RLG00000018756

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000727
Physical Location & Seq
Reverse (-)
35403366 .. 35406460
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018756

Sequence Viewer

Length: 1629 bp
ATGGGTTTGCTTCCTCATTCACCAAATCAAAAGCTAGTACGTTTCATTTTGATAGTGGAGATGAGAGATAGAGATATGAGGGCTGCTCGTACTTACAGACCAGCTTTTTCATTATCCCGGTTTCTAGTAGTGTTACTAGTAATACCTTTGCTCGTGTTGCTGTTAATCTTTCTGATACAGCCTCTGAGTTCAAGCTCTTCATCATTATCTGCAACTTGGATAGTTGGTAATTCTAGTACTTCCGGAAATTTTAGCTACTCTCTAGCTTTAACTGCAGCTCAAAATTGGCCTCAACCTCCAGCTGAAGCTCCACTTACTAGTTTTTTATATGGTAGTCCAAGTCCTGCTCCTGCCCCTCAAATATCAACTGGGGCTAGACAAGTTGGTGGTTCTAGAAGAGTAAAATCATGGAGGAGCATGAAGCTAGATAAGCTAGAAGCAAGTTTGGGCAAAGCAAGGTCTTCCATAAGAGAAGCCGCTGGTACATCACTAGCACGACTTAAAAACAAGATCAATTCGACATCAAAAACAGTGCAACTAGTACATGACGACGACCCCGACTATGTTCCTCATGGCCGCATATATCGGAACGCCCACGCCTTTCATAGGAGCTACCTATTAATGGAGAAGCTGTTCAAGATATACGTATATGAAGAAGGAGAGGTCCCACTGTTTCATAATGGTCCATGCAAGAGCATATATTCCTCAGAAGGAAGGTTCATTCATGAAATGGAGATGGGCAAATTGTACAGAACAAAAGACCCAGATGAAGCTCACGTTTACTTCATTCCAGTAAGTGTGGCCAGTCTGGTTCAGTACCTGTATGTCCCGGATTCAAAAGATCTAGATCCGATGAAGCGAGCCACCGTCGACTACGTTAAAGTCATTGCTGATAGGCACCCTTTCTGGAATAGAAGCCTTGGTGCTGATCATTTCATGCTTTCATGTCATGACTGGGGGCCAATGACGTCATCCTTTGTTCCAAATTTGTTCCACAAGTCCATTAGGGTTCTTTGCAATGCCAATACTTCTGAAGGATTTAATCCATCAAAAGATGCGTCGTTTCCCGAAATTAATCTTCTAACAGGTGAAATCTCAAGTCTAGGTGGTCAGCCTCCATCGACTCGAACTGTCCTCGCCTTTTTCGCCGGTCATCTTCATGGCCACATTAGGTACCTCCTTTTAAACGAATGGAAAGGCAAAGACCAAGATGTCCAAGTCTACGATGCGCTCCCAAAGAAAGTGTCCTATGAAAAAAAGTTGAAAAGTAGCAAGTTTTGCTTGTGCCCAAGTGGGTATGAAGTGGCAAGTCCAAGAGTGGTTGAAGCAATCTATGCCGAGTGTGTTCCGGTGTTGATTTCAGATGCTTATGTACCACCTTTCAGTGATGTTTTGAATTGGAAGTCATTTTCTGTTCAAATAGATGTGAAGAACATATCGGATATCAAGAACATATTGATGGGGATATCTCATAGGCAGTACCTAAGAATGCAAAGGAATGTGAAACAAGTGCAACGACATTTTGTGGTGAATGGACCTCCTAGGAGATATGATGTTTTCCACATGATTGTACACTCTATTTGGCTTAGAAGGTTAAATATTCGCGTTCATGATTTTCGGAACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

543

Amino Acids

61.44

Weight (kDa)

