Rmu_sc0005631.1_g000006

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005631.1
OG0000727
Physical Location & Seq
Forward (+)
23082 .. 25699
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005631.1_g000006.1.cds

Sequence Viewer

Length: 1653 bp
atggcgtatagtaacaagaaaccgggcggcggcggcggtggtgctgctggtgctggtagtactggttcatatgcatgttggtcttattcgtcttactcagcgattttggtgcttattgttccattggttgtggtttgcgggttgatttcgctgttgagtccgaattcctccaattgggttttcatatccaactactacttaaccggcccttcttcgaatacgagtaccactaactcgtcggagatcggagcttcacacgacaacattttgggcttgaggtctacggtggttgttatggatatgcacagtagtactatagaggaagttcactcagatgattatgtacagaatcggtctgcttctccgccgctcgccatagaagaagcgacaccaccaccacttcaacaaccgattattaatgggacaaaggacgaagaccccatgaatgaaactcacgcttctatcatgaataatcctgctacaagacaaaaggagtatactagtttagggcggctagagggtcgtcttcgaagagctcgagttgccataagagaggctcgatttggaaataaaacacatgatgcagattacattcctaatggtccaatgtattggaatgctaatgcctttcacaggagctacttggaaatggagaaacggtttaaagtctttgtatatgaagaaggggaaccgccactgtttcataatggcccttgcaaaagtatatactctatggagggaaattttatacatgagattgaggtgaataaccaatttcggactcgaaatcctgaggaagcgcatgtttattttcttccctacagtgtgacaatgttggttcggttcgtatatgtgcgtgactcgcatgatttcagtcccatcagacagacagtaagggattatgtcaatattatctccaccaaatatccctattggaatagaagccttgcagctgatcactttacacttgcttgccatgattgggggccagagacttcaaattcagatccttatctgcgcaaaaattcaatccgtggtctatgcaatgcaaatacctccgaagggtttaacccctctaaggatgtctcctttccagaaatcaatcttcaaactggtgacacacacggcttccttggcgggccttctccaaggctgcgctcgatattagctttctttgctggaggaattcacggtcctattaggcctatattgctagagcattgggaaaacaaagatgaggaattgaaggtgcatcagtatcttccaaagggtgtcaactattatgacatgatgagaaagagtaagttctgtctttgcccaagcgggtacgaagttgcaagcccaagggtggttgaggcaatatacacagggtgtgttcctgtcctaatttcagatcattatgtgccacctttcggtgatgttctgaattggaagtctttctccattgaggtttcagtgagtgatattcctaacttgaagaacatattgacgagcatatctacgagacaatatctaagaatgcaaaggagagtgacacaagtcaggagacattttgaggtcaattctcctcctaaacgatttgatgttttccatatgatcctacattctatttggctaagaagactcaatgttagagtacatgatgatcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

550

Amino Acids

62.23

Weight (kDa)

