Rh2DG328500

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000727
Physical Location & Seq
Reverse (-)
41588722 .. 41592032
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG328500.1

Sequence Viewer

Length: 1041 bp
ATGATAATATGGGTTTGCTGCCTCATTCGATCACCAAATCAAAAGCTAGTACGTTTCATTTTGATAGTGGAGATGAGAGATAGAGATATGAGGGCTGCTCGTACTTACAGACCAGTTTTTTCATTATCCTGGTTTCTAGTAGTGTTACTGGTAATACCTTTGCTGGTGTTGCTGTTAATCTTTCTGATACAGCCTCTGAGTTCAAGCTCTTCATCATCAACTGCAACTTGGATAGTTGATAATTCTAGTACTTCTGGAAATTTTAGCTACTCTCTAGCTTTAACTGCAGCTCAAGAATGGCCTCAACCTCCAGCTGAAGCTCCACTTACTAGTTTTTTATATGGTAGTCCAAGTCCTGCTCCTGCCCCTCAAATATCAACTGGGGCTATACAAGTTGGTGGTTCTAGAAGAGTAAAATCATGGTGGAGCATGAAGCTAGATGAGCTAGAAGCAAGTTTGGGCAAAGCAAGGTCTTCCATAAGAGAAGCAGCTGGTACATCACTAGTACGACTTAGGAACAAGATCAATTCGACATCAAAAACAGTGCAACTAGTACATGACGACGACCCCGACTATGTTCCTCACGGCCGCATATATCGGAACGCCCACGCCTTTCATAGGAGCTACCTATTAATGGAGAAGCTGTTCAAGATATACGTATACGAAGAAGGAGAGGTCCCACTGTTTCATAGTGGTCCATGCAAGAGCATATATTCCTCAGAAGGAAGGTTCATTAATGAAATGGAGATGGGCAAATTGTACAGAACAAAAGACCCAGATGAAGCTCACGTTTACTTCATTCCAGTAAGTGTGGCCAATCTGGTTCAGTACCTGTATGTCCCCGATTCAAAAGATCTAGATCCGATGAAGCGAGCCACCGTCGACTACGTTAAAGTCATTGCTGATAGGCATCCTTTCTGGAATAGAAGCCTTGGTGCTGATCATTTCATGCTTTCATGTCATGACTGGGTACGCAGCTCCTCCTCCTCTTCCTCTTCCTCATCTTCATCCTCGTTCCTTCATCTTCGTCTTCGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

346

Amino Acids

39.15

Weight (kDa)