9.57

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 209 - 487 3.4e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1211
AatII GACGTC 1 cut(s) 971
Acc65I GGTACC 1 cut(s) 1173
AccB1I GGYRCC 2 cut(s) 897, 1173
AccI GTMKAC 2 cut(s) 870, 1221
AccII CGCG 1 cut(s) 1605
AccIII TCCGGA 1 cut(s) 242
AciI CCGC 2 cut(s) 477, 577
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 3 cut(s) 574, 801, 1162
AcsI RAATTY 2 cut(s) 247, 985
AcuI CTGAAG 2 cut(s) 324, 1053
AcyI GRCGYC 1 cut(s) 968
AfiI CCNNNNNNNGG 2 cut(s) 606, 622
AgsI TTSAA 7 cut(s) 192, 637, 837, 1264, 1325, 1396, 1418
AhlI ACTAGT 3 cut(s) 136, 317, 538
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AlwI GGATC 1 cut(s) 842
AlwNI CAGNNNCTG 2 cut(s) 184, 820
Aor13HI TCCGGA 1 cut(s) 242
AoxI GGCC 5 cut(s) 287, 574, 801, 959, 1162
ApeKI GCWGC 2 cut(s) 83, 275
ApoI RAATTY 2 cut(s) 247, 985
ArsI GACNNNNNNTTYG 4 cut(s) 1043, 1075, 1229, 1261
AseI ATTAAT 2 cut(s) 620, 1074
Asp700I GAANNNNTTC 1 cut(s) 632
Asp718I GGTACC 1 cut(s) 1173
AspA2I CCTAGG 1 cut(s) 1541
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 4 cut(s) 664, 683, 959, 1535
AsuC2I CCSGG 2 cut(s) 118, 830
AsuHPI GGTGA 3 cut(s) 12, 1100, 1540
AvaII GGWCC 3 cut(s) 664, 683, 1535
AvrII CCTAGG 1 cut(s) 1541
BaeGI GKGCMC 1 cut(s) 1289
BalI TGGCCA 2 cut(s) 803, 1164
BanI GGYRCC 2 cut(s) 897, 1173
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 70, 287
BccI CCATC 4 cut(s) 730, 1054, 1126, 1453
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 2 cut(s) 118, 830
BcuI ACTAGT 3 cut(s) 136, 317, 538
BfmI CTRYAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 841
BisI GCNGC 4 cut(s) 84, 276, 477, 577
BlnI CCTAGG 1 cut(s) 1541
BlsI GCNGC 4 cut(s) 85, 277, 478, 578
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 118, 830
Bme18I GGWCC 3 cut(s) 664, 683, 1535
BmgT120I GGNCC 4 cut(s) 664, 683, 959, 1535
BmiI GGNNCC 5 cut(s) 666, 899, 960, 1175, 1622
BmrFI CCNGG 2 cut(s) 118, 830
BmrI ACTGGG 2 cut(s) 378, 964
BmsI GCATC 3 cut(s) 1045, 1216, 1354
BmuI ACTGGG 2 cut(s) 378, 964
BpiI GAAGAC 1 cut(s) 453
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 1081
BpuMI CCSGG 2 cut(s) 118, 830
BsaAI YACGTR 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 968
BsaJI CCNNGG 2 cut(s) 919, 1541
BsaWI WCCGGW 2 cut(s) 242, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 622
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 4 cut(s) 373, 791, 804, 959
Bse3DI GCAATG 2 cut(s) 885, 1024
Bse8I GATNNNNATC 1 cut(s) 846
BseAI TCCGGA 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 919, 1541
BseGI GGATG 1 cut(s) 971
BseJI GATNNNNATC 1 cut(s) 846
BseLI CCNNNNNNNGG 2 cut(s) 606, 622
BseMI GCAATG 2 cut(s) 885, 1024
BseMII CTCAG 2 cut(s) 176, 720