7.33

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1019
AccBSI CCGCTC 1 cut(s) 370
AccI GTMKAC 2 cut(s) 281, 497
AclWI GGATC 2 cut(s) 1001, 1591
AcsI RAATTY 5 cut(s) 163, 742, 1000, 1024, 1185
AdeI CACNNNGTG 1 cut(s) 1371
AfaI GTAC 6 cut(s) 61, 226, 313, 345, 1328, 1638
AfiI CCNNNNNNNGG 8 cut(s) 29, 174, 633, 982, 1062, 1078, 1348, 1412
AgsI TTSAA 6 cut(s) 404, 999, 1029, 1109, 1246, 1477
AhlI ACTAGT 1 cut(s) 500
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 5 cut(s) 251, 536, 639, 953, 1169
AluI AGCT 5 cut(s) 251, 536, 639, 953, 1169
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 4 cut(s) 986, 1090, 1498, 1540
AlwI GGATC 2 cut(s) 1001, 1591
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 5 cut(s) 205, 709, 986, 1139, 1202
ApeKI GCWGC 3 cut(s) 44, 950, 1153
ApoI RAATTY 5 cut(s) 163, 742, 1000, 1024, 1185
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 1436
AspLEI GCGC 3 cut(s) 802, 1020, 1158
AspS9I GGNCC 6 cut(s) 206, 602, 710, 986, 1139, 1193
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 775, 1127, 1427
AsuII TTCGAA 2 cut(s) 215, 529
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 2 cut(s) 602, 1193
AxyI CCTNAGG 1 cut(s) 792
BanII GRGCYC 1 cut(s) 538
BbsI GAAGAC 3 cut(s) 441, 518, 1627
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 3 cut(s) 31, 962, 1140
BccI CCATC 1 cut(s) 887
BceAI ACGGC 1 cut(s) 1141
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 2 cut(s) 955, 1645
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 4 cut(s) 986, 1090, 1498, 1540
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 3 cut(s) 501, 515, 1214
BfmI CTRYAG 2 cut(s) 315, 820
BisI GCNGC 8 cut(s) 28, 31, 34, 45, 368, 512, 951, 1154
BlsI GCNGC 8 cut(s) 29, 32, 35, 46, 369, 513, 952, 1155
BmcAI AGTACT 2 cut(s) 61, 313
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 602, 1193
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 6 cut(s) 206, 602, 710, 986, 1139, 1193
BmiI GGNNCC 2 cut(s) 690, 987
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 571, 1261
BoxI GACNNNNGTC 1 cut(s) 1538
BpiI GAAGAC 3 cut(s) 441, 518, 1627
BpmI CTGGAG 1 cut(s) 1200
Bpu14I TTCGAA 2 cut(s) 215, 529
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 1011
BsaJI CCNNGG 4 cut(s) 1033, 1132, 1148, 1343
BsaXI ACNNNNNCTCC 2 cut(s) 644, 674
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 174, 633, 982, 1062, 1078, 1348, 1412
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 67, 1117
Bse21I CCTNAGG 1 cut(s) 792
Bse3DI GCAATG 1 cut(s) 1051
Bse8I GATNNNNATC 1 cut(s) 1011
BseDI CCNNGG 4 cut(s) 1033, 1132, 1148, 1343
BseGI GGATG 1 cut(s) 1087
BseJI GATNNNNATC 1 cut(s) 1011
BseLI CCNNNNNNNGG 8 cut(s) 29, 174, 633, 982, 1062, 1078, 1348, 1412
BseMI GCAATG 1 cut(s) 1051
BseMII CTCAG 3 cut(s) 111, 345, 783
BseNI ACTGG 2 cut(s) 67, 1117
BseRI GAGGAG 1 cut(s) 1557
BseXI GCAGC 3 cut(s) 31, 962, 1140
BshFI GGCC 5 cut(s) 207, 711, 988, 1141, 1204
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 2 cut(s) 23, 204
BslFI GGGAC 2 cut(s) 436, 861
BslI CCNNNNNNNGG 8 cut(s) 29, 174, 633, 982, 1062, 1078, 1348, 1412
BsmAI GTCTC 4 cut(s) 986, 1090, 1498, 1540
BsmFI GGGAC 2 cut(s) 436, 861
BsmI GAATGC 2 cut(s) 622, 1524
BsnI GGCC 5 cut(s) 207, 711, 988, 1141, 1204
BsoBI CYCGRG 1 cut(s) 537
Bsp119I TTCGAA 2 cut(s) 215, 529
Bsp1286I GDGCHC 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
BspANI GGCC 5 cut(s) 207, 711, 988, 1141, 1204
BspCNI CTCAG 3 cut(s) 110, 344, 784
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 690, 987
BspPI GGATC 2 cut(s) 1001, 1591
BspQI GCTCTTC 1 cut(s) 526
BspT104I TTCGAA 2 cut(s) 215, 529
BsrBI CCGCTC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 1051
BsrFI RCCGGY 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 2 cut(s) 67, 1117
