Rroxscaffold_7G00214700

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000727
Physical Location & Seq
Forward (+)
65334756 .. 65336829
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214700.1

Sequence Viewer

Length: 1257 bp
ATGGTGAGCCACAGAGGTGGTGGTGGTGGTGCGACTACTACCTCCAAAGCCCACCGCCTGGTGTTCATTCTCCCAATCATTATCATCTTTGGATTGCTTTCATGGGTTTTCACTTCTCACGTGGTCTCTACTCCAAAGTCTTCAACAAAGATTGGATCCAGTTTTGTTGTTGGTGTTGAAGTGTACGGTACTACAATGGAAAAAAATCACTCTCAGATTATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGTCTACGACGAGCTCGTGTCGCGATTAAGTTGGGAAACCGATCACAAGATTCCGACTACATCCCTCATGGACCAATGTATTGGAATGCTAATGCATTTCACAGGAGCTATATTGAAATGGAGAAACAGTTCAAGGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGTCCTTGCAAAAGCATATATTCCATGGAGGGGAACTTTATACATGAACTGGAGGTGAATAAGCAATTTCGGACGCTAGATCCTGATAAGGCACATGTTTACTTTCTTCCCTTCAGTGTGACAATGTTGGTTAAGTATGTTTATGTGCCCAACTCACATGATTTCGGTCCAATCAAGCAAACAGTGAGAGACTATGCGAGTCTCATCTCCACCAAGTATCCGTTCTGGAATAGAAGCCTAGCAGCAGATCACTTTATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCTTTTCCGGAGATCAACCTTCCAAATGGAAACACACATGGTTTAATTGGTGGACCTTCTCCAAGGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCGGTGCTCATCTCAGATCATTATGTGGCCCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGATTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAACGTCAGAGTTCATGATGGCCTGCCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

418

Amino Acids

47.51

Weight (kDa)

