Rw0G008950

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00346
OG0000727
Physical Location & Seq
Forward (+)
76113 .. 78726
2614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008950.1

Sequence Viewer

Length: 1593 bp
ATGATGGCGTATAGTAACAAGAAACCGGGCGGCGGCGGCGGTGGTGCTGCTGGTGCTGGTAGTACTGGTTCATATGCATGTTGGTCTTATTCGTCTTACTCAGCGATTTTGGTGCTTATTGTTCCATTGGTTGTGGTTTGCGGGTTGATTTCGCTGTTGAGTCCGAATTCCTCCAATTGGGTTTTCATATCCAACTACTACTTAACCGGCCCTTCTTCGAATACGAGTACCACTAACTCGTCGGAGATCGGAGCTTCACACGACAACATTTTGGGCTTGAGGTCTACGGTGGTTGTTATGGATATGCACAGTAGTACTATAGAGGAAGTTCACTCAGATGATTATGTACAGAATCGGTCTGCTTCTCCGCCGCTCGCCATAGAAGAAGCGACACCACCACCACTTCAACAACCGATTATTAATGGGACAAAGGACGAAGACCCCATGAATGAAACTCATGCTTCTATCATGAATAATCCTGCTACAAGACAAAAGGAGTATACTAGTTTAGGGCGGCTAGAGGGTCATTACATTCCTAATGGTCCAATGTATTGGAATGCTAATGCCTTTCACAGGAGCTACTTGGAAATGGAGAAACGGTTTAAAGTCTTTGTATATGAAGAAGGGGAACCGCCACTGTTTCATAATGGCCCTTGCAAAAGTATATACTCTATGGAGGGAAATTTTATACATGAGATTGAGGTGAATAACCAATTTCGGACTCGAAATCCTGAGGAAGCGCATGTTTATTTTCTTCCCTACAGTGTGACAATGTTGGTTCGGTTCGTATATGTGCGTGACTCGCATGATTTCAGTCCCATCAGACAGACAGTAAGGGATTATGTCAATATTATCTCCACCAAATATCCCTATTGGAATAGAAGCCTTGCAGCTGATCACTTTACACTTGCTTGCCATGATTGGGGGCCAGAGACTTCAAATTCAGATCCTTATCTGCGCAAAAATTCAATCCGTGGTCTATGCAATGCAAATACCTCCGAAGGGTTTAACCCCTCTAAGGATGTCTCCTTTCCAGAAATCAATCTTCAAACTGGTGACACACACGGCTTCCTTGGCGGGCCTTCTCCAAGGCTGCGCTCGATATTAGCTTTCTTTGCTGGAGGAATTCACGGTCCTATTAGGCCTATATTGCTAGAGCATTGGGAAAACAAAGATGAGGAATTGAAGGTGCATCAGTATCTTCCAAAGGGTGTCAACTATTATGACATGATGAGAAAGAGTAAGTTCTGTCTTTGCCCAAGCGGGTACGAAGTTGCAAGCCCAAGGGTGGTTGAGGCAATATACACAGGGTGTGTTCCTGTCCTAATTTCAGATCATTATGTGCCACCTTTCGGTGATGTTCTGAATTGGAAGTCTTTCTCTATTGAGGTTTCAGTAAGTGATATTCCTAACTTGAAGAACATATTGACGAGCATATCTACGAGACAATATCTAAGAATGCAAAGGAGAGTGATACAAGTCAGGAGACATTTTGAGGTCAATTCTCCTCCTAAACGATTTGATGTTTTCCATATGATCCTACATTCTATTTGGCTAAGAAGACTCAATGTTAGAGTACATGATGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

530

Amino Acids

59.92

Weight (kDa)

