Rh3CG186100

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000727
Physical Location & Seq
Forward (+)
16339956 .. 16343355
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG186100.1

Sequence Viewer

Length: 1212 bp
ATGAATGAAACTCATGCTTCTATCATGAATAATCCTGCTACAAGACAAAAGGAGTATACTAGTTTAGGGCGGCTAGAGGGTCGTCTTCGAAGAGCTCGAGTGGCCATAAGAGAGGCTCGATTTGGAAATAAAACACATGATGCAGATTACATTCCTAATGGTCCAATGTATTGGAATGCTAATGCCTTTCACAGGAGCTACTTGGAAATGGAGAAACGGTTTAAAGTCTTTGTATATGAAGAAGGGGAACCGCCACTGTTTCATAATGGCCCTTGCAAAAGTATATACTCTATGGAGGGAAATTTTATACATGAGATTGAGGTGAATAACCAATTTCGGACTCGAAATCCTGAGGAAGCGCATGTTTATTTTCTTCCCTACAGTGTGACAATGTTGGTTCGGTTCGTATATGTGCGTGACTCGCATGATTTCAGTCCCATCAGACAGACAGTAAGGGATTATGTCAATATTATCTCCACCAAATATCCCTATTGGAATAGAAGCCTTGCAGCTGATCACTTTACACTTGCTTGCCATGATTGGGGGCCAGAGACTTCAAATTCAGATCCTTATCTGCGCAAAAATTCAATCCGTGGTCTATGCAATGCAAATACCTCCGAAGGGTTTAACCCCTCTAAGGATGTCTCCTTTCCAGAAATCAATCTTCAAACTGGTGACACACACGGCTTCCTTGGCGGGCCTTCTCCAAGGCTGCGCTCGATATTAGCTTTCTTTGCTGGAGGAATTCACGGTCCTATTAGGCCTATATTGCTAGAGCATTGGGAAAACAAAGATGAGGAATTGAAGGTGCATCAGTATCTTCCAAAGGGTGTCAACTATTATGACATGATGAGAAAGAGTAAATTCTGTCTTTGCCCAAGCGGGTACGAAGTTGCAAGCCCGAGGGTGGTTGAGGCAATATACACAGGGTGTGTTCCTGTCCTAATTTCAGATCATTATGTGCCACCTTTCGGTGATGTTCTGAATTGGAAGTCTTTCTCCATTGAGGTTTCAGTGAGTGATATTCCTAACTTGAAGAACATATTGACGAGCATATCTACGAGACAATATCTAAGAATGCAAAGGAGAGTGATACAAGTCAGGAGACATTTTGAGGTCAATTCTCCTCCTAAACGATTTGATGTTTTCCATATGATCCTACATTCTATTTGGCTAAGAAGACTCAATGTTAGAGTACATGATGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

403

Amino Acids

46.95

Weight (kDa)