9.53

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 129 - 282 1.1e-19 Exostosin GT47 domain
Exostosin_GT47 PF03016 294 - 365 1.9e-25 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 58
AccI GTMKAC 1 cut(s) 268
AccII CGCG 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 1 cut(s) 55
AclWI GGATC 3 cut(s) 150, 163, 515
AcsI RAATTY 1 cut(s) 1069
AcuI CTGAAG 2 cut(s) 538, 813
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 2 cut(s) 185, 190
AfiI CCNNNNNNNGG 3 cut(s) 58, 471, 715
AflIII ACRYGT 1 cut(s) 535
AhdI GACNNNNNGTC 1 cut(s) 1226
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AleI CACNNNNGTG 1 cut(s) 15
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 2 cut(s) 278, 372
AluI AGCT 2 cut(s) 278, 372
Alw21I GWGCWC 2 cut(s) 280, 984
Alw26I GTCTC 3 cut(s) 130, 624, 647
AlwI GGATC 3 cut(s) 150, 163, 515
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 3 cut(s) 719, 1002, 1243
ApeKI GCWGC 1 cut(s) 683
ApoI RAATTY 1 cut(s) 1069
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 2 cut(s) 392, 1034
AspS9I GGNCC 6 cut(s) 335, 443, 608, 719, 872, 1003
AsuHPI GGTGA 3 cut(s) 16, 508, 1025
AvaII GGWCC 4 cut(s) 335, 443, 608, 872
BaeGI GKGCMC 1 cut(s) 591
BamHI GGATCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 280
BauI CACGAG 1 cut(s) 279
BbrPI CACGTG 1 cut(s) 121
BbsI GAAGAC 3 cut(s) 132, 1177, 1225
Bbv12I GWGCWC 2 cut(s) 280, 984
BbvI GCAGC 1 cut(s) 695
BccI CCATC 1 cut(s) 1235
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 2 cut(s) 669, 1074
BcoDI GTCTC 3 cut(s) 130, 624, 647
BfaI CTAG 4 cut(s) 248, 518, 680, 936
BfuI GTATCC 2 cut(s) 669, 1074
BisI GCNGC 1 cut(s) 684
BlsI GCNGC 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 4 cut(s) 335, 443, 608, 872
BmeRI GACNNNNNGTC 1 cut(s) 1226
BmgT120I GGNCC 6 cut(s) 335, 443, 608, 719, 872, 1003
BmiI GGNNCC 3 cut(s) 157, 720, 1005
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 1006
BpiI GAAGAC 3 cut(s) 132, 1177, 1225
BplI GAGNNNNNCTC 2 cut(s) 1145, 1177
BpmI CTGGAG 2 cut(s) 278, 512
BsaAI YACGTR 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 3 cut(s) 465, 881, 941
BsaWI WCCGGW 2 cut(s) 826, 976
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 471, 715
Bse1I ACTGG 4 cut(s) 159, 495, 970, 1031
Bse3DI GCAATG 1 cut(s) 784
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 3 cut(s) 465, 881, 941
BseGI GGATG 2 cut(s) 324, 891
BseLI CCNNNNNNNGG 3 cut(s) 58, 471, 715
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 3 cut(s) 227, 1002, 1228
BseNI ACTGG 4 cut(s) 159, 495, 970, 1031
BseRI GAGGAG 1 cut(s) 1155
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 3 cut(s) 721, 1004, 1245
BsiHKAI GWGCWC 2 cut(s) 280, 984
BsiSI CCGG 2 cut(s) 827, 977
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 3 cut(s) 58, 471, 715
BsmAI GTCTC 3 cut(s) 130, 624, 647
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 2 cut(s) 355, 1122
BsnI GGCC 3 cut(s) 721, 1004, 1245
Bso31I GGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 3 cut(s) 280, 591, 984
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 6 cut(s) 155, 305, 520, 688, 831, 991
Bsp19I CCATGG 1 cut(s) 465
Bsp68I TCGCGA 1 cut(s) 287
BspACI CCGC 1 cut(s) 55
BspANI GGCC 3 cut(s) 721, 1004, 1245
BspCNI CTCAG 3 cut(s) 226, 1001, 1227
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 287
BspHI TCATGA 2 cut(s) 1086, 1237
BspLI GGNNCC 3 cut(s) 157, 720, 1005
BspPI GGATC 3 cut(s) 150, 163, 515
BspTNI GGTCTC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 4 cut(s) 159, 495, 970, 1031
BssECI CCNNGG 3 cut(s) 465, 881, 941
BssMI GATC 6 cut(s) 155, 305, 520, 688, 831, 991
BssNI GRCGYC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 3 cut(s) 465, 881, 941
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 188, 393, 625
BstACI GRCGYC 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 706, 1247
BstDEI CTNAG 5 cut(s) 213, 988, 1112, 1214, 1254
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 324, 891
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 6 cut(s) 158, 308, 523, 691, 834, 994
BstMAI GTCTC 3 cut(s) 130, 624, 647
BstMBI GATC 6 cut(s) 155, 305, 520, 688, 831, 991
BstMWI GCNNNNNNNGC 2 cut(s) 262, 284
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 591
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 695
BstV2I GAAGAC 3 cut(s) 132, 1177, 1225
BstX2I RGATCY 2 cut(s) 155, 520
BstXI CCANNNNNNTGG 2 cut(s) 17, 345
BstYI RGATCY 2 cut(s) 155, 520
BsuI GTATCC 2 cut(s) 669, 1074
BsuRI GGCC 3 cut(s) 721, 1004, 1245
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 2 cut(s) 324, 891
BtsIMutI CAGTG 3 cut(s) 562, 630, 963
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 706, 1247
CciI TCATGA 2 cut(s) 1086, 1237
Cfr13I GGNCC 6 cut(s) 335, 443, 608, 719, 872, 1003
CseI GACGC 2 cut(s) 254, 523
Csp6I GTAC 2 cut(s) 184, 189
CviQI GTAC 2 cut(s) 184, 189
DdeI CTNAG 5 cut(s) 213, 988, 1112, 1214, 1254
DpnI GATC 6 cut(s) 157, 307, 522, 690, 833, 993
