Rh3DG179600

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000727
Physical Location & Seq
Reverse (-)
15994150 .. 15995499
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG179600.1

Sequence Viewer

Length: 675 bp
ATGATGGCGTATAGTAACAAGAAACCGGGCGGCGGCGGCGGTGGTGCTGCTGGTGCTGGTAGTACTGGTTCATATGCATGTTGGTCTTATTCGTCTTACTCAGCAATTTTGGTGCTTATTGTTCCATTGGTTGTGGTTTTCGGGTTGATTTCGCTGTTGAGTCCGAATTCCTCCAATTGGGTTTTCATATCCAACTACTACTTAACCGGCCCTTCTTCGAATACGAGTACCACTAACTCGTCGGAGATCGGAGCTTCACACGACAACATTTTGGGCTTGAGGTCGACGGTGGTTGTTATGGATATGCACAGTAGTACTATAGAGGAAGTTCACTCAGATGATTATGTACAGAATCGGTCTGCTTCTCCGCCGCTCGCCATAGAAGAAGCGACACCACCACCACTTCAACAACCGATTATTAATGGGACAAAGGACGAAGACCCCATGAATGAAACTCATGCTTCTATCATGAATAATCCTGCTACAAGACAAAAGGAGTATACTAGTTTAGGGCGGCTAGAGGGTCGTCTTCGAAGAGCTCGAGTGGCCATAAGAGAGGCTCGATTTGGAAATAAAACACATGATGCAGATTACATTCCTAATGGTCCAATGTATTGGAATGCTAATGCCTTTCACAGGTACCCACCAATCCAGTTTGAGGCATTATTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

224

Amino Acids

24.32

Weight (kDa)