BseNI ACTGG 4 cut(s) 373, 791, 804, 959
BseRI GAGGAG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 1289
BseXI GCAGC 2 cut(s) 70, 287
Bsh1236I CGCG 1 cut(s) 1605
BshFI GGCC 5 cut(s) 289, 576, 803, 961, 1164
BshNI GGYRCC 2 cut(s) 897, 1173
BsiSI CCGG 5 cut(s) 118, 243, 830, 1149, 1349
BslFI GGGAC 2 cut(s) 650, 812
BslI CCNNNNNNNGG 2 cut(s) 606, 622
BsmFI GGGAC 2 cut(s) 650, 812
BsmI GAATGC 1 cut(s) 1494
BsnI GGCC 5 cut(s) 289, 576, 803, 961, 1164
Bsp1286I GDGCHC 1 cut(s) 1289
Bsp13I TCCGGA 1 cut(s) 242
Bsp1407I TGTACA 2 cut(s) 747, 1570
Bsp143I GATC 4 cut(s) 510, 841, 847, 928
BspACI CCGC 2 cut(s) 477, 577
BspANI GGCC 5 cut(s) 289, 576, 803, 961, 1164
BspCNI CTCAG 2 cut(s) 177, 719
BspEI TCCGGA 1 cut(s) 242
BspFNI CGCG 1 cut(s) 1605
BspHI TCATGA 3 cut(s) 724, 949, 1609
BspLI GGNNCC 5 cut(s) 666, 899, 960, 1175, 1622
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 842
BspQI GCTCTTC 1 cut(s) 202
BspT107I GGYRCC 2 cut(s) 897, 1173
BsrDI GCAATG 2 cut(s) 885, 1024
BsrFI RCCGGY 1 cut(s) 1148
BsrGI TGTACA 2 cut(s) 747, 1570
BsrI ACTGG 4 cut(s) 373, 791, 804, 959
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 2 cut(s) 919, 1541
BssMI GATC 4 cut(s) 510, 841, 847, 928
BssNI GRCGYC 1 cut(s) 968
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 2 cut(s) 919, 1541
Bst2BI CACGAG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 532, 672, 868, 1132
Bst6I CTCTTC 2 cut(s) 202, 391
BstACI GRCGYC 1 cut(s) 968
BstAPI GCANNNNNTGC 2 cut(s) 1278, 1334
BstAUI TGTACA 2 cut(s) 747, 1570
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 4 cut(s) 185, 706, 1484, 1586
BstENI CCTNNNNNAGG 1 cut(s) 604
BstF5I GGATG 1 cut(s) 971
BstFNI CGCG 1 cut(s) 1605
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 4 cut(s) 513, 844, 850, 931
BstMBI GATC 4 cut(s) 510, 841, 847, 928
BstMWI GCNNNNNNNGC 6 cut(s) 157, 272, 430, 1145, 1278, 1334
BstSCI CCNGG 2 cut(s) 116, 828
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 1289
BstSNI TACGTA 1 cut(s) 646
BstUI CGCG 1 cut(s) 1605
BstV1I GCAGC 2 cut(s) 70, 287
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 841, 847
BstYI RGATCY 2 cut(s) 841, 847
BsuRI GGCC 5 cut(s) 289, 576, 803, 961, 1164
BtsCI GGATG 1 cut(s) 971
BtsIMutI CAGTG 3 cut(s) 537, 668, 1390
Cac8I GCNNGC 1 cut(s) 861
CaiI CAGNNNCTG 2 cut(s) 184, 820
CciI TCATGA 3 cut(s) 724, 949, 1609
CfoI GCGC 1 cut(s) 1231
Cfr10I RCCGGY 1 cut(s) 1148
Cfr13I GGNCC 4 cut(s) 664, 683, 959, 1535
CseI GACGC 1 cut(s) 1047
DdeI CTNAG 4 cut(s) 185, 706, 1484, 1586
DpnI GATC 4 cut(s) 512, 843, 849, 930
DpnII GATC 4 cut(s) 510, 841, 847, 928
DraI TTTAAA 1 cut(s) 1185
DrdI GACNNNNNNGTC 1 cut(s) 1211
DseDI GACNNNNNNGTC 1 cut(s) 1211
EaeI YGGCCR 3 cut(s) 574, 801, 1162
