RchiOBHm_Chr6g0246291

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000727
Physical Location & Seq
Reverse (-)
2000091 .. 2002493
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22076

Sequence Viewer

Length: 1338 bp
ATGGTGAGCCACAGAGGAGGTGGTGGTGGTGCGACTACTACCTCCAAAGCCCACCGCCTGGTGTTCATTCTCCCAATCATTATCATCTTTGGATTGCTTTCATGGGTTTTCACTTCTCACGTGGTGTCTACTCCAAAGTCTTCAACAAAGATTGGATCCAGTTTTGTTGTTGGTGTTGAAGTGTACGGTACTACACTGGAAAAAAATCACTCTCAGATCATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGTCTACGACGAGCTCGTGTCGCGATTAAGTTGGGAAACCGATCACAAGATTCCGACTACATCCCTCATGGACCAATGTATTGGAATGCTAATGCATTTCACAGGAGCTATATTGAAATGGAGAAACAGTTCAAGGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGCCCTTGCAAAAGCATATATTCCATGGAGGGGAACTTTATACATGAATTGGAGGTGAATAAGCAATTTCGGACGCTAGATCCTGATAAGGCACATGTTTACTTTCTTCCCTTCAGTGTGACAATGTTGGTTAAGTATGTTTATGTGCCCAACTCACATGATTTCGGTCCAATCAAGCAAACAGTGAGAGACTATGCGAATCTTATCTCCACCAAGTACCCGTTCTGGAATAGAGGCCTAGCAGCAGATCACTTTATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAGTCTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCATTTCCGGAGATCAACCTTCCAAATGGAAACACACATGGTTTAATTGGTGGACCTTCTCCAAGGGTACGTACTGTGCTAGCTTTTTTTGCAGGAGGACTTCATGGCCCTATTAGGCCTCTTTTGCTGGAGTTGTGGGAGAACAAAGATCAGGACATGATGGTGCACCAGTACCTTCCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAATCATTATGTGGCCCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGATTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCCCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAATGTCAGAGTTCATGATGGCCTGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

445

Amino Acids

50.85

Weight (kDa)