6.6

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 197 - 479 1.7e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 959
AccBSI CCGCTC 1 cut(s) 373
AccI GTMKAC 2 cut(s) 284, 500
AclWI GGATC 2 cut(s) 941, 1531
AcsI RAATTY 5 cut(s) 166, 682, 940, 964, 1125
AdeI CACNNNGTG 1 cut(s) 1311
AfaI GTAC 6 cut(s) 64, 229, 316, 348, 1268, 1578
AfiI CCNNNNNNNGG 8 cut(s) 32, 177, 573, 922, 1002, 1018, 1288, 1352
AgsI TTSAA 6 cut(s) 407, 939, 969, 1049, 1186, 1417
AhlI ACTAGT 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 4 cut(s) 254, 579, 893, 1109
AluI AGCT 4 cut(s) 254, 579, 893, 1109
Alw26I GTCTC 4 cut(s) 926, 1030, 1438, 1480
AlwI GGATC 2 cut(s) 941, 1531
AoxI GGCC 5 cut(s) 208, 649, 926, 1079, 1142
ApeKI GCWGC 3 cut(s) 47, 890, 1093
ApoI RAATTY 5 cut(s) 166, 682, 940, 964, 1125
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 1376
AspLEI GCGC 3 cut(s) 742, 960, 1098
AspS9I GGNCC 6 cut(s) 209, 542, 650, 926, 1079, 1133
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 3 cut(s) 715, 1067, 1367
AsuII TTCGAA 1 cut(s) 218
AvaII GGWCC 2 cut(s) 542, 1133
AxyI CCTNAGG 1 cut(s) 732
BbsI GAAGAC 2 cut(s) 444, 1567
BbvI GCAGC 3 cut(s) 34, 902, 1080
BccI CCATC 1 cut(s) 827
BceAI ACGGC 1 cut(s) 1081
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BclI TGATCA 2 cut(s) 895, 1585
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 4 cut(s) 926, 1030, 1438, 1480
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 3 cut(s) 504, 518, 1154
BfmI CTRYAG 2 cut(s) 318, 760
BisI GCNGC 8 cut(s) 31, 34, 37, 48, 371, 515, 891, 1094
BlsI GCNGC 8 cut(s) 32, 35, 38, 49, 372, 516, 892, 1095
BmcAI AGTACT 2 cut(s) 64, 316
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 2 cut(s) 542, 1133
BmgT120I GGNCC 6 cut(s) 209, 542, 650, 926, 1079, 1133
BmiI GGNNCC 2 cut(s) 630, 927
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 1201
BpiI GAAGAC 2 cut(s) 444, 1567
BpmI CTGGAG 1 cut(s) 1140
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 951
BsaJI CCNNGG 4 cut(s) 973, 1072, 1088, 1283
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 177, 573, 922, 1002, 1018, 1288, 1352
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 70, 1057
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 991
Bse8I GATNNNNATC 1 cut(s) 951
BseDI CCNNGG 4 cut(s) 973, 1072, 1088, 1283
BseGI GGATG 1 cut(s) 1027
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 8 cut(s) 32, 177, 573, 922, 1002, 1018, 1288, 1352
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 3 cut(s) 114, 348, 723
BseNI ACTGG 2 cut(s) 70, 1057
BseRI GAGGAG 1 cut(s) 1497
BseXI GCAGC 3 cut(s) 34, 902, 1080
BshFI GGCC 5 cut(s) 210, 651, 928, 1081, 1144
BsiSI CCGG 2 cut(s) 26, 207
BslFI GGGAC 2 cut(s) 439, 801
BslI CCNNNNNNNGG 8 cut(s) 32, 177, 573, 922, 1002, 1018, 1288, 1352
BsmAI GTCTC 4 cut(s) 926, 1030, 1438, 1480
BsmFI GGGAC 2 cut(s) 439, 801
BsmI GAATGC 2 cut(s) 562, 1464
BsnI GGCC 5 cut(s) 210, 651, 928, 1081, 1144
Bsp119I TTCGAA 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
BspANI GGCC 5 cut(s) 210, 651, 928, 1081, 1144
BspCNI CTCAG 3 cut(s) 113, 347, 724
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 630, 927
BspPI GGATC 2 cut(s) 941, 1531
BspT104I TTCGAA 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 991
BsrFI RCCGGY 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 2 cut(s) 70, 1057
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 973, 1072, 1088, 1283
