FvH4_2g02352

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000727
Physical Location & Seq
Reverse (-)
1929395 .. 1930054
660 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02352.t1

Sequence Viewer

Length: 375 bp
ATGGTGAGCCACAGTGGAGGTGGTGCTGGTGGTGCGGACCGCCTGGTGTTCATTCTCCCAATCATTATCATCTTTGGTTGCATTTCATGGGTTGTTTTCACTTCCGACTTGGCTTCTACTCCCAAGTCTTCAAAGACTGGATCCAGTTTCGTTGTTGGTGTTCAAGCGTACGGTACTACCATGGCAAAAAATCAGTCTCAGATTATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGTCTACGACGAGCTCGTGTTGCAATTAAGTTGGGAAACCGATCACAAGATTCTGACTACATCCCCCAAGGACCAATTTATTGGAATGCTAATGCATTTCACAGGTACATTTCCCTTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

125

Amino Acids

13.49

Weight (kDa)

10.09

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AciI CCGC 2 cut(s) 35, 40
AclWI GGATC 2 cut(s) 135, 148
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 3 cut(s) 170, 175, 356
AgsI TTSAA 2 cut(s) 132, 164
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 2 cut(s) 135, 148
ApeKI GCWGC 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AseI ATTAAT 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 37, 320
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 37, 320
BamHI GGATCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 265
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 37, 320
BmgT120I GGNCC 2 cut(s) 37, 320
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 180, 316
Bse1I ACTGG 2 cut(s) 142, 144
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 180, 316
BseGI GGATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 142, 144
BseXI GCAGC 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 265
BsiWI CGTACG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 140, 290
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 35, 40
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 2 cut(s) 135, 148
BsrI ACTGG 2 cut(s) 142, 144
BssECI CCNNGG 2 cut(s) 180, 316
BssMI GATC 2 cut(s) 140, 290
BssNI GRCGYC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 180, 316
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 14, 173
BstACI GRCGYC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 198, 372
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 2 cut(s) 143, 293
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 140, 290
BstMWI GCNNNNNNNGC 3 cut(s) 32, 247, 269
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 330
BstYI RGATCY 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 37, 320
CpoI CGGWCCG 1 cut(s) 37
CseI GACGC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 169, 174, 355
CspI CGGWCCG 1 cut(s) 37
CviAII CATG 2 cut(s) 87, 181
CviJI RGCY 4 cut(s) 9, 113, 241, 263
CviKI_1 RGCY 4 cut(s) 9, 113, 241, 263
CviQI GTAC 3 cut(s) 169, 174, 355
DdeI CTNAG 2 cut(s) 198, 372
DpnI GATC 2 cut(s) 142, 292
DpnII GATC 2 cut(s) 140, 290
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 180, 316
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 2 cut(s) 37, 320
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 180, 316
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 180, 316
FaeI CATG 2 cut(s) 90, 184
FaiI YATR 3 cut(s) 88, 182, 225
FaqI GGGAC 1 cut(s) 226
FatI CATG 2 cut(s) 86, 180
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 263
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 2 cut(s) 90, 184
HinfI GANTC 1 cut(s) 299
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 106, 201, 304
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 14, 173
HpyCH4V TGCA 3 cut(s) 81, 272, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 247, 269
HpyF3I CTNAG 2 cut(s) 198, 372
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 2 cut(s) 90, 184
Kzo9I GATC 2 cut(s) 140, 290
LpnPI CCDG 7 cut(s) 12, 29, 56, 123, 157, 227, 337
Lsp1109I GCAGC 1 cut(s) 355
MaeI CTAG 1 cut(s) 233
MalI GATC 2 cut(s) 142, 292
MboI GATC 2 cut(s) 140, 290
MboII GAAGA 1 cut(s) 120
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 2 cut(s) 273, 324
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 3 cut(s) 11, 231, 238
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 2 cut(s) 207, 276
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 32, 247, 269
NcoI CCATGG 1 cut(s) 180
NdeII GATC 2 cut(s) 140, 290
NlaIII CATG 2 cut(s) 90, 184
NlaIV GGNNCC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 299
Pfl23II CGTACG 1 cut(s) 168
PkrI GCNGC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 37, 320
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 3 cut(s) 170, 175, 356
RsaNI GTAC 3 cut(s) 169, 174, 355
Rsr2I CGGWCCG 1 cut(s) 37
RsrII CGGWCCG 1 cut(s) 37
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 207, 276
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 140, 290
Sau96I GGNCC 2 cut(s) 37, 320
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 265
SetI ASST 3 cut(s) 22, 265, 356
SinI GGWCC 2 cut(s) 37, 320
Sse9I AATT 2 cut(s) 273, 324
SsiI CCGC 2 cut(s) 35, 40
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 2 cut(s) 180, 316
TaaI ACNGT 2 cut(s) 14, 173
TasI AATT 2 cut(s) 273, 324
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 207, 276
Tru9I TTAA 2 cut(s) 207, 276
TscAI CASTG 1 cut(s) 19
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 40, 75
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 37, 320
VspI ATTAAT 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.