RchiOBHm_Chr2g0123451

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000727
Physical Location & Seq
Reverse (-)
36644917 .. 36648768
3852 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49575

Sequence Viewer

Length: 1212 bp
ATGAAGCTAGATGAGCTAGAAGCAAGTTTGGGCAAAGCAAGGTCTTCCATAAGAGAAGCAGCTGGTACATCACTAGTACGACTTAGGAACAAGATCAATTCGACATCAAAAACAGTGCAACTAGTACATGACGACGACCCCGACTATGTTCCTCACGGCCGCATATATCGGAACGCCCACGCCTTTCATAGGAGCTACCTATTAATGGAGAAGCTGTTCAAGATATACGTATACGAAGAAGGAGAGGTCCCACTGTTTCATAGTGGTCCATGCAAGAGCATATATTCCTCAGAAGGAAGGTTCATTAATGAAATGGAGATGGGCAAATTGTACAGAACAAAAGACCCAGATGAAGCACACGTTTACTTCATTCCAGTAAGTGTGGCCAATCTGGTTCAGTACCTGTATGTCCCCGATTCAAAAGATCTAGATCCGATGAAGCGAGCCACCGTCGACTACGTTAAAGTCATTGCTGATAGGCATCCTTTCTGGAATAGAAGCCTTGGTGCTGATCATTTCATGCTTTCATGTCATGACTGGGGGCCAATGACGTCATCCTTTGTTCCAAATTTGTTCCACAAATCCATTAGGGTTCTTTGCAATGCCAATACTTCCGAAGGATTTAATCCATCAAAAGATGTGTCGTTTCCCGAAATTAATCTTCTAACAGGTGAAATCTCAAGTCTAGGTGGTCAGCCTCCATCGACTCGAACTATCCTCGCCTTTTTCGCCGGTCATCTTCATGGCCACATTAGGTACCTCCTTTTAAACGAATGGAAAGGCAAAGACCAAGATGTCCAAGTCTATGAGACGCTCCCAAAGAAAGTGTCCTATGAAAAAAAGTTGAAAAGTAGCAAGTTTTGCTTGTGCCCAAGTGGGTATGAAGTGGCAAGTCCAAGAGTGGTGGAAGCAATCTATGCCGAGTGTGTTCCGGTGTTGATTTCAGATGCTTATGTCCCACCTTTCAGTGATGTTTTGAATTGGAAGTCATTTTCTGTTCAAATAGATGTGAAGAACATATCGGATATCAAGAACATATTGATGGGGATATCTCATAGGCAGTACCTAAGAATGCAAAGGAATGTGAAACAAGTGCAACGACATTTTGTGGTGAATGGACCTCCTAGGAGATATGATGTTTTCCACATGATTGTTCACTCTATTTGGCTTAGAAGGTTAAATATTCGCGTTCATGATTTTCGGAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

403

Amino Acids

46.42

Weight (kDa)