BssMI GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
BssNAI GTATAC 1 cut(s) 501
BssT1I CCWWGG 3 cut(s) 1072, 1088, 1283
Bst1107I GTATAC 1 cut(s) 501
Bst4CI ACNGT 7 cut(s) 289, 311, 600, 639, 764, 832, 1133
BstAUI TGTACA 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 4 cut(s) 375, 913, 1079, 1279
BstDEI CTNAG 6 cut(s) 100, 334, 732, 1017, 1454, 1556
BstDSI CCRYGG 1 cut(s) 973
BstENI CCTNNNNNAGG 1 cut(s) 571
BstF5I GGATG 1 cut(s) 1027
BstHHI GCGC 3 cut(s) 742, 960, 1098
BstKTI GATC 6 cut(s) 249, 898, 949, 1336, 1539, 1588
BstMAI GTCTC 4 cut(s) 926, 1030, 1438, 1480
BstMBI GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
BstMWI GCNNNNNNNGC 6 cut(s) 36, 53, 802, 1074, 1115, 1150
BstNSI RCATGY 2 cut(s) 81, 746
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 2 cut(s) 318, 760
BstV1I GCAGC 3 cut(s) 34, 902, 1080
BstV2I GAAGAC 2 cut(s) 444, 1567
BstX2I RGATCY 1 cut(s) 946
BstXI CCANNNNNNTGG 1 cut(s) 552
BstYI RGATCY 1 cut(s) 946
BstZ17I GTATAC 1 cut(s) 501
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 5 cut(s) 210, 651, 928, 1081, 1144
BtgI CCRYGG 1 cut(s) 973
BtsCI GGATG 1 cut(s) 1027
BtsIMutI CAGTG 2 cut(s) 635, 769
Cac8I GCNNGC 4 cut(s) 375, 913, 1079, 1279
CciI TCATGA 1 cut(s) 468
CfoI GCGC 3 cut(s) 742, 960, 1098
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 6 cut(s) 209, 542, 650, 926, 1079, 1133
Csp6I GTAC 6 cut(s) 63, 228, 315, 347, 1267, 1577
CviQI GTAC 6 cut(s) 63, 228, 315, 347, 1267, 1577
DdeI CTNAG 6 cut(s) 100, 334, 732, 1017, 1454, 1556
DpnI GATC 6 cut(s) 248, 897, 948, 1335, 1538, 1587
DpnII GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
DraI TTTAAA 1 cut(s) 604
DraIII CACNNNGTG 1 cut(s) 1311
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 3 cut(s) 1072, 1088, 1283
Eco147I AGGCCT 1 cut(s) 1144
Eco47I GGWCC 2 cut(s) 542, 1133
Eco81I CCTNAGG 1 cut(s) 732
EcoNI CCTNNNNNAGG 1 cut(s) 571
EcoRI GAATTC 2 cut(s) 166, 1125
EcoT14I CCWWGG 3 cut(s) 1072, 1088, 1283
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 3 cut(s) 1072, 1088, 1283
FaqI GGGAC 2 cut(s) 439, 801
FauI CCCGC 3 cut(s) 134, 1070, 1256
FauNDI CATATG 2 cut(s) 73, 1533
FbaI TGATCA 2 cut(s) 895, 1585
FblI GTMKAC 2 cut(s) 284, 500
Fnu4HI GCNGC 8 cut(s) 31, 34, 37, 48, 371, 515, 891, 1094
FokI GGATG 1 cut(s) 1034
Fsp4HI GCNGC 8 cut(s) 31, 34, 37, 48, 371, 515, 891, 1094
FspBI CTAG 3 cut(s) 504, 518, 1154
FspI TGCGCA 1 cut(s) 959
GlaI GCGC 3 cut(s) 741, 959, 1097
GluI GCNGC 8 cut(s) 31, 34, 37, 48, 371, 515, 891, 1094
GsuI CTGGAG 1 cut(s) 1140
HaeIII GGCC 5 cut(s) 210, 651, 928, 1081, 1144
HapII CCGG 2 cut(s) 26, 207
HhaI GCGC 3 cut(s) 742, 960, 1098
Hin6I GCGC 3 cut(s) 740, 958, 1096
HinP1I GCGC 3 cut(s) 740, 958, 1096
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HinfI GANTC 5 cut(s) 160, 352, 721, 800, 1563
HpaII CCGG 2 cut(s) 26, 207
HphI GGTGA 3 cut(s) 715, 1067, 1367
Hpy166II GTNNAC 4 cut(s) 285, 331, 501, 1216
Hpy188III TCNNGA 4 cut(s) 469, 731, 1034, 1483
Hpy8I GTNNAC 4 cut(s) 285, 331, 501, 1216
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 5 cut(s) 222, 617, 995, 1092, 1180
HpyCH4III ACNGT 7 cut(s) 289, 311, 600, 639, 764, 832, 1133
HpyCH4V TGCA 9 cut(s) 77, 307, 657, 890, 984, 989, 1192, 1277, 1462
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 53, 802, 1074, 1115, 1150
HpyF3I CTNAG 6 cut(s) 100, 334, 732, 1017, 1454, 1556
HspAI GCGC 3 cut(s) 740, 958, 1096
Ksp22I TGATCA 2 cut(s) 895, 1585
Kzo9I GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
