Rroxscaffold_7G00217220

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000727
Physical Location & Seq
Forward (+)
67718478 .. 67721085
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217220.1

Sequence Viewer

Length: 1551 bp
ATGAAGCCTCTCAACAACAAGCCATCTTTGTTTTCACCATTTTGGTCATCTTCTACTTCTTCTTCTTCGGTTTTGATTCTAGTGCTTGTAGCTCTCATTTGCACGTTGGGCGTCACAAGTTCGTTTTCATGGTCATGGAGAGTTGGTAACGTACTGGGTACTGACTACTCTTCATCACTAGCTTTCTCAACAAAAGCAAGGCCTAGTTCTCAAGTAGTGCGTGAGGAAGCGGCAGCAGAAGCTCATCCTATTGTCAGTCCTTCATCGAATGATTCAGAACCAAATGAAACAGTAGAGAAACAAGAGGTAGTGTTGAATGATAAAGAATTTGGTGAAATTAATGCTACTTCTGCATCTGAAACAATAAGTATAAAAAGATACAGCAGGTTAGAGAAACTTGAAGCAAGTTTGGCTGGAGTTCGGGCATCCATAAGAGAAGCTGCTCGAGTACGAAATCTGACTTCTACCCATGAAGATCCAGACTATGTTCCTCAAGGTCCAATATATAGAAATGCAAATGCTTTTCACAGGAGTTACTTGGAGATGGAAAGGCTGTTCAAGATATATGTATATCAAGAAGGAGATCCACCCATATTTCATAATGGTCCTTGCAAGAGCATATATTCTACAGAGGGAAGGTTCATTCATGAAATGGAAATGGACAATACTTATAGGACCACAAACCCAGACGATGCCCTTGTTTATTTTCTTCCATTCAGTGTGGTGATGTTGGTTCAGTACCTCTATGTGGCCGAGTCCCATGACACTGAGTCCATTGGTCGTGCTGTGGTTGACTATGTCAATGTCATCTCTGATAAACATCCCTTTTGGAATCGAAGCCTTGGTGCTGACCACTTTATGCTTTCCTGCCATGATTGGGGGCCTCGCACATCTTTTTATGTTCCTCAGCTATACCACAAGTCCATAAGGGTACTATGCAATGCAAACACTTCGGAAGGATTCAATCCTTCCAAAGATGTGTCATTTCCAGAAATCCATCTCCGAACTGGAGAAACGAAAGGACTTCTCGGTGGTCTCTCCCCCTCTCGCCGGTCAATTCTCGCCTTCTTTGCAGGCCGGCTGCATGGCCACATAAGGTACCTGCTTTTAAATGAATGGAAAGAAAAGGACCAAGATGTGCAAGTTTATGACCAACTTCCCCATGGAGTATCCTATGAGTCAATGTTAAAGCAGAGCAAGTTCTGCTTGTGCCCCAGCGGCTACGAAGTGGCGAGCCCAAGAATTGTAGAAGCCATCTACGCAGAATGCGTGCCGGTCTTGATTTCGGATAATTATGTTCCACCGTTCAGTGATGTTTTAGACTGGAAGTCATTTTCAGTCCAAGTACAAGTGAAGGATATACCAAATATCAAAACAATACTAATGGGAATATCTCAGAGCCAGTACTTGAGAATGCATAGGAGAGTGAAGCTGGTGCAGAGGCATTTTGTGGTGAATGGACCTTCCAAGAGATATGACGTTTTCAATATGATTGTTCATTCTATTTGGCTCAGGAGGTTGAATATCCGCATTGAGGATCAGGTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

516

Amino Acids

58.67

Weight (kDa)

