAGGAG 7 cut(s) 466, 621, 672, 925, 1046, 1190, 1193
BseX3I CGGCCG 1 cut(s) 852
BseXI GCAGC 7 cut(s) 70, 79, 365, 423, 584, 858, 1214
BseYI CCCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 855
BshFI GGCC 2 cut(s) 854, 866
BsiEI CGRYCG 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 1110
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 1 cut(s) 1152
BslI CCNNNNNNNGG 3 cut(s) 270, 335, 1013
BsmAI GTCTC 1 cut(s) 616
BsmI GAATGC 1 cut(s) 1221
BsnI GGCC 2 cut(s) 854, 866
BsoBI CYCGRG 1 cut(s) 671
Bsp119I TTCGAA 2 cut(s) 16, 794
Bsp1286I GDGCHC 1 cut(s) 1110
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 4 cut(s) 165, 455, 511, 1078
BspACI CCGC 5 cut(s) 650, 843, 953, 1028, 1205
BspANI GGCC 2 cut(s) 854, 866
BspCNI CTCAG 5 cut(s) 240, 334, 355, 376, 991
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 2 cut(s) 16, 794
BsrDI GCAATG 1 cut(s) 834
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 2 cut(s) 30, 1249
BssECI CCNNGG 2 cut(s) 855, 1007
BssMI GATC 4 cut(s) 165, 455, 511, 1078
Bst2UI CCWGG 2 cut(s) 259, 1267
Bst4CI ACNGT 4 cut(s) 287, 485, 879, 1171
Bst6I CTCTTC 4 cut(s) 195, 896, 1179, 1184
BstAPI GCANNNNNTGC 2 cut(s) 64, 879
BstAUI TGTACA 1 cut(s) 942
BstBI TTCGAA 2 cut(s) 16, 794
BstC8I GCNNGC 3 cut(s) 56, 242, 841
BstDEI CTNAG 6 cut(s) 227, 342, 363, 384, 861, 999
BstDSI CCRYGG 1 cut(s) 855
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 10, 148, 979
BstKTI GATC 4 cut(s) 168, 458, 514, 1081
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 4 cut(s) 165, 455, 511, 1078
BstMCI CGRYCG 1 cut(s) 855
BstMWI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 879, 1227
BstNI CCWGG 2 cut(s) 259, 1267
BstNSI RCATGY 3 cut(s) 58, 244, 997
BstSCI CCNGG 3 cut(s) 257, 1151, 1265
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 7 cut(s) 70, 79, 365, 423, 584, 858, 1214
BstV2I GAAGAC 2 cut(s) 25, 510
BstZI CGGCCG 1 cut(s) 852
BsuRI GGCC 2 cut(s) 854, 866
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 3 cut(s) 10, 148, 979
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 4 cut(s) 219, 711, 1054, 1176
Cac8I GCNNGC 3 cut(s) 56, 242, 841
CaiI CAGNNNCTG 1 cut(s) 64
CciI TCATGA 1 cut(s) 499
Cfr13I GGNCC 3 cut(s) 106, 261, 444
Csp6I GTAC 3 cut(s) 350, 943, 1088
CviAII CATG 7 cut(s) 55, 160, 241, 500, 742, 994, 1069
CviQI GTAC 3 cut(s) 350, 943, 1088
DdeI CTNAG 6 cut(s) 227, 342, 363, 384, 861, 999
DpnI GATC 4 cut(s) 167, 457, 513, 1080
DpnII GATC 4 cut(s) 165, 455, 511, 1078
DraIII CACNNNGTG 1 cut(s) 879
EaeI YGGCCR 1 cut(s) 852
EagI CGGCCG 1 cut(s) 852
Eam1104I CTCTTC 4 cut(s) 195, 896, 1179, 1184
EarI CTCTTC 4 cut(s) 195, 896, 1179, 1184
EciI GGCGGA 1 cut(s) 1043
EclXI CGGCCG 1 cut(s) 852
Eco47I GGWCC 3 cut(s) 106, 261, 444
Eco52I CGGCCG 1 cut(s) 852
Eco57I CTGAAG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 257, 1265
FaeI CATG 7 cut(s) 58, 163, 244, 503, 745, 997, 1072
FatI CATG 7 cut(s) 54, 159, 240, 499, 741, 993, 1068
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 844, 847, 1203
FokI GGATG 3 cut(s) 17, 135, 986
Fsp4HI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 844, 847, 1203
FspBI CTAG 2 cut(s) 368, 1157
GluI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 844, 847, 1203
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 2 cut(s) 586, 812
HaeIII GGCC 2 cut(s) 854, 866
HapII CCGG 1 cut(s) 1152
Hin1II CATG 7 cut(s) 58, 163, 244, 503, 745, 997, 1072
HincII GTYRAC 2 cut(s) 85, 544
HindII GTYRAC 2 cut(s) 85, 544
HinfI GANTC 8 cut(s) 400, 431, 609, 664, 674, 886, 1003, 1064
HpaII CCGG 1 cut(s) 1152
HphI GGTGA 4 cut(s) 160, 450, 967, 1219