9.07

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 70 - 348 2.7e-61 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 794
AatII GACGTC 1 cut(s) 554
Acc65I GGTACC 1 cut(s) 756
AccB1I GGYRCC 1 cut(s) 756
AccI GTMKAC 2 cut(s) 231, 453
AccII CGCG 1 cut(s) 1188
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 3 cut(s) 157, 384, 745
AcsI RAATTY 1 cut(s) 568
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 7 cut(s) 67, 78, 126, 332, 401, 758, 1064
AfiI CCNNNNNNNGG 2 cut(s) 189, 205
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 5 cut(s) 220, 420, 847, 979, 1001
AhlI ACTAGT 2 cut(s) 73, 121
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 5 cut(s) 7, 16, 62, 195, 214
AluI AGCT 5 cut(s) 7, 16, 62, 195, 214
Alw26I GTCTC 1 cut(s) 803
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 403
AoxI GGCC 4 cut(s) 157, 384, 542, 745
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 568
ArsI GACNNNNNNTTYG 4 cut(s) 626, 658, 812, 844
AseI ATTAAT 3 cut(s) 203, 306, 657
Asp700I GAANNNNTTC 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 756
AspA2I CCTAGG 1 cut(s) 1124
AspS9I GGNCC 4 cut(s) 247, 266, 542, 1118
AsuHPI GGTGA 2 cut(s) 683, 1123
AvaII GGWCC 3 cut(s) 247, 266, 1118
AvrII CCTAGG 1 cut(s) 1124
BaeGI GKGCMC 1 cut(s) 872
BalI TGGCCA 2 cut(s) 386, 747
BanI GGYRCC 1 cut(s) 756
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 71
BccI CCATC 4 cut(s) 313, 637, 709, 1036
BceAI ACGGC 1 cut(s) 172
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 803
BcuI ACTAGT 2 cut(s) 73, 121
BfaI CTAG 7 cut(s) 8, 17, 74, 122, 428, 686, 1125
BglII AGATCT 1 cut(s) 424
BisI GCNGC 2 cut(s) 60, 160
BlnI CCTAGG 1 cut(s) 1124
BlsI GCNGC 2 cut(s) 61, 161
Bme18I GGWCC 3 cut(s) 247, 266, 1118
BmgT120I GGNCC 4 cut(s) 247, 266, 542, 1118
BmiI GGNNCC 3 cut(s) 249, 543, 758
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 2 cut(s) 490, 937
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 664
BsaAI YACGTR 1 cut(s) 229
BsaBI GATNNNNATC 2 cut(s) 429, 480
BsaHI GRCGYC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 502, 1124
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 205
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 2 cut(s) 374, 542
Bse3DI GCAATG 2 cut(s) 468, 607
Bse8I GATNNNNATC 2 cut(s) 429, 480
BseDI CCNNGG 2 cut(s) 502, 1124
BseGI GGATG 2 cut(s) 481, 554
BseJI GATNNNNATC 2 cut(s) 429, 480
BseLI CCNNNNNNNGG 2 cut(s) 189, 205
BseMI GCAATG 2 cut(s) 468, 607
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 374, 542
BseSI GKGCMC 1 cut(s) 872
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 1188
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 4 cut(s) 159, 386, 544, 747
BshNI GGYRCC 1 cut(s) 756
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 2 cut(s) 732, 932
BslFI GGGAC 3 cut(s) 233, 395, 941
BslI CCNNNNNNNGG 2 cut(s) 189, 205
BsmAI GTCTC 1 cut(s) 803
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 3 cut(s) 233, 395, 941
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 4 cut(s) 159, 386, 544, 747
Bsp1286I GDGCHC 1 cut(s) 872
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 93, 424, 430, 511
BspACI CCGC 1 cut(s) 160
BspANI GGCC 4 cut(s) 159, 386, 544, 747
BspCNI CTCAG 1 cut(s) 302
BspFNI CGCG 1 cut(s) 1188
BspHI TCATGA 2 cut(s) 532, 1192
BspLI GGNNCC 3 cut(s) 249, 543, 758
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 756
BsrDI GCAATG 2 cut(s) 468, 607
BsrFI RCCGGY 1 cut(s) 731
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 2 cut(s) 374, 542