6.64

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 183 - 462 9.5e-62 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 375, 1110
Acc65I GGTACC 1 cut(s) 1098
AccB1I GGYRCC 1 cut(s) 1098
AciI CCGC 3 cut(s) 230, 1218, 1528
AclWI GGATC 3 cut(s) 470, 578, 1545
AcoI YGGCCR 2 cut(s) 750, 1087
AcsI RAATTY 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 8 cut(s) 153, 160, 450, 740, 933, 1100, 1347, 1406
AfiI CCNNNNNNNGG 4 cut(s) 748, 877, 1050, 1534
AgsI TTSAA 6 cut(s) 316, 401, 559, 964, 1486, 1522
AhdI GACNNNNNGTC 2 cut(s) 769, 1327
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
AluBI AGCT 6 cut(s) 92, 182, 242, 440, 910, 1432
AluI AGCT 6 cut(s) 92, 182, 242, 440, 910, 1432
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 3 cut(s) 470, 578, 1545
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 5 cut(s) 200, 750, 881, 1075, 1087
ApeKI GCWGC 3 cut(s) 233, 440, 1081
ApoI RAATTY 1 cut(s) 326
AseI ATTAAT 1 cut(s) 339
Asp718I GGTACC 1 cut(s) 1098
AspS9I GGNCC 6 cut(s) 497, 605, 675, 881, 1129, 1460
AsuHPI GGTGA 4 cut(s) 27, 344, 736, 1465
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 5 cut(s) 497, 605, 675, 1129, 1460
BaeGI GKGCMC 1 cut(s) 1214
BalI TGGCCA 1 cut(s) 1089
BanI GGYRCC 1 cut(s) 1098
BanII GRGCYC 1 cut(s) 1238
BbvCI CCTCAGC 1 cut(s) 906
BbvI GCAGC 3 cut(s) 245, 427, 1068
BccI CCATC 4 cut(s) 31, 538, 1005, 1262
BcgI CGANNNNNNTGC 2 cut(s) 933, 967
BciVI GTATCC 1 cut(s) 1180
BcoDI GTCTC 1 cut(s) 1040
BfaI CTAG 3 cut(s) 80, 179, 204
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 2 cut(s) 375, 1110
BfuI GTATCC 1 cut(s) 1180
BglI GCCNNNNNGGC 1 cut(s) 1218
BisI GCNGC 5 cut(s) 231, 234, 441, 1082, 1219
BlsI GCNGC 5 cut(s) 232, 235, 442, 1083, 1220
BmcAI AGTACT 1 cut(s) 1406
Bme18I GGWCC 5 cut(s) 497, 605, 675, 1129, 1460
BmeRI GACNNNNNGTC 2 cut(s) 769, 1327
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 6 cut(s) 497, 605, 675, 881, 1129, 1460
BmiI GGNNCC 2 cut(s) 882, 1100
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 362, 434, 682
BmuI ACTGGG 1 cut(s) 164
BpmI CTGGAG 2 cut(s) 435, 1029
Bpu10I CCTNAGC 2 cut(s) 906, 1511
BpuEI CTTGAG 3 cut(s) 195, 477, 1429
BsaBI GATNNNNATC 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 2 cut(s) 841, 1162
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 4 cut(s) 748, 877, 1050, 1534
Bse118I RCCGGY 3 cut(s) 1050, 1077, 1273
Bse1I ACTGG 4 cut(s) 159, 1012, 1328, 1402
Bse3DI GCAATG 1 cut(s) 946
Bse8I GATNNNNATC 1 cut(s) 819
BseDI CCNNGG 2 cut(s) 841, 1162
BseGI GGATG 3 cut(s) 244, 425, 820
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 4 cut(s) 748, 877, 1050, 1534
BseMI GCAATG 1 cut(s) 946
BseMII CTCAG 4 cut(s) 759, 920, 1409, 1525
BseNI ACTGG 4 cut(s) 159, 1012, 1328, 1402