8.97

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 70 - 352 7.9e-59 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 578
AccI GTMKAC 1 cut(s) 56
AciI CCGC 4 cut(s) 70, 251, 696, 882
AclWI GGATC 2 cut(s) 560, 1150
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 5 cut(s) 301, 559, 583, 744, 863
AdeI CACNNNGTG 1 cut(s) 930
AfaI GTAC 2 cut(s) 887, 1197
AfiI CCNNNNNNNGG 6 cut(s) 192, 541, 621, 637, 907, 971
AgsI TTSAA 5 cut(s) 558, 588, 668, 805, 1036
AhlI ACTAGT 1 cut(s) 59
AluBI AGCT 4 cut(s) 95, 198, 512, 728
AluI AGCT 4 cut(s) 95, 198, 512, 728
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 4 cut(s) 545, 649, 1057, 1099
AlwI GGATC 2 cut(s) 560, 1150
Ama87I CYCGRG 2 cut(s) 96, 901
AoxI GGCC 5 cut(s) 102, 268, 545, 698, 761
ApeKI GCWGC 2 cut(s) 509, 712
ApoI RAATTY 5 cut(s) 301, 559, 583, 744, 863
Asp700I GAANNNNTTC 1 cut(s) 995
AspLEI GCGC 3 cut(s) 361, 579, 717
AspS9I GGNCC 5 cut(s) 161, 269, 545, 698, 752
AsuHPI GGTGA 3 cut(s) 334, 686, 986
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 2 cut(s) 96, 901
AvaII GGWCC 2 cut(s) 161, 752
AxyI CCTNAGG 1 cut(s) 351
BalI TGGCCA 1 cut(s) 104
BanII GRGCYC 1 cut(s) 97
BbsI GAAGAC 2 cut(s) 77, 1186
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 521, 699
BccI CCATC 1 cut(s) 446
BceAI ACGGC 1 cut(s) 700
BclI TGATCA 2 cut(s) 514, 1204
BcoDI GTCTC 4 cut(s) 545, 649, 1057, 1099
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 3 cut(s) 60, 74, 773
BfmI CTRYAG 1 cut(s) 379
BisI GCNGC 3 cut(s) 71, 510, 713
BlsI GCNGC 3 cut(s) 72, 511, 714
Bme18I GGWCC 2 cut(s) 161, 752
BmeT110I CYCGRG 2 cut(s) 96, 901
BmgT120I GGNCC 5 cut(s) 161, 269, 545, 698, 752
BmiI GGNNCC 2 cut(s) 249, 546
BmsI GCATC 2 cut(s) 130, 820
BpiI GAAGAC 2 cut(s) 77, 1186
BpmI CTGGAG 1 cut(s) 759
Bpu14I TTCGAA 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 4 cut(s) 592, 691, 707, 902
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 6 cut(s) 192, 541, 621, 637, 907, 971
Bse1I ACTGG 1 cut(s) 676
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 610
Bse8I GATNNNNATC 1 cut(s) 570
BseDI CCNNGG 4 cut(s) 592, 691, 707, 902
BseGI GGATG 1 cut(s) 646
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 6 cut(s) 192, 541, 621, 637, 907, 971
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 1 cut(s) 1116
BseXI GCAGC 2 cut(s) 521, 699
BshFI GGCC 5 cut(s) 104, 270, 547, 700, 763
BsiHKAI GWGCWC 1 cut(s) 97
BsiHKCI CYCGRG 2 cut(s) 96, 901
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 6 cut(s) 192, 541, 621, 637, 907, 971
BsmAI GTCTC 4 cut(s) 545, 649, 1057, 1099
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 2 cut(s) 181, 1083
BsnI GGCC 5 cut(s) 104, 270, 547, 700, 763
BsoBI CYCGRG 2 cut(s) 96, 901
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 5 cut(s) 514, 565, 952, 1155, 1204
BspACI CCGC 4 cut(s) 70, 251, 696, 882
BspANI GGCC 5 cut(s) 104, 270, 547, 700, 763
BspCNI CTCAG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 249, 546
BspPI GGATC 2 cut(s) 560, 1150
BspQI GCTCTTC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 610
BsrI ACTGG 1 cut(s) 676
BssECI CCNNGG 4 cut(s) 592, 691, 707, 902
BssMI GATC 5 cut(s) 514, 565, 952, 1155, 1204
