Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000727

Physical Location & Seq

Genomic Coordinates Reverse (-)

4335871 .. 4337762

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAAAAAATCACTCTCAGATCATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGTCTACGACGTGCTCGTGTCGCGATTAAGTTGGGAAATCGATCACAAGATTCCGACTACATCCCTCATGGACCAATGTATTGGAATGCTAATGCATTTCACAGGAGCTATATTGAAATGGAGAAACAGTTCAAGGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGCCCTTGCAAAAGCATATATTCCATGGAGGGGAACTTTATACATGAACTGGAGGGGCCAGAAGTTTCAAAGTTTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCATTTCCGGAGATCAACCTTCCAAATGGAAACACACAAGGTTTAATTGGTGGACCTTCTCCAAGGGTACGAACTGTGCTAGCTTTTTTTGCAGGAGGACTTCATGGCCCTATTAGGCCTCTTTTGCTGGAGTTGTGGGAGAACAAAGATCAGGACATGATGGTGCACCAGTACCTTCCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCGGTGCTCATCTCAGATCATTATGTGGCCCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATGTCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGATTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAATGTCAGAGTTCGTGATGGCCTGCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

324

Amino Acids

37.36

Weight (kDa)

9.37

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	113 - 271	8.7e-38	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03795
fragaria_vesca	FvH4_1g25430 FvH4_2g00470 FvH4_2g02351 FvH4_2g02352 FvH4_2g02430 FvH4_6g17390 FvH4_6g17390 FvH4_6g17390
malus_domestica	MD05G1001700.v1.1 MD10G1002900.v1.1 MD12G1101000.v1.1 MD14G1095400.v1.1 MD15G1138300.v1.1 MD15G1138400.v1.1
prunus_persica	Prupe.4G281300_v2.0.a1 Prupe.7G121600_v2.0.a1 Prupe.8G004600_v2.0.a1
pyrus_communis	pycom05g00190 pycom10g00230 pycom12g09940 pycom14g09360 pycom15g12460 pycom15g12470 pycom15g12480 pycom15g12490 pycom15g12510 pycom15g12520
rosa_chinensis	RchiOBHm_Chr2g0123451 RchiOBHm_Chr3g0471641 RchiOBHm_Chr6g0246291 RchiOBHm_Chr6g0250461
rosa_laevigata	RLG00000015265 RLG00000015539 RLG00000018756 RLG00000024149 RLG00000026019
rosa_multiflora	Rmu_sc0000411.1_g000001 Rmu_sc0001066.1_g000013 Rmu_sc0005631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00120630 Rroxscaffold_2G00120640 Rroxscaffold_6G00409720 Rroxscaffold_7G00214700 Rroxscaffold_7G00217220
rosa_rugosa	Rorug02G0245900 Rorug03G0118500 Rorug03G0118600 Rorug05G0496700 Rorug05G0520100
rosa_samantha	Rh2AG304500 Rh2BG312600 Rh2CG291000 Rh2DG328500 Rh3AG169700 Rh3BG195400 Rh3CG186100 Rh3CG195600 Rh3DG179600 Rh6AG005900 Rh6AG034300 Rh6BG004700 Rh6CG004100 Rh6CG029800 Rh6DG003900
rosa_wichuraiana	Rw0G008950 Rw0G015450 Rw2G024400 Rw6G000650 Rw6G000720 Rw6G002770 Rw6G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccI	GTMKAC	2 cut(s)	73, 815
AccII	CGCG	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	787
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	471, 575
AfiI	CCNNNNNNNGG	2 cut(s)	276, 583
AgsI	TTSAA	9 cut(s)	185, 202, 315, 385, 647, 764, 793, 854, 877
AhdI	GACNNNNNGTC	1 cut(s)	944
AjiI	CACGTC	1 cut(s)	80
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	2 cut(s)	177, 485
AluI	AGCT	2 cut(s)	177, 485
Alw21I	GWGCWC	3 cut(s)	85, 570, 702
Alw44I	GTGCAC	1 cut(s)	566
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	6 cut(s)	247, 302, 508, 518, 720, 961
ApaLI	GTGCAC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	787
AseI	ATTAAT	1 cut(s)	27
Asp700I	GAANNNNTTC	2 cut(s)	197, 752
AspS9I	GGNCC	6 cut(s)	140, 248, 302, 455, 509, 721
AsuHPI	GGTGA	1 cut(s)	743
AsuNHI	GCTAGC	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	140, 455
BaeGI	GKGCMC	1 cut(s)	570
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	895, 943
Bbv12I	GWGCWC	3 cut(s)	85, 570, 702
BccI	CCATC	2 cut(s)	556, 953
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciVI	GTATCC	1 cut(s)	792
BfaI	CTAG	3 cut(s)	53, 482, 654
BfuI	GTATCC	1 cut(s)	792
Bme18I	GGWCC	2 cut(s)	140, 455
BmeRI	GACNNNNNGTC	1 cut(s)	944
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	6 cut(s)	140, 248, 302, 455, 509, 721
BmiI	GGNNCC	2 cut(s)	303, 723
BmsI	GCATC	1 cut(s)	724
BmtI	GCTAGC	1 cut(s)	485
BpiI	GAAGAC	2 cut(s)	895, 943