BseSI GKGCMC 1 cut(s) 1214
BseXI GCAGC 3 cut(s) 245, 427, 1068
BseYI CCCAGC 1 cut(s) 1214
BsgI GTGCAG 1 cut(s) 1457
BshFI GGCC 5 cut(s) 202, 752, 883, 1077, 1089
BshNI GGYRCC 1 cut(s) 1098
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 3 cut(s) 1051, 1078, 1274
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 4 cut(s) 748, 877, 1050, 1534
BsmAI GTCTC 1 cut(s) 1040
BsmFI GGGAC 1 cut(s) 742
BsmI GAATGC 2 cut(s) 1271, 1419
BsnI GGCC 5 cut(s) 202, 752, 883, 1077, 1089
Bso31I GGTCTC 1 cut(s) 1040
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 1214, 1238
Bsp143I GATC 3 cut(s) 475, 583, 1537
Bsp19I CCATGG 1 cut(s) 1162
BspACI CCGC 3 cut(s) 230, 1218, 1528
BspANI GGCC 5 cut(s) 202, 752, 883, 1077, 1089
BspCNI CTCAG 4 cut(s) 760, 919, 1408, 1524
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 882, 1100
BspMI ACCTGC 2 cut(s) 375, 1110
BspPI GGATC 3 cut(s) 470, 578, 1545
BspT107I GGYRCC 1 cut(s) 1098
BspTNI GGTCTC 1 cut(s) 1040
BsrDI GCAATG 1 cut(s) 946
BsrFI RCCGGY 3 cut(s) 1050, 1077, 1273
BsrI ACTGG 4 cut(s) 159, 1012, 1328, 1402
BssAI RCCGGY 3 cut(s) 1050, 1077, 1273
BssECI CCNNGG 2 cut(s) 841, 1162
BssMI GATC 3 cut(s) 475, 583, 1537
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 841, 1162
Bst4CI ACNGT 2 cut(s) 292, 1305
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 1203
BstC8I GCNNGC 4 cut(s) 1075, 1079, 1234, 1271
BstDEI CTNAG 4 cut(s) 768, 906, 1395, 1511
BstDSI CCRYGG 1 cut(s) 1162
BstF5I GGATG 3 cut(s) 244, 425, 820
BstKTI GATC 3 cut(s) 478, 586, 1540
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 3 cut(s) 475, 583, 1537
BstMWI GCNNNNNNNGC 8 cut(s) 108, 239, 350, 410, 1070, 1203, 1218, 1259
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 1 cut(s) 1214
BstV1I GCAGC 3 cut(s) 245, 427, 1068
BstX2I RGATCY 2 cut(s) 475, 583
BstYI RGATCY 2 cut(s) 475, 583
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 5 cut(s) 202, 752, 883, 1077, 1089
BtgI CCRYGG 1 cut(s) 1162
BtsCI GGATG 3 cut(s) 244, 425, 820
BtsIMutI CAGTG 3 cut(s) 724, 765, 1315
BveI ACCTGC 2 cut(s) 375, 1110
Cac8I GCNNGC 4 cut(s) 1075, 1079, 1234, 1271
CciI TCATGA 1 cut(s) 646
Cfr10I RCCGGY 3 cut(s) 1050, 1077, 1273
Cfr13I GGNCC 6 cut(s) 497, 605, 675, 881, 1129, 1460
CseI GACGC 1 cut(s) 100
Csp6I GTAC 8 cut(s) 152, 159, 449, 739, 932, 1099, 1346, 1405
CviAII CATG 8 cut(s) 129, 135, 470, 647, 761, 872, 1085, 1163
CviQI GTAC 8 cut(s) 152, 159, 449, 739, 932, 1099, 1346, 1405
DdeI CTNAG 4 cut(s) 768, 906, 1395, 1511
DpnI GATC 3 cut(s) 477, 585, 1539
DpnII GATC 3 cut(s) 475, 583, 1537
DraI TTTAAA 1 cut(s) 1110
DriI GACNNNNNGTC 2 cut(s) 769, 1327
EaeI YGGCCR 2 cut(s) 750, 1087
Eam1104I CTCTTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 2 cut(s) 769, 1327
