Rroxscaffold_2G00120640

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000727
Physical Location & Seq
Forward (+)
52942936 .. 52950035
7100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120640.1

Sequence Viewer

Length: 777 bp
ATGACGTCATCCTTTGTTCCAAATTTGTTCCACAAGTCCATTAGGGTTTTTTGCAATGCCAATACTTCCGAAGGATTTAATCCATCAAAAGATGCGTCGTTTCCCGAAATTAATCTTCTAACAGGTGAAATCTCAAGTCTAGGTGGTCAGCCTCCATCGACTCGAACTGTCCTTGCCTTTTTCGCCGGTCGTCTTCATGGCCACATTAGGTACCTCCTTTTAAACGAATGGAAAGGCAAAGACCAAGATGTCCAAGTCTATGATGAGCTCCCAAAGCATGTGTCCTATGAAAAAAAGTTGAAAAGTAGCAAGTTTTGCTTGTGCCCAAGTGGGTATGAAGTGGCAAGTCCAAGAGTGGTGGAAGCAATCTATGCCGAGTGTGTTCCGGTGTTGATTTCAGATGCTTATGTCCCACCTTTCAGTGATGTTTTGAATTGGAAGTCATTTTCTGTTCAAATAGATGTGAAGAACATATCGGATATCAAGAACATATTGATGGGGATATCTCATAGGCAGTACCTAAGAATGCAAAGGAATGTGAAACAAGTGCAACGACATTTTGTGGTGAATGGACCTCCTAGGAGATATGATGTTTTCCACATGATTGCTCACTCTATTTGGCTTAGAAGAATCTGTGGCAGAATGCGTCAAGAAATGCTTACCAGATCCACCTGCAATTATAAATGCAAGCCCTTGGCCGATAGCTTCGTCTTAGAAAACCCTGCATGCGTGTTGACCGGGCAATTGCAAAACTGTCCTCCACCGGTATGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

258

Amino Acids

29.48

Weight (kDa)