Hpy166II GTNNAC 4 cut(s) 85, 118, 544, 943
Hpy188I TCNGA 6 cut(s) 230, 364, 385, 921, 1000, 1008
Hpy188III TCNNGA 6 cut(s) 35, 129, 143, 428, 500, 603
Hpy8I GTNNAC 4 cut(s) 85, 118, 544, 943
HpyAV CCTTC 5 cut(s) 368, 790, 952, 1030, 1066
HpyCH4III ACNGT 4 cut(s) 287, 485, 879, 1171
HpyCH4V TGCA 7 cut(s) 54, 58, 67, 267, 695, 1221, 1250
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 879, 1227
HpyF3I CTNAG 6 cut(s) 227, 342, 363, 384, 861, 999
Hsp92II CATG 7 cut(s) 58, 163, 244, 503, 745, 997, 1072
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 165, 455, 511, 1078
LmnI GCTCC 8 cut(s) 273, 338, 475, 581, 605, 831, 1053, 1140
Lsp1109I GCAGC 7 cut(s) 70, 79, 365, 423, 584, 858, 1214
LweI GCATC 1 cut(s) 1259
MaeI CTAG 2 cut(s) 368, 1157
MaeIII GTNAC 2 cut(s) 485, 769
MalI GATC 4 cut(s) 167, 457, 513, 1080
MboI GATC 4 cut(s) 165, 455, 511, 1078
MhlI GDGCHC 1 cut(s) 1110
MluCI AATT 6 cut(s) 111, 423, 436, 1018, 1120, 1216
MlyI GAGTC 6 cut(s) 425, 618, 658, 683, 895, 1073
MmeI TCCRAC 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 1097, 1205
MspI CCGG 1 cut(s) 1152
MspR9I CCNGG 3 cut(s) 259, 1153, 1267
Mva1269I GAATGC 1 cut(s) 1221
MvaI CCWGG 2 cut(s) 259, 1267
MwoI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 879, 1227
NciI CCSGG 1 cut(s) 1153
NdeII GATC 4 cut(s) 165, 455, 511, 1078
NlaIII CATG 7 cut(s) 58, 163, 244, 503, 745, 997, 1072
NlaIV GGNNCC 1 cut(s) 445
NmeAIII GCCGAG 1 cut(s) 830
NspI RCATGY 3 cut(s) 58, 244, 997
NspV TTCGAA 2 cut(s) 16, 794
PaeI GCATGC 2 cut(s) 58, 244
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 756
PctI GAATGC 1 cut(s) 1221
PfeI GAWTC 2 cut(s) 400, 1003
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 8 cut(s) 60, 69, 380, 413, 599, 845, 848, 1204
PleI GAGTC 6 cut(s) 425, 617, 658, 682, 894, 1072
PpsI GAGTC 6 cut(s) 425, 617, 658, 682, 894, 1072
PscI ACATGT 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 257, 1265
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 257, 1265
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 106, 261, 444
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 3 cut(s) 351, 944, 1089
RsaNI GTAC 3 cut(s) 350, 943, 1088
SatI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 844, 847, 1203
Sau3AI GATC 4 cut(s) 165, 455, 511, 1078
Sau96I GGNCC 3 cut(s) 106, 261, 444
SchI GAGTC 6 cut(s) 425, 618, 658, 683, 895, 1073
ScrFI CCNGG 3 cut(s) 259, 1153, 1267
SduI GDGCHC 1 cut(s) 1110
SfaNI GCATC 1 cut(s) 1259
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 2 cut(s) 16, 794
SinI GGWCC 3 cut(s) 106, 261, 444
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SphI GCATGC 2 cut(s) 58, 244
Sse9I AATT 6 cut(s) 111, 423, 436, 1018, 1120, 1216
SsiI CCGC 5 cut(s) 650, 843, 953, 1028, 1205
SspMI CTAG 2 cut(s) 368, 1157
StyD4I CCNGG 3 cut(s) 257, 1151, 1265
TaaI ACNGT 4 cut(s) 287, 485, 879, 1171
TaqI TCGA 5 cut(s) 10, 16, 627, 750, 794
TasI AATT 6 cut(s) 111, 423, 436, 1018, 1120, 1216
TatI WGTACW 3 cut(s) 349, 942, 1087
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 2 cut(s) 400, 1003
TscAI CASTG 4 cut(s) 226, 711, 1054, 1176
TseI GCWGC 7 cut(s) 58, 67, 378, 411, 597, 846, 1202
TspDTI ATGAA 6 cut(s) 488, 516, 537, 636, 1085, 1146
TspRI CASTG 4 cut(s) 226, 711, 1054, 1176
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 3 cut(s) 106, 261, 444
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 3 cut(s) 423, 436, 1018
XceI RCATGY 3 cut(s) 58, 244, 997
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 2 cut(s) 368, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.