6.05

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 673
Acc65I GGTACC 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 639
AccBSI CCGCTC 1 cut(s) 373
AccI GTMKAC 2 cut(s) 284, 500
AciI CCGC 7 cut(s) 30, 33, 36, 39, 368, 371, 514
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 5 cut(s) 64, 229, 316, 348, 641
AfiI CCNNNNNNNGG 4 cut(s) 32, 177, 636, 658
AgsI TTSAA 1 cut(s) 407
AhlI ACTAGT 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 2 cut(s) 254, 539
AluI AGCT 2 cut(s) 254, 539
Alw21I GWGCWC 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 540
AoxI GGCC 2 cut(s) 208, 546
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 166
AseI ATTAAT 1 cut(s) 420
Asp718I GGTACC 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 209, 605
AsuC2I CCSGG 1 cut(s) 27
AsuII TTCGAA 2 cut(s) 218, 532
AvaI CYCGRG 1 cut(s) 540
AvaII GGWCC 1 cut(s) 605
BalI TGGCCA 1 cut(s) 548
BanI GGYRCC 1 cut(s) 639
BanII GRGCYC 1 cut(s) 541
BbsI GAAGAC 2 cut(s) 444, 521
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 2 cut(s) 504, 518
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 6 cut(s) 31, 34, 37, 48, 371, 515
BlsI GCNGC 6 cut(s) 32, 35, 38, 49, 372, 516
BmcAI AGTACT 2 cut(s) 64, 316
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 605
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 2 cut(s) 209, 605
BmiI GGNNCC 1 cut(s) 641
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 574
BpiI GAAGAC 2 cut(s) 444, 521
Bpu14I TTCGAA 2 cut(s) 218, 532
BpuEI CTTGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 177, 636, 658
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 70, 652
BseLI CCNNNNNNNGG 4 cut(s) 32, 177, 636, 658
BseMII CTCAG 2 cut(s) 114, 348
BseNI ACTGG 2 cut(s) 70, 652
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 2 cut(s) 210, 548
BshNI GGYRCC 1 cut(s) 639
BsiHKAI GWGCWC 1 cut(s) 541
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 2 cut(s) 26, 207
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 4 cut(s) 32, 177, 636, 658
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 2 cut(s) 210, 548
BsoBI CYCGRG 1 cut(s) 540
Bsp119I TTCGAA 2 cut(s) 218, 532
Bsp1286I GDGCHC 1 cut(s) 541
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 7 cut(s) 30, 33, 36, 39, 368, 371, 514
BspANI GGCC 2 cut(s) 210, 548
BspCNI CTCAG 2 cut(s) 113, 347
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 641
BspQI GCTCTTC 1 cut(s) 529
BspT104I TTCGAA 2 cut(s) 218, 532
BspT107I GGYRCC 1 cut(s) 639
BsrBI CCGCTC 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 2 cut(s) 70, 652
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 1 cut(s) 246
BssNAI GTATAC 1 cut(s) 501
Bst1107I GTATAC 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 289, 311
Bst6I CTCTTC 1 cut(s) 529
BstAUI TGTACA 1 cut(s) 346
BstBI TTCGAA 2 cut(s) 218, 532
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 100, 334
BstENI CCTNNNNNAGG 1 cut(s) 634
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 3 cut(s) 36, 53, 545
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 2 cut(s) 444, 521
BstXI CCANNNNNNTGG 1 cut(s) 615
BstZ17I GTATAC 1 cut(s) 501
BsuRI GGCC 2 cut(s) 210, 548
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 209, 605
Csp6I GTAC 5 cut(s) 63, 228, 315, 347, 640
CviAII CATG 5 cut(s) 78, 445, 458, 469, 581
CviJI RGCY 7 cut(s) 210, 254, 276, 517, 539, 548, 560
CviKI_1 RGCY 7 cut(s) 210, 254, 276, 517, 539, 548, 560
CviQI GTAC 5 cut(s) 63, 228, 315, 347, 640
DdeI CTNAG 2 cut(s) 100, 334
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
EciI GGCGGA 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 541
FaeI CATG 5 cut(s) 81, 448, 461, 472, 584
FaqI GGGAC 1 cut(s) 439
FatI CATG 5 cut(s) 77, 444, 457, 468, 580
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 2 cut(s) 284, 500
Fnu4HI GCNGC 6 cut(s) 31, 34, 37, 48, 371, 515
FriOI GRGCYC 1 cut(s) 541
Fsp4HI GCNGC 6 cut(s) 31, 34, 37, 48, 371, 515
FspBI CTAG 2 cut(s) 504, 518
GluI GCNGC 6 cut(s) 31, 34, 37, 48, 371, 515
HaeIII GGCC 2 cut(s) 210, 548
HapII CCGG 2 cut(s) 26, 207
Hin1II CATG 5 cut(s) 81, 448, 461, 472, 584
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 2 cut(s) 160, 352
HpaII CCGG 2 cut(s) 26, 207
Hpy166II GTNNAC 3 cut(s) 285, 331, 501
Hpy188I TCNGA 4 cut(s) 165, 244, 251, 337
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 3 cut(s) 285, 331, 501
Hpy99I CGWCG 2 cut(s) 244, 289
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 2 cut(s) 289, 311
HpyCH4V TGCA 3 cut(s) 77, 307, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 53, 545
HpyF3I CTNAG 2 cut(s) 100, 334
Hsp92II CATG 5 cut(s) 81, 448, 461, 472, 584
KpnI GGTACC 1 cut(s) 643
Kzo9I GATC 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 8 cut(s) 36, 39, 42, 51, 220, 492, 622, 665
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 504, 518
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 248
MbiI CCGCTC 1 cut(s) 373
MboI GATC 1 cut(s) 246
MboII GAAGA 5 cut(s) 207, 395, 449, 521, 546
MfeI CAATTG 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 541
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 3 cut(s) 105, 166, 175
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 2 cut(s) 216, 222
MnlI CCTC 6 cut(s) 181, 273, 316, 514, 550, 652
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 79
MscI TGGCCA 1 cut(s) 548
MseI TTAA 2 cut(s) 203, 420
MslI CAYNNNNRTG 2 cut(s) 76, 336
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 2 cut(s) 26, 207
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 625
MwoI GCNNNNNNNGC 3 cut(s) 36, 53, 545
NciI CCSGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 73
NdeII GATC 1 cut(s) 246
NlaIII CATG 5 cut(s) 81, 448, 461, 472, 584
NlaIV GGNNCC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 81
NspV TTCGAA 2 cut(s) 218, 532
PaeR7I CTCGAG 1 cut(s) 540
PagI TCATGA 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 538
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 6 cut(s) 32, 35, 38, 49, 372, 516
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PshBI ATTAAT 1 cut(s) 420
PsiI TTATAA 1 cut(s) 673
Psp124BI GAGCTC 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 641
PspPI GGNCC 2 cut(s) 209, 605
PspXI VCTCGAGB 1 cut(s) 540
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
RsaI GTAC 5 cut(s) 64, 229, 316, 348, 641
RsaNI GTAC 5 cut(s) 63, 228, 315, 347, 640
RseI CAYNNNNRTG 2 cut(s) 76, 336
SacI GAGCTC 1 cut(s) 541
SalI GTCGAC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 203, 420
SatI GCNGC 6 cut(s) 31, 34, 37, 48, 371, 515
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 209, 605
ScaI AGTACT 2 cut(s) 64, 316
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 541
SetI ASST 4 cut(s) 256, 284, 541, 641
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 318
Sfr274I CTCGAG 1 cut(s) 540
SfuI TTCGAA 2 cut(s) 218, 532
SinI GGWCC 1 cut(s) 605
SlaI CTCGAG 1 cut(s) 540
SmiMI CAYNNNNRTG 2 cut(s) 76, 336
SmlI CTYRAG 2 cut(s) 277, 540
SmoI CTYRAG 2 cut(s) 277, 540
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 3 cut(s) 105, 166, 175
SsiI CCGC 7 cut(s) 30, 33, 36, 39, 368, 371, 514
SspMI CTAG 2 cut(s) 504, 518
SstI GAGCTC 1 cut(s) 541
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 289, 311
TaqI TCGA 5 cut(s) 218, 284, 532, 541, 562
TaqII GACCGA 1 cut(s) 345
TasI AATT 3 cut(s) 105, 166, 175
TatI WGTACW 3 cut(s) 62, 314, 346
TauI GCSGC 5 cut(s) 33, 36, 39, 373, 517
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 2 cut(s) 203, 420
Tru9I TTAA 2 cut(s) 203, 420
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 5 cut(s) 60, 175, 461, 465, 485
VpaK11BI GGWCC 1 cut(s) 605
VspI ATTAAT 1 cut(s) 420
XagI CCTNNNNNAGG 1 cut(s) 634
XapI RAATTY 1 cut(s) 166
XceI RCATGY 1 cut(s) 81
XhoI CTCGAG 1 cut(s) 540
XmiI GTMKAC 2 cut(s) 284, 500
XspI CTAG 2 cut(s) 504, 518
ZrmI AGTACT 2 cut(s) 64, 316
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.