LmnI GCTCC 2 cut(s) 251, 576
Lsp1109I GCAGC 3 cut(s) 34, 902, 1080
LweI GCATC 1 cut(s) 1201
MaeI CTAG 3 cut(s) 504, 518, 1154
MaeIII GTNAC 4 cut(s) 14, 766, 797, 1055
MalI GATC 6 cut(s) 248, 897, 948, 1335, 1538, 1587
MbiI CCGCTC 1 cut(s) 373
MboI GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
MboII GAAGA 9 cut(s) 207, 395, 449, 632, 746, 1037, 1193, 1429, 1572
MfeI CAATTG 1 cut(s) 175
MflI RGATCY 1 cut(s) 946
MlyI GAGTC 4 cut(s) 169, 715, 794, 1557
MmeI TCCRAC 2 cut(s) 216, 222
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 1376
MseI TTAA 4 cut(s) 203, 420, 603, 1008
MslI CAYNNNNRTG 2 cut(s) 76, 336
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 2 cut(s) 26, 207
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 175
Mva1269I GAATGC 2 cut(s) 562, 1464
MwoI GCNNNNNNNGC 6 cut(s) 36, 53, 802, 1074, 1115, 1150
NciI CCSGG 1 cut(s) 27
NdeI CATATG 2 cut(s) 73, 1533
NdeII GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
NlaIV GGNNCC 2 cut(s) 630, 927
NmuCI GTSAC 3 cut(s) 766, 797, 1055
NsbI TGCGCA 1 cut(s) 959
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 2 cut(s) 81, 746
NspV TTCGAA 1 cut(s) 218
PagI TCATGA 1 cut(s) 468
PceI AGGCCT 1 cut(s) 1144
PctI GAATGC 2 cut(s) 562, 1464
PdmI GAANNNNTTC 1 cut(s) 1376
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 8 cut(s) 32, 35, 38, 49, 372, 516, 892, 1095
PleI GAGTC 4 cut(s) 168, 715, 794, 1557
PpsI GAGTC 4 cut(s) 168, 715, 794, 1557
PshBI ATTAAT 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 630, 927
PspPI GGNCC 6 cut(s) 209, 542, 650, 926, 1079, 1133
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
PsuI RGATCY 1 cut(s) 946
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 6 cut(s) 64, 229, 316, 348, 1268, 1578
RsaNI GTAC 6 cut(s) 63, 228, 315, 347, 1267, 1577
RseI CAYNNNNRTG 2 cut(s) 76, 336
SaqAI TTAA 4 cut(s) 203, 420, 603, 1008
SatI GCNGC 8 cut(s) 31, 34, 37, 48, 371, 515, 891, 1094
Sau3AI GATC 6 cut(s) 246, 895, 946, 1333, 1536, 1585
Sau96I GGNCC 6 cut(s) 209, 542, 650, 926, 1079, 1133
ScaI AGTACT 2 cut(s) 64, 316
SchI GAGTC 4 cut(s) 169, 715, 794, 1557
ScrFI CCNGG 1 cut(s) 27
SfaNI GCATC 1 cut(s) 1201
SfcI CTRYAG 2 cut(s) 318, 760
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 2 cut(s) 542, 1133
SmiMI CAYNNNNRTG 2 cut(s) 76, 336
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 503
SseBI AGGCCT 1 cut(s) 1144
SspI AATATT 1 cut(s) 850
SspMI CTAG 3 cut(s) 504, 518, 1154
StuI AGGCCT 1 cut(s) 1144
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 3 cut(s) 1072, 1088, 1283
TaaI ACNGT 7 cut(s) 289, 311, 600, 639, 764, 832, 1133
TaqI TCGA 3 cut(s) 218, 724, 1100
TaqII GACCGA 1 cut(s) 345
TatI WGTACW 4 cut(s) 62, 314, 346, 1576
TauI GCSGC 5 cut(s) 33, 36, 39, 373, 517
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 4 cut(s) 203, 420, 603, 1008
Tru9I TTAA 4 cut(s) 203, 420, 603, 1008
TscAI CASTG 2 cut(s) 642, 769
TseFI GTSAC 3 cut(s) 766, 797, 1055
TseI GCWGC 3 cut(s) 47, 890, 1093
Tsp45I GTSAC 3 cut(s) 766, 797, 1055
TspDTI ATGAA 7 cut(s) 60, 175, 461, 465, 485, 632, 633
TspGWI ACGGA 1 cut(s) 962
TspRI CASTG 2 cut(s) 642, 769
VpaK11BI GGWCC 2 cut(s) 542, 1133
VspI ATTAAT 1 cut(s) 420
XagI CCTNNNNNAGG 1 cut(s) 571
XapI RAATTY 5 cut(s) 166, 682, 940, 964, 1125
XceI RCATGY 2 cut(s) 81, 746
XmiI GTMKAC 2 cut(s) 284, 500
XmnI GAANNNNTTC 1 cut(s) 1376
XspI CTAG 3 cut(s) 504, 518, 1154
ZrmI AGTACT 2 cut(s) 64, 316
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.