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 2 cut(s) 502, 1124
BssMI GATC 4 cut(s) 93, 424, 430, 511
BssNAI GTATAC 1 cut(s) 232
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 502, 1124
Bst1107I GTATAC 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 115, 255, 451
BstACI GRCGYC 1 cut(s) 551
BstAPI GCANNNNNTGC 2 cut(s) 861, 917
BstAUI TGTACA 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 4 cut(s) 83, 289, 1067, 1169
BstENI CCTNNNNNAGG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 481, 554
BstFNI CGCG 1 cut(s) 1188
BstKTI GATC 4 cut(s) 96, 427, 433, 514
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 4 cut(s) 93, 424, 430, 511
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 4 cut(s) 13, 728, 861, 917
BstSLI GKGCMC 1 cut(s) 872
BstSNI TACGTA 1 cut(s) 229
BstUI CGCG 1 cut(s) 1188
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 424, 430
BstYI RGATCY 2 cut(s) 424, 430
BstZ17I GTATAC 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 4 cut(s) 159, 386, 544, 747
BtsCI GGATG 2 cut(s) 481, 554
BtsIMutI CAGTG 3 cut(s) 120, 251, 973
Cac8I GCNNGC 1 cut(s) 444
CaiI CAGNNNCTG 1 cut(s) 403
CciI TCATGA 2 cut(s) 532, 1192
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 4 cut(s) 247, 266, 542, 1118
CseI GACGC 1 cut(s) 820
Csp6I GTAC 7 cut(s) 66, 77, 125, 331, 400, 757, 1063
CspCI CAANNNNNGTGG 2 cut(s) 885, 920
CviAII CATG 8 cut(s) 128, 270, 520, 528, 533, 743, 1147, 1193
CviQI GTAC 7 cut(s) 66, 77, 125, 331, 400, 757, 1063
DdeI CTNAG 4 cut(s) 83, 289, 1067, 1169
DpnI GATC 4 cut(s) 95, 426, 432, 513
DpnII GATC 4 cut(s) 93, 424, 430, 511
DraI TTTAAA 1 cut(s) 768
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
EaeI YGGCCR 3 cut(s) 157, 384, 745
EagI CGGCCG 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 157
Eco105I TACGTA 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 502, 1124
Eco32I GATATC 2 cut(s) 1027, 1050
Eco47I GGWCC 3 cut(s) 247, 266, 1118
Eco52I CGGCCG 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 247
EcoRV GATATC 2 cut(s) 1027, 1050
EcoT14I CCWWGG 2 cut(s) 502, 1124
ErhI CCWWGG 2 cut(s) 502, 1124
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 8 cut(s) 131, 273, 523, 531, 536, 746, 1150, 1196
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FaqI GGGAC 3 cut(s) 233, 395, 941
FatI CATG 8 cut(s) 127, 269, 519, 527, 532, 742, 1146, 1192
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 2 cut(s) 231, 453
Fnu4HI GCNGC 2 cut(s) 60, 160
FokI GGATG 2 cut(s) 468, 541
Fsp4HI GCNGC 2 cut(s) 60, 160
FspBI CTAG 7 cut(s) 8, 17, 74, 122, 428, 686, 1125
GluI GCNGC 2 cut(s) 60, 160
HaeIII GGCC 4 cut(s) 159, 386, 544, 747
HapII CCGG 2 cut(s) 732, 932
HgaI GACGC 1 cut(s) 820
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 8 cut(s) 131, 273, 523, 531, 536, 746, 1150, 1196
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 3 cut(s) 416, 706, 1204
HpaII CCGG 2 cut(s) 732, 932
HphI GGTGA 2 cut(s) 683, 1123
Hpy166II GTNNAC 4 cut(s) 232, 364, 454, 1156
Hpy188I TCNGA 7 cut(s) 171, 292, 435, 616, 946, 1024, 1203
Hpy188III TCNNGA 7 cut(s) 220, 428, 490, 533, 650, 1030, 1193
Hpy8I GTNNAC 4 cut(s) 232, 364, 454, 1156
Hpy99I CGWCG 2 cut(s) 137, 455
HpyAV CCTTC 5 cut(s) 233, 287, 291, 611, 1167
HpyCH4III ACNGT 3 cut(s) 115, 255, 451
HpyCH4IV ACGT 4 cut(s) 228, 360, 459, 551
HpyCH4V TGCA 5 cut(s) 118, 273, 600, 1075, 1096
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 728, 861, 917
HpyF3I CTNAG 4 cut(s) 83, 289, 1067, 1169