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 1033, 1132, 1148, 1343
BssMI GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
BssNAI GTATAC 1 cut(s) 498
BssT1I CCWWGG 3 cut(s) 1132, 1148, 1343
Bst1107I GTATAC 1 cut(s) 498
Bst4CI ACNGT 7 cut(s) 286, 308, 660, 699, 824, 892, 1193
Bst6I CTCTTC 1 cut(s) 526
BstAUI TGTACA 1 cut(s) 343
BstBI TTCGAA 2 cut(s) 215, 529
BstC8I GCNNGC 4 cut(s) 372, 973, 1139, 1339
BstDEI CTNAG 6 cut(s) 97, 331, 792, 1077, 1514, 1616
BstDSI CCRYGG 1 cut(s) 1033
BstENI CCTNNNNNAGG 1 cut(s) 631
BstF5I GGATG 1 cut(s) 1087
BstHHI GCGC 3 cut(s) 802, 1020, 1158
BstKTI GATC 6 cut(s) 246, 958, 1009, 1396, 1599, 1648
BstMAI GTCTC 4 cut(s) 986, 1090, 1498, 1540
BstMBI GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
BstMWI GCNNNNNNNGC 7 cut(s) 33, 50, 542, 862, 1134, 1175, 1210
BstNSI RCATGY 2 cut(s) 78, 806
BstPAI GACNNNNGTC 1 cut(s) 1538
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 315, 820
BstV1I GCAGC 3 cut(s) 31, 962, 1140
BstV2I GAAGAC 3 cut(s) 441, 518, 1627
BstX2I RGATCY 1 cut(s) 1006
BstXI CCANNNNNNTGG 1 cut(s) 612
BstYI RGATCY 1 cut(s) 1006
BstZ17I GTATAC 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 792
BsuRI GGCC 5 cut(s) 207, 711, 988, 1141, 1204
BtgI CCRYGG 1 cut(s) 1033
BtsCI GGATG 1 cut(s) 1087
BtsIMutI CAGTG 3 cut(s) 695, 829, 1461
Cac8I GCNNGC 4 cut(s) 372, 973, 1139, 1339
CciI TCATGA 1 cut(s) 465
CfoI GCGC 3 cut(s) 802, 1020, 1158
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 6 cut(s) 206, 602, 710, 986, 1139, 1193
Csp6I GTAC 6 cut(s) 60, 225, 312, 344, 1327, 1637
CviQI GTAC 6 cut(s) 60, 225, 312, 344, 1327, 1637
DdeI CTNAG 6 cut(s) 97, 331, 792, 1077, 1514, 1616
DpnI GATC 6 cut(s) 245, 957, 1008, 1395, 1598, 1647
DpnII GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
DraI TTTAAA 1 cut(s) 664
DraIII CACNNNGTG 1 cut(s) 1371
Eam1104I CTCTTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 526
EciI GGCGGA 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 3 cut(s) 1132, 1148, 1343
Eco147I AGGCCT 1 cut(s) 1204
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 602, 1193
Eco53kI GAGCTC 1 cut(s) 536
Eco81I CCTNAGG 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 631
EcoRI GAATTC 2 cut(s) 163, 1185
EcoT14I CCWWGG 3 cut(s) 1132, 1148, 1343
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 3 cut(s) 1132, 1148, 1343
FaqI GGGAC 2 cut(s) 436, 861
FauI CCCGC 3 cut(s) 131, 1130, 1316
FauNDI CATATG 2 cut(s) 70, 1593
FbaI TGATCA 2 cut(s) 955, 1645
FblI GTMKAC 2 cut(s) 281, 497
Fnu4HI GCNGC 8 cut(s) 28, 31, 34, 45, 368, 512, 951, 1154
FokI GGATG 1 cut(s) 1094
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 8 cut(s) 28, 31, 34, 45, 368, 512, 951, 1154
FspBI CTAG 3 cut(s) 501, 515, 1214
FspI TGCGCA 1 cut(s) 1019
GlaI GCGC 3 cut(s) 801, 1019, 1157
GluI GCNGC 8 cut(s) 28, 31, 34, 45, 368, 512, 951, 1154
GsuI CTGGAG 1 cut(s) 1200
HaeIII GGCC 5 cut(s) 207, 711, 988, 1141, 1204
HapII CCGG 2 cut(s) 23, 204
HhaI GCGC 3 cut(s) 802, 1020, 1158
Hin6I GCGC 3 cut(s) 800, 1018, 1156
HinP1I GCGC 3 cut(s) 800, 1018, 1156
HincII GTYRAC 1 cut(s) 1276
HindII GTYRAC 1 cut(s) 1276
HinfI GANTC 5 cut(s) 157, 349, 781, 860, 1623
HpaII CCGG 2 cut(s) 23, 204
HphI GGTGA 3 cut(s) 775, 1127, 1427
Hpy166II GTNNAC 4 cut(s) 282, 328, 498, 1276
Hpy188III TCNNGA 4 cut(s) 466, 791, 1094, 1543
Hpy8I GTNNAC 4 cut(s) 282, 328, 498, 1276
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 5 cut(s) 219, 677, 1055, 1152, 1240
HpyCH4III ACNGT 7 cut(s) 286, 308, 660, 699, 824, 892, 1193
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 50, 542, 862, 1134, 1175, 1210
HpyF3I CTNAG 6 cut(s) 97, 331, 792, 1077, 1514, 1616
HspAI GCGC 3 cut(s) 800, 1018, 1156
Ksp22I TGATCA 2 cut(s) 955, 1645
Kzo9I GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
LguI GCTCTTC 1 cut(s) 526
