pycom15g12460

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000727
Physical Location & Seq
Forward (+)
8522765 .. 8525687
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12460.1

Sequence Viewer

Length: 450 bp
ATGGAGAAGGGCAAATTGTACCGTACAAAAGACCCTCACAAGGCACTTGTTTATTTCCTTCCATTCAGTGTGGTTAACATGGTTCAGTATATCTACATGCCTGAAACCTTTGATCGAAGTGGCATGAAGCTTGCTGTGGTCGACTACATCAATCTCATCTCTCACAAACATCCCTTCTGGAATCGAAGCCTCGGTGCCGATCATTTCATGTTGTCCTGTCACGATTGGGGACCAACTACGACGTCCTTTGTCCCCGACTTATTCCACAACTCCATCAGAGTTTTGTGCAATGCAAACACTTCAGAAGGATTCGATCCGTCGAAAGATGCGTCATTTCCAGAGATTAATTTGAAAACATCGGAGATGCCAAGAATTGGCGGTCAGCCTCCAGACTATGTCGAATCGATCAACACTAGCTTTCTTTGCAGGGCGTCTACACGGCCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

150

Amino Acids

17.05

Weight (kDa)

7.05

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 7 - 117 1.5e-13 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 2 cut(s) 141, 434
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 285
AcyI GRCGYC 2 cut(s) 242, 431
AfaI GTAC 2 cut(s) 20, 25
AfiI CCNNNNNNNGG 2 cut(s) 40, 374
AgsI TTSAA 1 cut(s) 352
AluBI AGCT 2 cut(s) 130, 417
AluI AGCT 2 cut(s) 130, 417
AlwI GGATC 1 cut(s) 308
AoxI GGCC 1 cut(s) 440
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
AseI ATTAAT 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 194
BccI CCATC 1 cut(s) 281
BfaI CTAG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 196, 231
BmsI GCATC 2 cut(s) 316, 354
BpmI CTGGAG 1 cut(s) 372
Bsa29I ATCGAT 1 cut(s) 404
BsaHI GRCGYC 2 cut(s) 242, 431
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 374
Bse3DI GCAATG 1 cut(s) 295
BseCI ATCGAT 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 40, 374
BseMI GCAATG 1 cut(s) 295
BshFI GGCC 1 cut(s) 442
BshNI GGYRCC 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 404
BslFI GGGAC 2 cut(s) 236, 243
BslI CCNNNNNNNGG 2 cut(s) 40, 374
BsmFI GGGAC 2 cut(s) 236, 243
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 112, 199, 313, 405
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 442
BspDI ATCGAT 1 cut(s) 404
BspLI GGNNCC 2 cut(s) 196, 231
BspPI GGATC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 4 cut(s) 112, 199, 313, 405
BssNI GRCGYC 2 cut(s) 242, 431
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 2 cut(s) 242, 431
BstC8I GCNNGC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 4 cut(s) 115, 202, 316, 408
BstMBI GATC 4 cut(s) 112, 199, 313, 405
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 404
BsuRI GGCC 1 cut(s) 442
BsuTUI ATCGAT 1 cut(s) 404
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 404
CseI GACGC 2 cut(s) 318, 420
Csp6I GTAC 2 cut(s) 19, 24
CviAII CATG 4 cut(s) 79, 97, 124, 208
CviJI RGCY 5 cut(s) 130, 189, 385, 417, 442
CviKI_1 RGCY 5 cut(s) 130, 189, 385, 417, 442
CviQI GTAC 2 cut(s) 19, 24
DpnI GATC 4 cut(s) 114, 201, 315, 407
DpnII GATC 4 cut(s) 112, 199, 313, 405
EaeI YGGCCR 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 285
FaeI CATG 4 cut(s) 82, 100, 127, 211
FaiI YATR 6 cut(s) 80, 90, 98, 125, 209, 396
FaqI GGGAC 2 cut(s) 236, 243
FatI CATG 4 cut(s) 78, 96, 123, 207
FblI GTMKAC 2 cut(s) 141, 434
FokI GGATG 1 cut(s) 156
FspBI CTAG 1 cut(s) 414
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 442
HgaI GACGC 2 cut(s) 318, 420
Hin1I GRCGYC 2 cut(s) 242, 431
Hin1II CATG 4 cut(s) 82, 100, 127, 211
HincII GTYRAC 2 cut(s) 76, 142
HindII GTYRAC 2 cut(s) 76, 142
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 181, 309, 401
HpaI GTTAAC 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 76, 142, 435
Hpy188I TCNGA 3 cut(s) 278, 304, 361
Hpy188III TCNNGA 4 cut(s) 178, 221, 338, 389
Hpy8I GTNNAC 3 cut(s) 76, 142, 435
Hpy99I CGWCG 2 cut(s) 244, 322
HpyAV CCTTC 3 cut(s) 68, 184, 299
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 288, 293, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 2 cut(s) 242, 431
Hsp92II CATG 4 cut(s) 82, 100, 127, 211
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 4 cut(s) 112, 199, 313, 405
LpnPI CCDG 6 cut(s) 114, 163, 229, 351, 402, 412
LweI GCATC 2 cut(s) 316, 354
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 218
MalI GATC 4 cut(s) 114, 201, 315, 407
MboI GATC 4 cut(s) 112, 199, 313, 405
MluCI AATT 3 cut(s) 14, 346, 372
MnlI CCTC 3 cut(s) 45, 200, 396
MseI TTAA 2 cut(s) 75, 345
MwoI GCNNNNNNNGC 1 cut(s) 423
NdeII GATC 4 cut(s) 112, 199, 313, 405
NlaIII CATG 4 cut(s) 82, 100, 127, 211
NlaIV GGNNCC 2 cut(s) 196, 231
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 3 cut(s) 181, 309, 401
PflFI GACNNNGTC 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 196, 231
PspPI GGNCC 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 395
RsaI GTAC 2 cut(s) 20, 25
RsaNI GTAC 2 cut(s) 19, 24
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 75, 345
Sau3AI GATC 4 cut(s) 112, 199, 313, 405
Sau96I GGNCC 1 cut(s) 230
SetI ASST 4 cut(s) 110, 132, 245, 419
SfaNI GCATC 2 cut(s) 316, 354
SinI GGWCC 1 cut(s) 230
Sse9I AATT 3 cut(s) 14, 346, 372
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 245
TaqI TCGA 7 cut(s) 115, 141, 184, 312, 320, 399, 404
TasI AATT 3 cut(s) 14, 346, 372
TfiI GAWTC 3 cut(s) 181, 309, 401
Tru1I TTAA 2 cut(s) 75, 345
Tru9I TTAA 2 cut(s) 75, 345
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 140, 196
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 395
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 230
VspI ATTAAT 1 cut(s) 345
XceI RCATGY 1 cut(s) 100
XmiI GTMKAC 2 cut(s) 141, 434
XspI CTAG 1 cut(s) 414
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.