9.55

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 129 - 356 6.3e-34 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AccB7I CCANNNNNTGG 1 cut(s) 58
AccI GTMKAC 2 cut(s) 128, 268
AccII CGCG 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 1 cut(s) 55
AclWI GGATC 3 cut(s) 150, 163, 515
AcsI RAATTY 1 cut(s) 1150
AcuI CTGAAG 2 cut(s) 538, 813
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 6 cut(s) 185, 190, 659, 888, 892, 992
AfiI CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
AflIII ACRYGT 1 cut(s) 535
AhdI GACNNNNNGTC 1 cut(s) 1307
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 3 cut(s) 278, 372, 902
AluI AGCT 3 cut(s) 278, 372, 902
Alw21I GWGCWC 2 cut(s) 280, 987
Alw26I GTCTC 1 cut(s) 624
Alw44I GTGCAC 1 cut(s) 983
AlwI GGATC 3 cut(s) 150, 163, 515
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 7 cut(s) 442, 676, 719, 925, 935, 1083, 1324
ApaLI GTGCAC 1 cut(s) 983
ApeKI GCWGC 1 cut(s) 683
ApoI RAATTY 1 cut(s) 1150
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 2 cut(s) 392, 1115
AspS9I GGNCC 7 cut(s) 335, 443, 608, 719, 872, 926, 1084
AsuHPI GGTGA 3 cut(s) 16, 508, 1106
AsuNHI GCTAGC 1 cut(s) 898
AvaII GGWCC 3 cut(s) 335, 608, 872
BaeGI GKGCMC 2 cut(s) 591, 987
BamHI GGATCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 280
BauI CACGAG 1 cut(s) 279
BbrPI CACGTG 1 cut(s) 121
BbsI GAAGAC 3 cut(s) 132, 1258, 1306
Bbv12I GWGCWC 2 cut(s) 280, 987
BbvI GCAGC 1 cut(s) 695
BccI CCATC 2 cut(s) 973, 1316
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 1 cut(s) 1155
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 4 cut(s) 248, 518, 680, 899
BfuI GTATCC 1 cut(s) 1155
BisI GCNGC 1 cut(s) 684
BlsI GCNGC 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 3 cut(s) 335, 608, 872
BmeRI GACNNNNNGTC 1 cut(s) 1307
BmgT120I GGNCC 7 cut(s) 335, 443, 608, 719, 872, 926, 1084
BmiI GGNNCC 3 cut(s) 157, 720, 1086
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 1087
BmtI GCTAGC 1 cut(s) 902
BpiI GAAGAC 3 cut(s) 132, 1258, 1306
BplI GAGNNNNNCTC 2 cut(s) 1226, 1258
BpmI CTGGAG 2 cut(s) 278, 968
BsaAI YACGTR 2 cut(s) 121, 890
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 465, 881
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
Bse1I ACTGG 4 cut(s) 159, 201, 988, 1112
Bse3DI GCAATG 1 cut(s) 784
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 465, 881
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 2 cut(s) 227, 1309
BseNI ACTGG 4 cut(s) 159, 201, 988, 1112
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 591, 987
BseXI GCAGC 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 7 cut(s) 444, 678, 721, 927, 937, 1085, 1326
BsiHKAI GWGCWC 2 cut(s) 280, 987
BsiSI CCGG 1 cut(s) 827
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 4 cut(s) 58, 471, 715, 1000
BsmAI GTCTC 1 cut(s) 624
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 2 cut(s) 355, 1203
BsnI GGCC 7 cut(s) 444, 678, 721, 927, 937, 1085, 1326
Bsp1286I GDGCHC 3 cut(s) 280, 591, 987
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
Bsp19I CCATGG 1 cut(s) 465
Bsp68I TCGCGA 1 cut(s) 287
BspACI CCGC 1 cut(s) 55
BspANI GGCC 7 cut(s) 444, 678, 721, 927, 937, 1085, 1326
BspCNI CTCAG 2 cut(s) 226, 1308
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 287
BspHI TCATGA 2 cut(s) 1167, 1318
BspLI GGNNCC 3 cut(s) 157, 720, 1086
BspOI GCTAGC 1 cut(s) 902
BspPI GGATC 3 cut(s) 150, 163, 515
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 4 cut(s) 159, 201, 988, 1112
BssECI CCNNGG 2 cut(s) 465, 881
BssMI GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
BssNI GRCGYC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 2 cut(s) 465, 881
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 4 cut(s) 188, 393, 625, 895
BstACI GRCGYC 1 cut(s) 265
BstBAI YACGTR 2 cut(s) 121, 890
BstC8I GCNNGC 3 cut(s) 706, 900, 1328
BstDEI CTNAG 3 cut(s) 213, 1193, 1295
BstDSI CCRYGG 1 cut(s) 465
BstENI CCTNNNNNAGG 1 cut(s) 998
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 7 cut(s) 158, 219, 308, 523, 691, 834, 970
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
BstMWI GCNNNNNNNGC 4 cut(s) 262, 284, 908, 943
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 2 cut(s) 591, 987
BstSNI TACGTA 1 cut(s) 890
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 695
BstV2I GAAGAC 3 cut(s) 132, 1258, 1306
BstX2I RGATCY 2 cut(s) 155, 520
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 2 cut(s) 155, 520
BsuI GTATCC 1 cut(s) 1155
BsuRI GGCC 7 cut(s) 444, 678, 721, 927, 937, 1085, 1326
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 194, 562, 630
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 3 cut(s) 706, 900, 1328
CciI TCATGA 2 cut(s) 1167, 1318
Cfr13I GGNCC 7 cut(s) 335, 443, 608, 719, 872, 926, 1084
CseI GACGC 2 cut(s) 254, 523
Csp6I GTAC 6 cut(s) 184, 189, 658, 887, 891, 991
CviQI GTAC 6 cut(s) 184, 189, 658, 887, 891, 991
DdeI CTNAG 3 cut(s) 213, 1193, 1295
DpnI GATC 7 cut(s) 157, 218, 307, 522, 690, 833, 969
DpnII GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
DraIII CACNNNGTG 1 cut(s) 124
DriI GACNNNNNGTC 1 cut(s) 1307
Eam1105I GACNNNNNGTC 1 cut(s) 1307