9.17

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 213 - 327 2.3e-16 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 660, 882
AciI CCGC 1 cut(s) 589
AclWI GGATC 1 cut(s) 854
AcoI YGGCCR 2 cut(s) 586, 813
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 9 cut(s) 51, 103, 250, 496, 507, 555, 761, 830, 972
AfiI CCNNNNNNNGG 2 cut(s) 618, 634
AgsI TTSAA 3 cut(s) 204, 649, 849
AhlI ACTAGT 3 cut(s) 329, 502, 550
AjnI CCWGG 1 cut(s) 128
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AlwI GGATC 1 cut(s) 854
AlwNI CAGNNNCTG 2 cut(s) 196, 832
AoxI GGCC 3 cut(s) 299, 586, 813
ApeKI GCWGC 5 cut(s) 18, 95, 287, 488, 975
ApoI RAATTY 1 cut(s) 259
AseI ATTAAT 2 cut(s) 632, 735
Asp700I GAANNNNTTC 1 cut(s) 644
AspS9I GGNCC 2 cut(s) 676, 695
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 2 cut(s) 676, 695
BalI TGGCCA 1 cut(s) 815
BbsI GAAGAC 2 cut(s) 465, 1022
BbvI GCAGC 5 cut(s) 5, 82, 299, 500, 987
BccI CCATC 1 cut(s) 742
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 130
BclI TGATCA 1 cut(s) 940
BcuI ACTAGT 3 cut(s) 329, 502, 550
BfmI CTRYAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 853
BisI GCNGC 6 cut(s) 19, 96, 288, 489, 589, 976
BlsI GCNGC 6 cut(s) 20, 97, 289, 490, 590, 977
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 2 cut(s) 676, 695
BmgT120I GGNCC 2 cut(s) 676, 695
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 2 cut(s) 390, 976
BmsI GCATC 1 cut(s) 919
BmuI ACTGGG 2 cut(s) 390, 976
BpiI GAAGAC 2 cut(s) 465, 1022
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 658
BsaBI GATNNNNATC 2 cut(s) 858, 909
BsaJI CCNNGG 1 cut(s) 931
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 2 cut(s) 618, 634
Bse1I ACTGG 5 cut(s) 113, 153, 385, 803, 971
Bse3DI GCAATG 1 cut(s) 897
Bse8I GATNNNNATC 2 cut(s) 858, 909
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 931
BseGI GGATG 2 cut(s) 910, 1007
BseJI GATNNNNATC 2 cut(s) 858, 909
BseLI CCNNNNNNNGG 2 cut(s) 618, 634
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 2 cut(s) 188, 732
BseNI ACTGG 5 cut(s) 113, 153, 385, 803, 971
BseRI GAGGAG 3 cut(s) 970, 973, 976
BseX3I CGGCCG 1 cut(s) 586
BseXI GCAGC 5 cut(s) 5, 82, 299, 500, 987
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 3 cut(s) 301, 588, 815
BsiEI CGRYCG 1 cut(s) 589
BslFI GGGAC 2 cut(s) 662, 824
BslI CCNNNNNNNGG 2 cut(s) 618, 634
BsmFI GGGAC 2 cut(s) 662, 824
BsnI GGCC 3 cut(s) 301, 588, 815
Bsp1407I TGTACA 1 cut(s) 759
Bsp143I GATC 5 cut(s) 29, 522, 853, 859, 940
BspACI CCGC 1 cut(s) 589
BspANI GGCC 3 cut(s) 301, 588, 815
BspCNI CTCAG 2 cut(s) 189, 731
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 1 cut(s) 678
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 854
BspQI GCTCTTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 897
BsrGI TGTACA 1 cut(s) 759
BsrI ACTGG 5 cut(s) 113, 153, 385, 803, 971
BssECI CCNNGG 1 cut(s) 931
BssMI GATC 5 cut(s) 29, 522, 853, 859, 940
BssNAI GTATAC 1 cut(s) 661
BssT1I CCWWGG 1 cut(s) 931
Bst1107I GTATAC 1 cut(s) 661
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 544, 684, 880
Bst6I CTCTTC 4 cut(s) 214, 403, 994, 1000
BstAUI TGTACA 1 cut(s) 759
BstBAI YACGTR 1 cut(s) 658
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 3 cut(s) 197, 512, 718
BstENI CCTNNNNNAGG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 910, 1007
BstKTI GATC 5 cut(s) 32, 525, 856, 862, 943
BstMBI GATC 5 cut(s) 29, 522, 853, 859, 940
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 3 cut(s) 169, 284, 442
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 285
BstSNI TACGTA 1 cut(s) 658
BstV1I GCAGC 5 cut(s) 5, 82, 299, 500, 987
BstV2I GAAGAC 2 cut(s) 465, 1022
BstX2I RGATCY 2 cut(s) 853, 859
BstYI RGATCY 2 cut(s) 853, 859
BstZ17I GTATAC 1 cut(s) 661
BstZI CGGCCG 1 cut(s) 586
BsuRI GGCC 3 cut(s) 301, 588, 815
BtsCI GGATG 2 cut(s) 910, 1007
BtsIMutI CAGTG 2 cut(s) 549, 680
Cac8I GCNNGC 1 cut(s) 873
CaiI CAGNNNCTG 2 cut(s) 196, 832
CciI TCATGA 1 cut(s) 961
Cfr13I GGNCC 2 cut(s) 676, 695
Csp6I GTAC 9 cut(s) 50, 102, 249, 495, 506, 554, 760, 829, 971
CviAII CATG 7 cut(s) 420, 430, 557, 699, 949, 957, 962
CviQI GTAC 9 cut(s) 50, 102, 249, 495, 506, 554, 760, 829, 971
DdeI CTNAG 3 cut(s) 197, 512, 718
DpnI GATC 5 cut(s) 31, 524, 855, 861, 942
DpnII GATC 5 cut(s) 29, 522, 853, 859, 940
EaeI YGGCCR 2 cut(s) 586, 813
EagI CGGCCG 1 cut(s) 586
Eam1104I CTCTTC 4 cut(s) 214, 403, 994, 1000