HpySE526I ACGT 4 cut(s) 228, 360, 459, 551
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 8 cut(s) 131, 273, 523, 531, 536, 746, 1150, 1196
KpnI GGTACC 1 cut(s) 760
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 93, 424, 430, 511
LmnI GCTCC 2 cut(s) 192, 819
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 490, 937
MaeI CTAG 7 cut(s) 8, 17, 74, 122, 428, 686, 1125
MaeII ACGT 4 cut(s) 228, 360, 459, 551
MalI GATC 4 cut(s) 95, 426, 432, 513
MboI GATC 4 cut(s) 93, 424, 430, 511
MboII GAAGA 5 cut(s) 36, 248, 653, 731, 1024
MflI RGATCY 2 cut(s) 424, 430
MhlI GDGCHC 1 cut(s) 872
MlsI TGGCCA 2 cut(s) 386, 747
MluCI AATT 5 cut(s) 97, 326, 568, 654, 979
MluNI TGGCCA 2 cut(s) 386, 747
MlyI GAGTC 1 cut(s) 700
MnlI CCTC 7 cut(s) 162, 238, 298, 708, 728, 770, 1131
Mox20I TGGCCA 2 cut(s) 386, 747
MroXI GAANNNNTTC 1 cut(s) 215
MscI TGGCCA 2 cut(s) 386, 747
MseI TTAA 7 cut(s) 203, 306, 462, 624, 657, 767, 1178
MslI CAYNNNNRTG 2 cut(s) 741, 1040
Msp20I TGGCCA 2 cut(s) 386, 747
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 732, 932
Mva1269I GAATGC 1 cut(s) 1077
MvnI CGCG 1 cut(s) 1188
MwoI GCNNNNNNNGC 4 cut(s) 13, 728, 861, 917
NdeII GATC 4 cut(s) 93, 424, 430, 511
NlaIII CATG 8 cut(s) 131, 273, 523, 531, 536, 746, 1150, 1196
NlaIV GGNNCC 3 cut(s) 249, 543, 758
NmeAIII GCCGAG 1 cut(s) 946
PagI TCATGA 2 cut(s) 532, 1192
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 416, 1204
PkrI GCNGC 2 cut(s) 61, 161
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
Ppu21I YACGTR 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 247
PshBI ATTAAT 3 cut(s) 203, 306, 657
Psp5II RGGWCCY 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 249, 543, 758
PspPI GGNCC 4 cut(s) 247, 266, 542, 1118
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 403
PsuI RGATCY 2 cut(s) 424, 430
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 7 cut(s) 67, 78, 126, 332, 401, 758, 1064
RsaNI GTAC 7 cut(s) 66, 77, 125, 331, 400, 757, 1063
RseI CAYNNNNRTG 2 cut(s) 741, 1040
SalI GTCGAC 1 cut(s) 452
SaqAI TTAA 7 cut(s) 203, 306, 462, 624, 657, 767, 1178
SatI GCNGC 2 cut(s) 60, 160
Sau3AI GATC 4 cut(s) 93, 424, 430, 511
Sau96I GGNCC 4 cut(s) 247, 266, 542, 1118
SchI GAGTC 1 cut(s) 700
SduI GDGCHC 1 cut(s) 872
SfaNI GCATC 2 cut(s) 490, 937
SinI GGWCC 3 cut(s) 247, 266, 1118
SmiMI CAYNNNNRTG 2 cut(s) 741, 1040
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
SnaBI TACGTA 1 cut(s) 229
SpeI ACTAGT 2 cut(s) 73, 121
Sse9I AATT 5 cut(s) 97, 326, 568, 654, 979
SsiI CCGC 1 cut(s) 160
SspI AATATT 1 cut(s) 1183
SspMI CTAG 7 cut(s) 8, 17, 74, 122, 428, 686, 1125
StyI CCWWGG 2 cut(s) 502, 1124
TaaI ACNGT 3 cut(s) 115, 255, 451
TaiI ACGT 4 cut(s) 231, 363, 462, 554
TaqI TCGA 4 cut(s) 101, 453, 704, 709
TasI AATT 5 cut(s) 97, 326, 568, 654, 979
TatI WGTACW 2 cut(s) 124, 330
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 2 cut(s) 416, 1204
Tru1I TTAA 7 cut(s) 203, 306, 462, 624, 657, 767, 1178
Tru9I TTAA 7 cut(s) 203, 306, 462, 624, 657, 767, 1178
TscAI CASTG 3 cut(s) 120, 258, 973
TseI GCWGC 1 cut(s) 59
TspRI CASTG 3 cut(s) 120, 258, 973
VpaK11BI GGWCC 3 cut(s) 247, 266, 1118
VspI ATTAAT 3 cut(s) 203, 306, 657
XagI CCTNNNNNAGG 1 cut(s) 187
XapI RAATTY 1 cut(s) 568
XbaI TCTAGA 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 1124
XmiI GTMKAC 2 cut(s) 231, 453
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 7 cut(s) 8, 17, 74, 122, 428, 686, 1125
ZraI GACGTC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.