Ecl136II GAGCTC 1 cut(s) 278
Eco105I TACGTA 1 cut(s) 890
Eco130I CCWWGG 2 cut(s) 465, 881
Eco147I AGGCCT 2 cut(s) 678, 937
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 3 cut(s) 335, 608, 872
Eco53kI GAGCTC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 538, 813
Eco72I CACGTG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 998
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 465, 881
EcoT22I ATGCAT 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 465, 881
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FaqI GGGAC 1 cut(s) 241
FblI GTMKAC 2 cut(s) 128, 268
Fnu4HI GCNGC 1 cut(s) 684
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 684
FspBI CTAG 4 cut(s) 248, 518, 680, 899
GluI GCNGC 1 cut(s) 684
GsuI CTGGAG 2 cut(s) 278, 968
HaeIII GGCC 7 cut(s) 444, 678, 721, 927, 937, 1085, 1326
HapII CCGG 1 cut(s) 827
HgaI GACGC 2 cut(s) 254, 523
Hin1I GRCGYC 1 cut(s) 265
HinfI GANTC 4 cut(s) 314, 640, 1213, 1302
HpaII CCGG 1 cut(s) 827
HphI GGTGA 3 cut(s) 16, 508, 1106
Hpy166II GTNNAC 6 cut(s) 129, 184, 269, 541, 872, 985
Hpy188I TCNGA 7 cut(s) 216, 319, 513, 793, 1104, 1298, 1313
Hpy188III TCNNGA 8 cut(s) 248, 286, 524, 667, 827, 971, 1168, 1319
Hpy8I GTNNAC 6 cut(s) 129, 184, 269, 541, 872, 985
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 8 cut(s) 410, 562, 788, 816, 848, 885, 1004, 1200
HpyCH4III ACNGT 4 cut(s) 188, 393, 625, 895
HpyCH4IV ACGT 2 cut(s) 120, 889
HpyCH4V TGCA 6 cut(s) 359, 450, 777, 911, 985, 1201
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 284, 908, 943
HpyF3I CTNAG 3 cut(s) 213, 1193, 1295
HpySE526I ACGT 2 cut(s) 120, 889
Hsp92I GRCGYC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 1 cut(s) 1087
MaeI CTAG 4 cut(s) 248, 518, 680, 899
MaeII ACGT 2 cut(s) 120, 889
MaeIII GTNAC 1 cut(s) 559
MalI GATC 7 cut(s) 157, 218, 307, 522, 690, 833, 969
MboI GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
MboII GAAGA 4 cut(s) 132, 539, 1258, 1311
MflI RGATCY 2 cut(s) 155, 520
MhlI GDGCHC 3 cut(s) 280, 591, 987
MluCI AATT 4 cut(s) 488, 506, 864, 1150
MlyI GAGTC 1 cut(s) 1296
MmeI TCCRAC 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 361
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 2 cut(s) 392, 1115
MseI TTAA 5 cut(s) 222, 291, 573, 863, 1137
MslI CAYNNNNRTG 1 cut(s) 980
MspI CCGG 1 cut(s) 827
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 2 cut(s) 355, 1203
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 4 cut(s) 262, 284, 908, 943
NcoI CCATGG 1 cut(s) 465
NdeII GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
NheI GCTAGC 1 cut(s) 898
NlaIV GGNNCC 3 cut(s) 157, 720, 1086
NmuCI GTSAC 1 cut(s) 559
NruI TCGCGA 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 539
PagI TCATGA 2 cut(s) 1167, 1318
PceI AGGCCT 2 cut(s) 678, 937
PciI ACATGT 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PctI GAATGC 2 cut(s) 355, 1203
PdmI GAANNNNTTC 2 cut(s) 392, 1115
PfeI GAWTC 3 cut(s) 314, 640, 1213
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 1 cut(s) 685
PleI GAGTC 1 cut(s) 1296
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 1 cut(s) 1296
Ppu21I YACGTR 2 cut(s) 121, 890
PscI ACATGT 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 1017
Psp124BI GAGCTC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 57
PspCI CACGTG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 157, 720, 1086
PspPI GGNCC 7 cut(s) 335, 443, 608, 719, 872, 926, 1084
PsuI RGATCY 2 cut(s) 155, 520
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 6 cut(s) 185, 190, 659, 888, 892, 992
RsaNI GTAC 6 cut(s) 184, 189, 658, 887, 891, 991
RseI CAYNNNNRTG 1 cut(s) 980
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 5 cut(s) 222, 291, 573, 863, 1137
SatI GCNGC 1 cut(s) 684
Sau3AI GATC 7 cut(s) 155, 216, 305, 520, 688, 831, 967
Sau96I GGNCC 7 cut(s) 335, 443, 608, 719, 872, 926, 1084
SchI GAGTC 1 cut(s) 1296
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 3 cut(s) 280, 591, 987
SfaNI GCATC 1 cut(s) 1087
SinI GGWCC 3 cut(s) 335, 608, 872
SmiMI CAYNNNNRTG 1 cut(s) 980
SnaBI TACGTA 1 cut(s) 890
Sse9I AATT 4 cut(s) 488, 506, 864, 1150
SseBI AGGCCT 2 cut(s) 678, 937
SsiI CCGC 1 cut(s) 55
SspMI CTAG 4 cut(s) 248, 518, 680, 899
SstI GAGCTC 1 cut(s) 280
StuI AGGCCT 2 cut(s) 678, 937
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 2 cut(s) 465, 881
TaaI ACNGT 4 cut(s) 188, 393, 625, 895
TaiI ACGT 2 cut(s) 123, 892
TaqI TCGA 1 cut(s) 761
TaqII GACCGA 1 cut(s) 596
TasI AATT 4 cut(s) 488, 506, 864, 1150
TfiI GAWTC 3 cut(s) 314, 640, 1213
Tru1I TTAA 5 cut(s) 222, 291, 573, 863, 1137
Tru9I TTAA 5 cut(s) 222, 291, 573, 863, 1137
TscAI CASTG 3 cut(s) 201, 562, 630
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 6 cut(s) 55, 90, 425, 501, 911, 1307
TspRI CASTG 3 cut(s) 201, 562, 630
Van91I CCANNNNNTGG 1 cut(s) 58
VneI GTGCAC 1 cut(s) 983
VpaK11BI GGWCC 3 cut(s) 335, 608, 872
VspI ATTAAT 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 998
XapI RAATTY 1 cut(s) 1150
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 2 cut(s) 128, 268
XmnI GAANNNNTTC 2 cut(s) 392, 1115
XspI CTAG 4 cut(s) 248, 518, 680, 899
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.