EarI CTCTTC 4 cut(s) 214, 403, 994, 1000
EclXI CGGCCG 1 cut(s) 586
Eco105I TACGTA 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 931
Eco47I GGWCC 2 cut(s) 676, 695
Eco52I CGGCCG 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 931
ErhI CCWWGG 1 cut(s) 931
FaeI CATG 7 cut(s) 423, 433, 560, 702, 952, 960, 965
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 662, 824
FatI CATG 7 cut(s) 419, 429, 556, 698, 948, 956, 961
FbaI TGATCA 1 cut(s) 940
FblI GTMKAC 2 cut(s) 660, 882
Fnu4HI GCNGC 6 cut(s) 19, 96, 288, 489, 589, 976
FokI GGATG 2 cut(s) 897, 994
Fsp4HI GCNGC 6 cut(s) 19, 96, 288, 489, 589, 976
GluI GCNGC 6 cut(s) 19, 96, 288, 489, 589, 976
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 3 cut(s) 301, 588, 815
Hin1II CATG 7 cut(s) 423, 433, 560, 702, 952, 960, 965
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 2 cut(s) 845, 1035
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 3 cut(s) 661, 793, 883
Hpy188I TCNGA 6 cut(s) 186, 198, 600, 721, 864, 1040
Hpy188III TCNNGA 7 cut(s) 255, 293, 405, 649, 857, 919, 962
Hpy8I GTNNAC 3 cut(s) 661, 793, 883
Hpy99I CGWCG 2 cut(s) 566, 884
HpyAV CCTTC 4 cut(s) 662, 716, 720, 1028
HpyCH4III ACNGT 3 cut(s) 544, 684, 880
HpyCH4IV ACGT 4 cut(s) 52, 657, 789, 888
HpyCH4V TGCA 4 cut(s) 224, 287, 547, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 284, 442
HpyF3I CTNAG 3 cut(s) 197, 512, 718
HpySE526I ACGT 4 cut(s) 52, 657, 789, 888
Hsp92II CATG 7 cut(s) 423, 433, 560, 702, 952, 960, 965
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 5 cut(s) 29, 522, 853, 859, 940
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 5 cut(s) 325, 364, 426, 621, 983
Lsp1109I GCAGC 5 cut(s) 5, 82, 299, 500, 987
LweI GCATC 1 cut(s) 919
MaeII ACGT 4 cut(s) 52, 657, 789, 888
MaeIII GTNAC 1 cut(s) 144
MalI GATC 5 cut(s) 31, 524, 855, 861, 942
MboI GATC 5 cut(s) 29, 522, 853, 859, 940
MboII GAAGA 9 cut(s) 201, 420, 465, 677, 981, 987, 996, 1016, 1022
MflI RGATCY 2 cut(s) 853, 859
MlsI TGGCCA 1 cut(s) 815
MluCI AATT 4 cut(s) 241, 259, 526, 755
MluNI TGGCCA 1 cut(s) 815
Mox20I TGGCCA 1 cut(s) 815
MroXI GAANNNNTTC 1 cut(s) 644
MscI TGGCCA 1 cut(s) 815
MseI TTAA 5 cut(s) 176, 281, 632, 735, 891
Msp20I TGGCCA 1 cut(s) 815
MspA1I CMGCKG 2 cut(s) 314, 491
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 3 cut(s) 169, 284, 442
NdeII GATC 5 cut(s) 29, 522, 853, 859, 940
NlaIII CATG 7 cut(s) 423, 433, 560, 702, 952, 960, 965
NlaIV GGNNCC 1 cut(s) 678
PagI TCATGA 1 cut(s) 961
PciSI GCTCTTC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 845, 1035
PkrI GCNGC 6 cut(s) 20, 97, 289, 490, 590, 977
Ppu21I YACGTR 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 676
PshBI ATTAAT 2 cut(s) 632, 735
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 2 cut(s) 676, 695
PspPPI RGGWCCY 1 cut(s) 676
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 2 cut(s) 196, 832
PsuI RGATCY 2 cut(s) 853, 859
PvuII CAGCTG 2 cut(s) 314, 491
RsaI GTAC 9 cut(s) 51, 103, 250, 496, 507, 555, 761, 830, 972
RsaNI GTAC 9 cut(s) 50, 102, 249, 495, 506, 554, 760, 829, 971
SalI GTCGAC 1 cut(s) 881
SapI GCTCTTC 1 cut(s) 214
SaqAI TTAA 5 cut(s) 176, 281, 632, 735, 891
SatI GCNGC 6 cut(s) 19, 96, 288, 489, 589, 976
Sau3AI GATC 5 cut(s) 29, 522, 853, 859, 940
Sau96I GGNCC 2 cut(s) 676, 695
ScaI AGTACT 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 130
SfaNI GCATC 1 cut(s) 919
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 676, 695
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
SnaBI TACGTA 1 cut(s) 658
SpeI ACTAGT 3 cut(s) 329, 502, 550
Sse9I AATT 4 cut(s) 241, 259, 526, 755
SsiI CCGC 1 cut(s) 589
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 3 cut(s) 544, 684, 880
TaiI ACGT 4 cut(s) 55, 660, 792, 891
TaqI TCGA 4 cut(s) 28, 530, 882, 1033
TasI AATT 4 cut(s) 241, 259, 526, 755
TatI WGTACW 3 cut(s) 248, 553, 759
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 2 cut(s) 845, 1035
Tru1I TTAA 5 cut(s) 176, 281, 632, 735, 891
Tru9I TTAA 5 cut(s) 176, 281, 632, 735, 891
TscAI CASTG 2 cut(s) 549, 687
TseI GCWGC 5 cut(s) 18, 95, 287, 488, 975
TspRI CASTG 2 cut(s) 549, 687
VpaK11BI GGWCC 2 cut(s) 676, 695
VspI ATTAAT 2 cut(s) 632, 735
XagI CCTNNNNNAGG 1 cut(s) 616
XapI RAATTY 1 cut(s) 259
XbaI TCTAGA 2 cut(s) 404, 856
XmiI GTMKAC 2 cut(s) 660, 882
XmnI GAANNNNTTC 1 cut(s) 644
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.