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 841, 1162
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 1238
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 5 cut(s) 497, 605, 675, 1129, 1460
Eco88I CYCGRG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 881
EcoT14I CCWWGG 2 cut(s) 841, 1162
EcoT22I ATGCAT 1 cut(s) 1419
EcoT38I GRGCYC 1 cut(s) 1238
ErhI CCWWGG 2 cut(s) 841, 1162
FaeI CATG 8 cut(s) 132, 138, 473, 650, 764, 875, 1088, 1166
FalI AAGNNNNNCTT 2 cut(s) 1190, 1222
FaqI GGGAC 1 cut(s) 742
FatI CATG 8 cut(s) 128, 134, 469, 646, 760, 871, 1084, 1162
Fnu4HI GCNGC 5 cut(s) 231, 234, 441, 1082, 1219
FokI GGATG 3 cut(s) 231, 412, 807
FriOI GRGCYC 1 cut(s) 1238
Fsp4HI GCNGC 5 cut(s) 231, 234, 441, 1082, 1219
FspBI CTAG 3 cut(s) 80, 179, 204
GluI GCNGC 5 cut(s) 231, 234, 441, 1082, 1219
GsaI CCCAGC 1 cut(s) 1218
GsuI CTGGAG 2 cut(s) 435, 1029
HaeIII GGCC 5 cut(s) 202, 752, 883, 1077, 1089
HapII CCGG 3 cut(s) 1051, 1078, 1274
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 8 cut(s) 132, 138, 473, 650, 764, 875, 1088, 1166
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 7 cut(s) 76, 272, 755, 770, 832, 960, 1178
HpaII CCGG 3 cut(s) 1051, 1078, 1274
HphI GGTGA 4 cut(s) 27, 344, 736, 1465
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 8 cut(s) 277, 358, 459, 814, 955, 1004, 1288, 1398
Hpy188III TCNNGA 7 cut(s) 479, 559, 575, 647, 989, 1279, 1513
Hpy8I GTNNAC 1 cut(s) 793
HpyAV CCTTC 8 cut(s) 270, 572, 630, 950, 978, 1075, 1348, 1473
HpyCH4III ACNGT 2 cut(s) 292, 1305
HpyCH4IV ACGT 3 cut(s) 104, 150, 1479
HpyF10VI GCNNNNNNNGC 8 cut(s) 108, 239, 350, 410, 1070, 1203, 1218, 1259
HpyF3I CTNAG 4 cut(s) 768, 906, 1395, 1511
HpySE526I ACGT 3 cut(s) 104, 150, 1479
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 8 cut(s) 132, 138, 473, 650, 764, 875, 1088, 1166
KpnI GGTACC 1 cut(s) 1102
KroI GCCGGC 1 cut(s) 1077
KroNI GCCGGC 1 cut(s) 1079
Kzo9I GATC 3 cut(s) 475, 583, 1537
Lsp1109I GCAGC 3 cut(s) 245, 427, 1068
LweI GCATC 3 cut(s) 362, 434, 682
MaeI CTAG 3 cut(s) 80, 179, 204
MaeII ACGT 3 cut(s) 104, 150, 1479
MaeIII GTNAC 3 cut(s) 112, 146, 533
MalI GATC 3 cut(s) 477, 585, 1539
MboI GATC 3 cut(s) 475, 583, 1537
MboII GAAGA 7 cut(s) 42, 51, 54, 57, 162, 485, 701
MflI RGATCY 2 cut(s) 475, 583
MhlI GDGCHC 2 cut(s) 1214, 1238
MlsI TGGCCA 1 cut(s) 1089
MluCI AATT 5 cut(s) 326, 336, 1056, 1242, 1291
MluNI TGGCCA 1 cut(s) 1089
MlyI GAGTC 3 cut(s) 764, 779, 1187
Mox20I TGGCCA 1 cut(s) 1089
Mph1103I ATGCAT 1 cut(s) 1419
MroNI GCCGGC 1 cut(s) 1077
MscI TGGCCA 1 cut(s) 1089
MseI TTAA 3 cut(s) 339, 1109, 1187
MslI CAYNNNNRTG 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 1089
MspA1I CMGCKG 1 cut(s) 1218