Eam1104I CTCTTC 2 cut(s) 202, 391
EarI CTCTTC 2 cut(s) 202, 391
Eco105I TACGTA 1 cut(s) 646
Eco130I CCWWGG 2 cut(s) 919, 1541
Eco32I GATATC 2 cut(s) 1444, 1467
Eco47I GGWCC 3 cut(s) 664, 683, 1535
Eco57I CTGAAG 2 cut(s) 324, 1053
EcoNI CCTNNNNNAGG 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 664
EcoRV GATATC 2 cut(s) 1444, 1467
EcoT14I CCWWGG 2 cut(s) 919, 1541
ErhI CCWWGG 2 cut(s) 919, 1541
FalI AAGNNNNNCTT 4 cut(s) 297, 329, 1265, 1297
FaqI GGGAC 2 cut(s) 650, 812
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 2 cut(s) 870, 1221
Fnu4HI GCNGC 4 cut(s) 84, 276, 477, 577
FokI GGATG 1 cut(s) 958
Fsp4HI GCNGC 4 cut(s) 84, 276, 477, 577
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 4 cut(s) 84, 276, 477, 577
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 5 cut(s) 289, 576, 803, 961, 1164
HapII CCGG 5 cut(s) 118, 243, 830, 1149, 1349
HgaI GACGC 1 cut(s) 1047
HhaI GCGC 1 cut(s) 1231
Hin1I GRCGYC 1 cut(s) 968
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HinfI GANTC 2 cut(s) 833, 1123
HpaII CCGG 5 cut(s) 118, 243, 830, 1149, 1349
HphI GGTGA 3 cut(s) 12, 1100, 1540
Hpy166II GTNNAC 4 cut(s) 781, 871, 1222, 1573
Hpy188I TCNGA 9 cut(s) 174, 186, 588, 709, 852, 1033, 1363, 1441, 1620
Hpy8I GTNNAC 4 cut(s) 781, 871, 1222, 1573
Hpy99I CGWCG 3 cut(s) 554, 872, 1063
HpyAV CCTTC 5 cut(s) 650, 704, 708, 1028, 1584
HpyCH4III ACNGT 4 cut(s) 532, 672, 868, 1132
HpyCH4IV ACGT 5 cut(s) 40, 645, 777, 876, 968
HpyCH4V TGCA 7 cut(s) 212, 275, 535, 690, 1017, 1492, 1513
HpyF10VI GCNNNNNNNGC 6 cut(s) 157, 272, 430, 1145, 1278, 1334
HpyF3I CTNAG 4 cut(s) 185, 706, 1484, 1586
HpySE526I ACGT 5 cut(s) 40, 645, 777, 876, 968
Hsp92I GRCGYC 1 cut(s) 968
HspAI GCGC 1 cut(s) 1229
Kpn2I TCCGGA 1 cut(s) 242
KpnI GGTACC 1 cut(s) 1177
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 4 cut(s) 510, 841, 847, 928
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 5 cut(s) 313, 352, 414, 609, 1236
Lsp1109I GCAGC 2 cut(s) 70, 287
LweI GCATC 3 cut(s) 1045, 1216, 1354
MaeII ACGT 5 cut(s) 40, 645, 777, 876, 968
MaeIII GTNAC 1 cut(s) 132
MalI GATC 4 cut(s) 512, 843, 849, 930
MboI GATC 4 cut(s) 510, 841, 847, 928
MboII GAAGA 7 cut(s) 189, 408, 453, 665, 1070, 1148, 1441
MflI RGATCY 2 cut(s) 841, 847
MhlI GDGCHC 1 cut(s) 1289
MlsI TGGCCA 2 cut(s) 803, 1164
MluCI AATT 8 cut(s) 229, 247, 283, 514, 743, 985, 1071, 1396
MluNI TGGCCA 2 cut(s) 803, 1164
MlyI GAGTC 1 cut(s) 1117
Mox20I TGGCCA 2 cut(s) 803, 1164
MroI TCCGGA 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 632
MscI TGGCCA 2 cut(s) 803, 1164
MseI TTAA 9 cut(s) 164, 269, 501, 620, 879, 1041, 1074, 1184, 1595
MslI CAYNNNNRTG 2 cut(s) 1158, 1457
Msp20I TGGCCA 2 cut(s) 803, 1164