DpnII GATC 6 cut(s) 155, 305, 520, 688, 831, 991
DriI GACNNNNNGTC 1 cut(s) 1226
Eam1105I GACNNNNNGTC 1 cut(s) 1226
Ecl136II GAGCTC 1 cut(s) 278
Eco130I CCWWGG 3 cut(s) 465, 881, 941
Eco24I GRGCYC 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 4 cut(s) 335, 443, 608, 872
Eco53kI GAGCTC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 538, 813
Eco72I CACGTG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 3 cut(s) 465, 881, 941
EcoT22I ATGCAT 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 280
ErhI CCWWGG 3 cut(s) 465, 881, 941
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FaqI GGGAC 1 cut(s) 241
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 684
FokI GGATG 2 cut(s) 311, 898
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 684
FspBI CTAG 4 cut(s) 248, 518, 680, 936
GluI GCNGC 1 cut(s) 684
GsuI CTGGAG 2 cut(s) 278, 512
HaeIII GGCC 3 cut(s) 721, 1004, 1245
HapII CCGG 2 cut(s) 827, 977
HgaI GACGC 2 cut(s) 254, 523
Hin1I GRCGYC 1 cut(s) 265
HinfI GANTC 4 cut(s) 314, 640, 1132, 1221
HpaII CCGG 2 cut(s) 827, 977
HphI GGTGA 3 cut(s) 16, 508, 1025
Hpy166II GTNNAC 4 cut(s) 184, 269, 541, 872
Hpy188I TCNGA 8 cut(s) 216, 319, 513, 793, 991, 1023, 1217, 1232
Hpy188III TCNNGA 7 cut(s) 248, 286, 524, 667, 827, 1087, 1238
Hpy8I GTNNAC 4 cut(s) 184, 269, 541, 872
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 7 cut(s) 410, 562, 788, 816, 848, 885, 1119
HpyCH4III ACNGT 3 cut(s) 188, 393, 625
HpyCH4IV ACGT 2 cut(s) 120, 1227
HpyCH4V TGCA 4 cut(s) 359, 450, 777, 1120
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 284
HpyF3I CTNAG 5 cut(s) 213, 988, 1112, 1214, 1254
HpySE526I ACGT 2 cut(s) 120, 1227
Hsp92I GRCGYC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 6 cut(s) 155, 305, 520, 688, 831, 991
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 1 cut(s) 1006
MaeI CTAG 4 cut(s) 248, 518, 680, 936
MaeII ACGT 2 cut(s) 120, 1227
MaeIII GTNAC 1 cut(s) 559
MalI GATC 6 cut(s) 157, 307, 522, 690, 833, 993
MboI GATC 6 cut(s) 155, 305, 520, 688, 831, 991
MboII GAAGA 4 cut(s) 132, 539, 1177, 1230
MflI RGATCY 2 cut(s) 155, 520
MhlI GDGCHC 3 cut(s) 280, 591, 984
MluCI AATT 3 cut(s) 506, 864, 1069
MlyI GAGTC 2 cut(s) 649, 1215
MmeI TCCRAC 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 361
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 2 cut(s) 392, 1034
MseI TTAA 5 cut(s) 222, 291, 573, 863, 1056
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 827, 977
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 2 cut(s) 355, 1122
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 262, 284
NcoI CCATGG 1 cut(s) 465
NdeII GATC 6 cut(s) 155, 305, 520, 688, 831, 991
NlaIV GGNNCC 3 cut(s) 157, 720, 1005
NmuCI GTSAC 1 cut(s) 559
NruI TCGCGA 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 15
PagI TCATGA 2 cut(s) 1086, 1237
PciI ACATGT 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PctI GAATGC 2 cut(s) 355, 1122
PdmI GAANNNNTTC 2 cut(s) 392, 1034
PfeI GAWTC 2 cut(s) 314, 1132
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 1 cut(s) 685
PleI GAGTC 2 cut(s) 648, 1215
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 2 cut(s) 648, 1215
Ppu21I YACGTR 1 cut(s) 121
PscI ACATGT 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 57
PspCI CACGTG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 157, 720, 1005
PspPI GGNCC 6 cut(s) 335, 443, 608, 719, 872, 1003
PsuI RGATCY 2 cut(s) 155, 520
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 2 cut(s) 185, 190
RsaNI GTAC 2 cut(s) 184, 189
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 5 cut(s) 222, 291, 573, 863, 1056
SatI GCNGC 1 cut(s) 684
Sau3AI GATC 6 cut(s) 155, 305, 520, 688, 831, 991
Sau96I GGNCC 6 cut(s) 335, 443, 608, 719, 872, 1003
SchI GAGTC 2 cut(s) 649, 1215
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 3 cut(s) 280, 591, 984
SfaNI GCATC 1 cut(s) 1006
SinI GGWCC 4 cut(s) 335, 443, 608, 872
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 506, 864, 1069
SsiI CCGC 1 cut(s) 55
SspMI CTAG 4 cut(s) 248, 518, 680, 936
SstI GAGCTC 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 3 cut(s) 465, 881, 941
TaaI ACNGT 3 cut(s) 188, 393, 625
TaiI ACGT 2 cut(s) 123, 1230
TaqI TCGA 1 cut(s) 761
TaqII GACCGA 1 cut(s) 596
TasI AATT 3 cut(s) 506, 864, 1069
TfiI GAWTC 2 cut(s) 314, 1132
Tru1I TTAA 5 cut(s) 222, 291, 573, 863, 1056
Tru9I TTAA 5 cut(s) 222, 291, 573, 863, 1056
TscAI CASTG 3 cut(s) 562, 630, 970
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 5 cut(s) 55, 90, 425, 501, 1226
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 3 cut(s) 562, 630, 970
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 4 cut(s) 335, 443, 608, 872
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 1 cut(s) 1069
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 268
XmnI GAANNNNTTC 2 cut(s) 392, 1034
XspI CTAG 4 cut(s) 248, 518, 680, 936
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.