LmnI GCTCC 2 cut(s) 248, 636
Lsp1109I GCAGC 3 cut(s) 31, 962, 1140
LweI GCATC 2 cut(s) 571, 1261
MaeI CTAG 3 cut(s) 501, 515, 1214
MaeIII GTNAC 5 cut(s) 11, 826, 857, 1115, 1531
MalI GATC 6 cut(s) 245, 957, 1008, 1395, 1598, 1647
MbiI CCGCTC 1 cut(s) 370
MboI GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 538
MlyI GAGTC 4 cut(s) 166, 775, 854, 1617
MmeI TCCRAC 2 cut(s) 213, 219
Mph1103I ATGCAT 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 1436
MseI TTAA 4 cut(s) 200, 417, 663, 1068
MslI CAYNNNNRTG 2 cut(s) 73, 333
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 2 cut(s) 23, 204
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 172
Mva1269I GAATGC 2 cut(s) 622, 1524
MwoI GCNNNNNNNGC 7 cut(s) 33, 50, 542, 862, 1134, 1175, 1210
NciI CCSGG 1 cut(s) 24
NdeI CATATG 2 cut(s) 70, 1593
NdeII GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
NlaIV GGNNCC 2 cut(s) 690, 987
NmuCI GTSAC 4 cut(s) 826, 857, 1115, 1531
NsbI TGCGCA 1 cut(s) 1019
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 78, 806
NspV TTCGAA 2 cut(s) 215, 529
PaeR7I CTCGAG 1 cut(s) 537
PagI TCATGA 1 cut(s) 465
PceI AGGCCT 1 cut(s) 1204
PciSI GCTCTTC 1 cut(s) 526
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PctI GAATGC 2 cut(s) 622, 1524
PdmI GAANNNNTTC 1 cut(s) 1436
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 8 cut(s) 29, 32, 35, 46, 369, 513, 952, 1155
PleI GAGTC 4 cut(s) 165, 775, 854, 1617
PpsI GAGTC 4 cut(s) 165, 775, 854, 1617
PshAI GACNNNNGTC 1 cut(s) 1538
PshBI ATTAAT 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 538
PspN4I GGNNCC 2 cut(s) 690, 987
PspPI GGNCC 6 cut(s) 206, 602, 710, 986, 1139, 1193
PspXI VCTCGAGB 1 cut(s) 537
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
PsuI RGATCY 1 cut(s) 1006
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 6 cut(s) 61, 226, 313, 345, 1328, 1638
RsaNI GTAC 6 cut(s) 60, 225, 312, 344, 1327, 1637
RseI CAYNNNNRTG 2 cut(s) 73, 333
SacI GAGCTC 1 cut(s) 538
SapI GCTCTTC 1 cut(s) 526
SaqAI TTAA 4 cut(s) 200, 417, 663, 1068
SatI GCNGC 8 cut(s) 28, 31, 34, 45, 368, 512, 951, 1154
Sau3AI GATC 6 cut(s) 243, 955, 1006, 1393, 1596, 1645
Sau96I GGNCC 6 cut(s) 206, 602, 710, 986, 1139, 1193
ScaI AGTACT 2 cut(s) 61, 313
SchI GAGTC 4 cut(s) 166, 775, 854, 1617
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 2 cut(s) 571, 1261
SfcI CTRYAG 2 cut(s) 315, 820
Sfr274I CTCGAG 1 cut(s) 537
SfuI TTCGAA 2 cut(s) 215, 529
SinI GGWCC 2 cut(s) 602, 1193
SlaI CTCGAG 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 73, 333
SmlI CTYRAG 2 cut(s) 274, 537
SmoI CTYRAG 2 cut(s) 274, 537
SpeI ACTAGT 1 cut(s) 500
SseBI AGGCCT 1 cut(s) 1204
SspI AATATT 1 cut(s) 910
SspMI CTAG 3 cut(s) 501, 515, 1214
SstI GAGCTC 1 cut(s) 538
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 3 cut(s) 1132, 1148, 1343
TaaI ACNGT 7 cut(s) 286, 308, 660, 699, 824, 892, 1193
TaqI TCGA 6 cut(s) 215, 529, 538, 559, 784, 1160
TaqII GACCGA 1 cut(s) 342
TatI WGTACW 4 cut(s) 59, 311, 343, 1636
TauI GCSGC 5 cut(s) 30, 33, 36, 370, 514
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 4 cut(s) 200, 417, 663, 1068
Tru9I TTAA 4 cut(s) 200, 417, 663, 1068
TscAI CASTG 3 cut(s) 702, 829, 1461
TseFI GTSAC 4 cut(s) 826, 857, 1115, 1531
TseI GCWGC 3 cut(s) 44, 950, 1153
Tsp45I GTSAC 4 cut(s) 826, 857, 1115, 1531
TspDTI ATGAA 7 cut(s) 57, 172, 458, 462, 482, 692, 693
TspGWI ACGGA 1 cut(s) 1022
TspRI CASTG 3 cut(s) 702, 829, 1461
VpaK11BI GGWCC 2 cut(s) 602, 1193
VspI ATTAAT 1 cut(s) 417
XagI CCTNNNNNAGG 1 cut(s) 631
XapI RAATTY 5 cut(s) 163, 742, 1000, 1024, 1185
XceI RCATGY 2 cut(s) 78, 806
XhoI CTCGAG 1 cut(s) 537
XmiI GTMKAC 2 cut(s) 281, 497
XmnI GAANNNNTTC 1 cut(s) 1436
XspI CTAG 3 cut(s) 501, 515, 1214
ZrmI AGTACT 2 cut(s) 61, 313
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.