BssNAI GTATAC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 691, 707
Bst1107I GTATAC 1 cut(s) 57
Bst4CI ACNGT 5 cut(s) 219, 258, 383, 451, 752
Bst6I CTCTTC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 3 cut(s) 532, 698, 898
BstDEI CTNAG 4 cut(s) 351, 636, 1073, 1175
BstDSI CCRYGG 1 cut(s) 592
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 646
BstHHI GCGC 3 cut(s) 361, 579, 717
BstKTI GATC 5 cut(s) 517, 568, 955, 1158, 1207
BstMAI GTCTC 4 cut(s) 545, 649, 1057, 1099
BstMBI GATC 5 cut(s) 514, 565, 952, 1155, 1204
BstMWI GCNNNNNNNGC 5 cut(s) 101, 421, 693, 734, 769
BstNSI RCATGY 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 521, 699
BstV2I GAAGAC 2 cut(s) 77, 1186
BstX2I RGATCY 1 cut(s) 565
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 565
BstZ17I GTATAC 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 5 cut(s) 104, 270, 547, 700, 763
BtgI CCRYGG 1 cut(s) 592
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 3 cut(s) 254, 388, 1020
Cac8I GCNNGC 3 cut(s) 532, 698, 898
CciI TCATGA 1 cut(s) 24
CfoI GCGC 3 cut(s) 361, 579, 717
Cfr13I GGNCC 5 cut(s) 161, 269, 545, 698, 752
Csp6I GTAC 2 cut(s) 886, 1196
CviAII CATG 9 cut(s) 14, 25, 137, 311, 362, 425, 536, 847, 1199
CviQI GTAC 2 cut(s) 886, 1196
DdeI CTNAG 4 cut(s) 351, 636, 1073, 1175
DpnI GATC 5 cut(s) 516, 567, 954, 1157, 1206
DpnII GATC 5 cut(s) 514, 565, 952, 1155, 1204
DraI TTTAAA 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 930
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 691, 707
Eco147I AGGCCT 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 161, 752
Eco53kI GAGCTC 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 96, 901
EcoICRI GAGCTC 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 744
EcoT14I CCWWGG 2 cut(s) 691, 707
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 2 cut(s) 691, 707
FaeI CATG 9 cut(s) 17, 28, 140, 314, 365, 428, 539, 850, 1202
FaqI GGGAC 1 cut(s) 420
FatI CATG 9 cut(s) 13, 24, 136, 310, 361, 424, 535, 846, 1198
FauI CCCGC 2 cut(s) 689, 875
FauNDI CATATG 1 cut(s) 1152
FbaI TGATCA 2 cut(s) 514, 1204
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 3 cut(s) 71, 510, 713
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 3 cut(s) 71, 510, 713
FspBI CTAG 3 cut(s) 60, 74, 773
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 3 cut(s) 360, 578, 716
GluI GCNGC 3 cut(s) 71, 510, 713
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 5 cut(s) 104, 270, 547, 700, 763
HhaI GCGC 3 cut(s) 361, 579, 717
Hin1II CATG 9 cut(s) 17, 28, 140, 314, 365, 428, 539, 850, 1202
Hin6I GCGC 3 cut(s) 359, 577, 715
HinP1I GCGC 3 cut(s) 359, 577, 715
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 3 cut(s) 340, 419, 1182
HphI GGTGA 3 cut(s) 334, 686, 986
Hpy166II GTNNAC 2 cut(s) 57, 835
Hpy188I TCNGA 6 cut(s) 339, 443, 565, 619, 952, 984
Hpy188III TCNNGA 4 cut(s) 25, 350, 653, 1102
Hpy8I GTNNAC 2 cut(s) 57, 835
HpyAV CCTTC 4 cut(s) 236, 614, 711, 799
HpyCH4III ACNGT 5 cut(s) 219, 258, 383, 451, 752
HpyCH4V TGCA 8 cut(s) 143, 276, 509, 603, 608, 811, 896, 1081
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 421, 693, 734, 769