MspA1I CMGCKG 2 cut(s) 302, 479
MspI CCGG 5 cut(s) 118, 243, 830, 1149, 1349
MspR9I CCNGG 2 cut(s) 118, 830
Mva1269I GAATGC 1 cut(s) 1494
MvnI CGCG 1 cut(s) 1605
MwoI GCNNNNNNNGC 6 cut(s) 157, 272, 430, 1145, 1278, 1334
NciI CCSGG 2 cut(s) 118, 830
NdeII GATC 4 cut(s) 510, 841, 847, 928
NlaIV GGNNCC 5 cut(s) 666, 899, 960, 1175, 1622
NmeAIII GCCGAG 1 cut(s) 1363
PagI TCATGA 3 cut(s) 724, 949, 1609
PciSI GCTCTTC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PctI GAATGC 1 cut(s) 1494
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 833
PfoI TCCNGGA 1 cut(s) 828
PkrI GCNGC 4 cut(s) 85, 277, 478, 578
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
Ppu21I YACGTR 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 664
PshBI ATTAAT 2 cut(s) 620, 1074
Psp5II RGGWCCY 1 cut(s) 664
PspN4I GGNNCC 5 cut(s) 666, 899, 960, 1175, 1622
PspPI GGNCC 4 cut(s) 664, 683, 959, 1535
PspPPI RGGWCCY 1 cut(s) 664
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 184, 820
PsuI RGATCY 2 cut(s) 841, 847
PvuII CAGCTG 1 cut(s) 302
RseI CAYNNNNRTG 2 cut(s) 1158, 1457
SalI GTCGAC 1 cut(s) 869
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 9 cut(s) 164, 269, 501, 620, 879, 1041, 1074, 1184, 1595
SatI GCNGC 4 cut(s) 84, 276, 477, 577
Sau3AI GATC 4 cut(s) 510, 841, 847, 928
Sau96I GGNCC 4 cut(s) 664, 683, 959, 1535
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 2 cut(s) 118, 830
SduI GDGCHC 1 cut(s) 1289
SfaNI GCATC 3 cut(s) 1045, 1216, 1354
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 3 cut(s) 664, 683, 1535
SmiMI CAYNNNNRTG 2 cut(s) 1158, 1457
SmlI CTYRAG 1 cut(s) 1096
SmoI CTYRAG 1 cut(s) 1096
SnaBI TACGTA 1 cut(s) 646
SpeI ACTAGT 3 cut(s) 136, 317, 538
Sse9I AATT 8 cut(s) 229, 247, 283, 514, 743, 985, 1071, 1396
SsiI CCGC 2 cut(s) 477, 577
SspI AATATT 1 cut(s) 1600
StyD4I CCNGG 2 cut(s) 116, 828
StyI CCWWGG 2 cut(s) 919, 1541
TaaI ACNGT 4 cut(s) 532, 672, 868, 1132
TaiI ACGT 5 cut(s) 43, 648, 780, 879, 971
TaqI TCGA 4 cut(s) 518, 870, 1121, 1126
TasI AATT 8 cut(s) 229, 247, 283, 514, 743, 985, 1071, 1396
TatI WGTACW 4 cut(s) 236, 541, 747, 1570
TauI GCSGC 2 cut(s) 479, 579
TfiI GAWTC 1 cut(s) 833
Tru1I TTAA 9 cut(s) 164, 269, 501, 620, 879, 1041, 1074, 1184, 1595
Tru9I TTAA 9 cut(s) 164, 269, 501, 620, 879, 1041, 1074, 1184, 1595
TscAI CASTG 3 cut(s) 537, 675, 1390
TseI GCWGC 2 cut(s) 83, 275
TspRI CASTG 3 cut(s) 537, 675, 1390
VpaK11BI GGWCC 3 cut(s) 664, 683, 1535
VspI ATTAAT 2 cut(s) 620, 1074
XagI CCTNNNNNAGG 1 cut(s) 604
XapI RAATTY 2 cut(s) 247, 985
XbaI TCTAGA 2 cut(s) 392, 844
XmaJI CCTAGG 1 cut(s) 1541
XmiI GTMKAC 2 cut(s) 870, 1221
XmnI GAANNNNTTC 1 cut(s) 632
ZraI GACGTC 1 cut(s) 969
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.