MspI CCGG 3 cut(s) 1051, 1078, 1274
Mva1269I GAATGC 2 cut(s) 1271, 1419
MwoI GCNNNNNNNGC 8 cut(s) 108, 239, 350, 410, 1070, 1203, 1218, 1259
NaeI GCCGGC 1 cut(s) 1079
NcoI CCATGG 1 cut(s) 1162
NdeII GATC 3 cut(s) 475, 583, 1537
NgoMIV GCCGGC 1 cut(s) 1077
NlaIII CATG 8 cut(s) 132, 138, 473, 650, 764, 875, 1088, 1166
NlaIV GGNNCC 2 cut(s) 882, 1100
NmeAIII GCCGAG 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 1419
PaeR7I CTCGAG 1 cut(s) 444
PagI TCATGA 1 cut(s) 646
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 1266
PctI GAATGC 2 cut(s) 1271, 1419
PdiI GCCGGC 1 cut(s) 1079
PfeI GAWTC 4 cut(s) 76, 272, 832, 960
PflFI GACNNNGTC 1 cut(s) 797
PkrI GCNGC 5 cut(s) 232, 235, 442, 1083, 1220
PleI GAGTC 3 cut(s) 763, 778, 1186
PpsI GAGTC 3 cut(s) 763, 778, 1186
PshBI ATTAAT 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 1214
PspN4I GGNNCC 2 cut(s) 882, 1100
PspPI GGNCC 6 cut(s) 497, 605, 675, 881, 1129, 1460
PspXI VCTCGAGB 1 cut(s) 444
PsuI RGATCY 2 cut(s) 475, 583
PsyI GACNNNGTC 1 cut(s) 797
RsaI GTAC 8 cut(s) 153, 160, 450, 740, 933, 1100, 1347, 1406
RsaNI GTAC 8 cut(s) 152, 159, 449, 739, 932, 1099, 1346, 1405
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 3 cut(s) 339, 1109, 1187
SatI GCNGC 5 cut(s) 231, 234, 441, 1082, 1219
Sau3AI GATC 3 cut(s) 475, 583, 1537
Sau96I GGNCC 6 cut(s) 497, 605, 675, 881, 1129, 1460
ScaI AGTACT 1 cut(s) 1406
SchI GAGTC 3 cut(s) 764, 779, 1187
SduI GDGCHC 2 cut(s) 1214, 1238
SfaNI GCATC 3 cut(s) 362, 434, 682
SfcI CTRYAG 1 cut(s) 627
Sfr274I CTCGAG 1 cut(s) 444
SinI GGWCC 5 cut(s) 497, 605, 675, 1129, 1460
SlaI CTCGAG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 4 cut(s) 210, 444, 492, 1408
SmoI CTYRAG 4 cut(s) 210, 444, 492, 1408
Sse9I AATT 5 cut(s) 326, 336, 1056, 1242, 1291
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 230, 1218, 1528
SspMI CTAG 3 cut(s) 80, 179, 204
StuI AGGCCT 1 cut(s) 202
StyI CCWWGG 2 cut(s) 841, 1162
TaaI ACNGT 2 cut(s) 292, 1305
TaiI ACGT 3 cut(s) 107, 153, 1482
TaqI TCGA 4 cut(s) 266, 445, 835, 1545
TasI AATT 5 cut(s) 326, 336, 1056, 1242, 1291
TatI WGTACW 2 cut(s) 1345, 1404
TauI GCSGC 2 cut(s) 233, 1221
TfiI GAWTC 4 cut(s) 76, 272, 832, 960
Tru1I TTAA 3 cut(s) 339, 1109, 1187
Tru9I TTAA 3 cut(s) 339, 1109, 1187
TscAI CASTG 3 cut(s) 724, 772, 1315
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 233, 440, 1081
Tsp45I GTSAC 1 cut(s) 112
TspRI CASTG 3 cut(s) 724, 772, 1315
Tth111I GACNNNGTC 1 cut(s) 797
VpaK11BI GGWCC 5 cut(s) 497, 605, 675, 1129, 1460
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 2 cut(s) 1004, 1160
XhoI CTCGAG 1 cut(s) 444
XspI CTAG 3 cut(s) 80, 179, 204
ZrmI AGTACT 1 cut(s) 1406
Zsp2I ATGCAT 1 cut(s) 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.