HpyF3I CTNAG 4 cut(s) 351, 636, 1073, 1175
Hsp92II CATG 9 cut(s) 17, 28, 140, 314, 365, 428, 539, 850, 1202
HspAI GCGC 3 cut(s) 359, 577, 715
Ksp22I TGATCA 2 cut(s) 514, 1204
Kzo9I GATC 5 cut(s) 514, 565, 952, 1155, 1204
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 2 cut(s) 521, 699
LweI GCATC 2 cut(s) 130, 820
MaeI CTAG 3 cut(s) 60, 74, 773
MaeIII GTNAC 3 cut(s) 385, 416, 674
MalI GATC 5 cut(s) 516, 567, 954, 1157, 1206
MboI GATC 5 cut(s) 514, 565, 952, 1155, 1204
MboII GAAGA 8 cut(s) 77, 102, 251, 365, 656, 812, 1048, 1191
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 3 cut(s) 334, 413, 1176
Mox20I TGGCCA 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 995
MscI TGGCCA 1 cut(s) 104
MseI TTAA 2 cut(s) 222, 627
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 512
Mva1269I GAATGC 2 cut(s) 181, 1083
MwoI GCNNNNNNNGC 5 cut(s) 101, 421, 693, 734, 769
NdeI CATATG 1 cut(s) 1152
NdeII GATC 5 cut(s) 514, 565, 952, 1155, 1204
NlaIII CATG 9 cut(s) 17, 28, 140, 314, 365, 428, 539, 850, 1202
NlaIV GGNNCC 2 cut(s) 249, 546
NmuCI GTSAC 3 cut(s) 385, 416, 674
NsbI TGCGCA 1 cut(s) 578
NspI RCATGY 1 cut(s) 365
NspV TTCGAA 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 96
PagI TCATGA 1 cut(s) 24
PceI AGGCCT 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PctI GAATGC 2 cut(s) 181, 1083
PdmI GAANNNNTTC 1 cut(s) 995
PkrI GCNGC 3 cut(s) 72, 511, 714
PleI GAGTC 3 cut(s) 334, 413, 1176
PpsI GAGTC 3 cut(s) 334, 413, 1176
Psp124BI GAGCTC 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 249, 546
PspPI GGNCC 5 cut(s) 161, 269, 545, 698, 752
PspXI VCTCGAGB 1 cut(s) 96
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 887, 1197
RsaNI GTAC 2 cut(s) 886, 1196
SacI GAGCTC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 222, 627
SatI GCNGC 3 cut(s) 71, 510, 713
Sau3AI GATC 5 cut(s) 514, 565, 952, 1155, 1204
Sau96I GGNCC 5 cut(s) 161, 269, 545, 698, 752
SchI GAGTC 3 cut(s) 334, 413, 1176
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 2 cut(s) 130, 820
SfcI CTRYAG 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 96
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 2 cut(s) 161, 752
SlaI CTCGAG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 59
SseBI AGGCCT 1 cut(s) 763
SsiI CCGC 4 cut(s) 70, 251, 696, 882
SspI AATATT 1 cut(s) 469
SspMI CTAG 3 cut(s) 60, 74, 773
SstI GAGCTC 1 cut(s) 97
StuI AGGCCT 1 cut(s) 763
StyI CCWWGG 2 cut(s) 691, 707
TaaI ACNGT 5 cut(s) 219, 258, 383, 451, 752
TaqI TCGA 5 cut(s) 88, 97, 118, 343, 719
TatI WGTACW 1 cut(s) 1195
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 2 cut(s) 222, 627
Tru9I TTAA 2 cut(s) 222, 627
TscAI CASTG 3 cut(s) 261, 388, 1020
TseFI GTSAC 3 cut(s) 385, 416, 674
TseI GCWGC 2 cut(s) 509, 712
Tsp45I GTSAC 3 cut(s) 385, 416, 674
TspDTI ATGAA 5 cut(s) 17, 21, 41, 251, 252
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 3 cut(s) 261, 388, 1020
VpaK11BI GGWCC 2 cut(s) 161, 752
XagI CCTNNNNNAGG 1 cut(s) 190
XapI RAATTY 5 cut(s) 301, 559, 583, 744, 863
XceI RCATGY 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 995
XspI CTAG 3 cut(s) 60, 74, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.