9.22

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 16 - 166 8e-39 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AarI CACCTGC 1 cut(s) 680
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 680
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AclWI GGATC 1 cut(s) 660
AcoI YGGCCR 2 cut(s) 199, 696
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 212, 518
AgeI ACCGGT 1 cut(s) 763
AgsI TTSAA 3 cut(s) 301, 433, 455
AluBI AGCT 2 cut(s) 268, 705
AluI AGCT 2 cut(s) 268, 705
Alw21I GWGCWC 1 cut(s) 270
AlwI GGATC 1 cut(s) 660
AoxI GGCC 2 cut(s) 199, 696
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 266, 298
AseI ATTAAT 1 cut(s) 111
AsiGI ACCGGT 1 cut(s) 763
Asp718I GGTACC 1 cut(s) 210
AspA2I CCTAGG 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 572
AsuC2I CCSGG 1 cut(s) 739
AsuHPI GGTGA 2 cut(s) 137, 577
AvaII GGWCC 1 cut(s) 572
AvrII CCTAGG 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 201
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 270
BccI CCATC 3 cut(s) 91, 163, 490
BcnI CCSGG 1 cut(s) 739
BfaI CTAG 2 cut(s) 140, 579
BfuAI ACCTGC 1 cut(s) 680
BlnI CCTAGG 1 cut(s) 578
Bme1390I CCNGG 1 cut(s) 739
Bme18I GGWCC 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 572
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 2 cut(s) 82, 391
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 739
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 578, 693
BsaWI WCCGGW 2 cut(s) 385, 763
Bse118I RCCGGY 2 cut(s) 185, 763
Bse3DI GCAATG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 578, 693
BseGI GGATG 1 cut(s) 8
BseMI GCAATG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 326
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 201, 698
BshNI GGYRCC 1 cut(s) 210
BshTI ACCGGT 1 cut(s) 763
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 4 cut(s) 186, 386, 738, 764
BslFI GGGAC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 2 cut(s) 531, 648
BsnI GGCC 2 cut(s) 201, 698
Bsp1286I GDGCHC 2 cut(s) 270, 326
Bsp143I GATC 1 cut(s) 665
BspANI GGCC 2 cut(s) 201, 698
BspLI GGNNCC 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 185, 763
BssAI RCCGGY 2 cut(s) 185, 763
BssECI CCNNGG 2 cut(s) 578, 693
BssMI GATC 1 cut(s) 665
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 578, 693
Bst4CI ACNGT 2 cut(s) 169, 755
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 315, 371
BstC8I GCNNGC 2 cut(s) 689, 727
BstDEI CTNAG 3 cut(s) 521, 623, 712
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 1 cut(s) 668
BstMBI GATC 1 cut(s) 665
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 4 cut(s) 182, 274, 315, 371
BstNSI RCATGY 2 cut(s) 281, 729
BstSCI CCNGG 1 cut(s) 737
BstSLI GKGCMC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 665
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 2 cut(s) 201, 698
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 2 cut(s) 689, 727
Cfr10I RCCGGY 2 cut(s) 185, 763
Cfr13I GGNCC 1 cut(s) 572
CseI GACGC 2 cut(s) 84, 635
Csp6I GTAC 2 cut(s) 211, 517
CspAI ACCGGT 1 cut(s) 763
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 4 cut(s) 197, 278, 601, 726
CviJI RGCY 7 cut(s) 151, 201, 268, 622, 691, 698, 705
CviKI_1 RGCY 7 cut(s) 151, 201, 268, 622, 691, 698, 705
CviQI GTAC 2 cut(s) 211, 517
DdeI CTNAG 3 cut(s) 521, 623, 712
DpnI GATC 1 cut(s) 667
DpnII GATC 1 cut(s) 665
DraI TTTAAA 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 199, 696
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 578, 693
Eco24I GRGCYC 1 cut(s) 270
Eco32I GATATC 2 cut(s) 481, 504
Eco47I GGWCC 1 cut(s) 572
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoRV GATATC 2 cut(s) 481, 504
EcoT14I CCWWGG 2 cut(s) 578, 693
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 2 cut(s) 578, 693
FaeI CATG 4 cut(s) 200, 281, 604, 729
FalI AAGNNNNNCTT 4 cut(s) 302, 334, 642, 674
FaqI GGGAC 1 cut(s) 395
FatI CATG 4 cut(s) 196, 277, 600, 725
FriOI GRGCYC 1 cut(s) 270
FspBI CTAG 2 cut(s) 140, 579
HaeIII GGCC 2 cut(s) 201, 698
HapII CCGG 4 cut(s) 186, 386, 738, 764
HgaI GACGC 2 cut(s) 84, 635
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 200, 281, 604, 729
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 2 cut(s) 160, 630
HpaII CCGG 4 cut(s) 186, 386, 738, 764
HphI GGTGA 2 cut(s) 137, 577
Hpy166II GTNNAC 1 cut(s) 735
Hpy188I TCNGA 3 cut(s) 70, 400, 478
Hpy188III TCNNGA 3 cut(s) 104, 484, 650
Hpy8I GTNNAC 1 cut(s) 735
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 169, 755
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 7 cut(s) 54, 529, 550, 675, 687, 725, 748
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 274, 315, 371
HpyF3I CTNAG 3 cut(s) 521, 623, 712
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 200, 281, 604, 729
KpnI GGTACC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 665
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 108, 199, 399, 676, 685, 735, 751
LweI GCATC 2 cut(s) 82, 391
MaeI CTAG 2 cut(s) 140, 579
MaeII ACGT 1 cut(s) 5
MalI GATC 1 cut(s) 667
MboI GATC 1 cut(s) 665
MboII GAAGA 4 cut(s) 107, 185, 478, 639
MfeI CAATTG 1 cut(s) 743
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 2 cut(s) 270, 326
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 5 cut(s) 22, 108, 433, 676, 743
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 4 cut(s) 162, 224, 585, 768
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 4 cut(s) 78, 111, 221, 775
MslI CAYNNNNRTG 2 cut(s) 494, 766
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 4 cut(s) 186, 386, 738, 764
MspR9I CCNGG 1 cut(s) 739
MunI CAATTG 1 cut(s) 743
Mva1269I GAATGC 2 cut(s) 531, 648
MwoI GCNNNNNNNGC 4 cut(s) 182, 274, 315, 371
NciI CCSGG 1 cut(s) 739
NdeII GATC 1 cut(s) 665
NlaIII CATG 4 cut(s) 200, 281, 604, 729
NlaIV GGNNCC 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 400
NspI RCATGY 2 cut(s) 281, 729
PaeI GCATGC 1 cut(s) 729
PaqCI CACCTGC 1 cut(s) 680
PctI GAATGC 2 cut(s) 531, 648
PfeI GAWTC 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 763
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 111
PsiI TTATAA 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 572
PsuI RGATCY 1 cut(s) 665
RsaI GTAC 2 cut(s) 212, 518
RsaNI GTAC 2 cut(s) 211, 517
RseI CAYNNNNRTG 2 cut(s) 494, 766
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 78, 111, 221, 775
Sau3AI GATC 1 cut(s) 665
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 2 cut(s) 270, 326
SfaNI GCATC 2 cut(s) 82, 391
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 2 cut(s) 494, 766
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SphI GCATGC 1 cut(s) 729
Sse9I AATT 5 cut(s) 22, 108, 433, 676, 743
SspMI CTAG 2 cut(s) 140, 579
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 2 cut(s) 578, 693
TaaI ACNGT 2 cut(s) 169, 755
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 158, 163
TasI AATT 5 cut(s) 22, 108, 433, 676, 743
TfiI GAWTC 1 cut(s) 630
Tru1I TTAA 4 cut(s) 78, 111, 221, 775
Tru9I TTAA 4 cut(s) 78, 111, 221, 775
TscAI CASTG 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 185, 303, 351
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 572
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 22
XceI RCATGY 2 cut(s) 281, 729
XmaJI CCTAGG 1 cut(s) 578
XspI CTAG 2 cut(s) 140, 579
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.