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
BpmI	CTGGAG	3 cut(s)	83, 317, 551
Bsa29I	ATCGAT	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	3 cut(s)	270, 464, 659
BsaWI	WCCGGW	2 cut(s)	409, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 583
Bse1I	ACTGG	4 cut(s)	300, 571, 688, 749
Bse3DI	GCAATG	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	409
BseCI	ATCGAT	1 cut(s)	109
BseDI	CCNNGG	3 cut(s)	270, 464, 659
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	276, 583
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	3 cut(s)	32, 720, 946
BseNI	ACTGG	4 cut(s)	300, 571, 688, 749
BseRI	GAGGAG	1 cut(s)	873
BseSI	GKGCMC	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	6 cut(s)	249, 304, 510, 520, 722, 963
BshVI	ATCGAT	1 cut(s)	109
BsiHKAI	GWGCWC	3 cut(s)	85, 570, 702
BsiSI	CCGG	2 cut(s)	410, 695
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	276, 583
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	2 cut(s)	160, 840
BsnI	GGCC	6 cut(s)	249, 304, 510, 520, 722, 963
Bsp1286I	GDGCHC	3 cut(s)	85, 570, 702
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	5 cut(s)	21, 110, 414, 550, 709
Bsp19I	CCATGG	1 cut(s)	270
Bsp68I	TCGCGA	1 cut(s)	92
BspANI	GGCC	6 cut(s)	249, 304, 510, 520, 722, 963
BspCNI	CTCAG	3 cut(s)	31, 719, 945
BspDI	ATCGAT	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	2 cut(s)	303, 723
BspOI	GCTAGC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	300, 571, 688, 749
BssECI	CCNNGG	3 cut(s)	270, 464, 659
BssMI	GATC	5 cut(s)	21, 110, 414, 550, 709
BssNI	GRCGYC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	3 cut(s)	270, 464, 659
Bst2BI	CACGAG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	198, 478
BstACI	GRCGYC	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	483, 965
BstDEI	CTNAG	4 cut(s)	18, 706, 830, 932
BstDSI	CCRYGG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	5 cut(s)	24, 113, 417, 553, 712
BstMBI	GATC	5 cut(s)	21, 110, 414, 550, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 89, 491, 526
BstNSI	RCATGY	1 cut(s)	814
BstSLI	GKGCMC	1 cut(s)	570
BstUI	CGCG	1 cut(s)	92
BstV2I	GAAGAC	2 cut(s)	895, 943
BstXI	CCANNNNNNTGG	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	792
BsuRI	GGCC	6 cut(s)	249, 304, 510, 520, 722, 963
BsuTUI	ATCGAT	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	270
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	681
BtuMI	TCGCGA	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	483, 965
CciI	TCATGA	1 cut(s)	804
Cfr13I	GGNCC	6 cut(s)	140, 248, 302, 455, 509, 721
ClaI	ATCGAT	1 cut(s)	109
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	470, 574
CviAII	CATG	8 cut(s)	137, 271, 290, 506, 559, 805, 811, 910
CviQI	GTAC	2 cut(s)	470, 574
DdeI	CTNAG	4 cut(s)	18, 706, 830, 932
DpnI	GATC	5 cut(s)	23, 112, 416, 552, 711
DpnII	GATC	5 cut(s)	21, 110, 414, 550, 709
DriI	GACNNNNNGTC	1 cut(s)	944
Eam1105I	GACNNNNNGTC	1 cut(s)	944
Eco130I	CCWWGG	3 cut(s)	270, 464, 659
Eco147I	AGGCCT	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	140, 455
Eco57I	CTGAAG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoT14I	CCWWGG	3 cut(s)	270, 464, 659
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	3 cut(s)	270, 464, 659
FaeI	CATG	8 cut(s)	140, 274, 293, 509, 562, 808, 814, 913
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	8 cut(s)	136, 270, 289, 505, 558, 804, 810, 909
FblI	GTMKAC	2 cut(s)	73, 815
FokI	GGATG	1 cut(s)	116
FspBI	CTAG	3 cut(s)	53, 482, 654
GsuI	CTGGAG	3 cut(s)	83, 317, 551
HaeIII	GGCC	6 cut(s)	249, 304, 510, 520, 722, 963
HapII	CCGG	2 cut(s)	410, 695
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	8 cut(s)	140, 274, 293, 509, 562, 808, 814, 913
HinfI	GANTC	3 cut(s)	119, 850, 939
HpaII	CCGG	2 cut(s)	410, 695
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	4 cut(s)	74, 455, 568, 816
Hpy188I	TCNGA	7 cut(s)	21, 124, 376, 709, 741, 935, 950
Hpy188III	TCNNGA	6 cut(s)	53, 91, 410, 554, 805, 956
Hpy8I	GTNNAC	4 cut(s)	74, 455, 568, 816
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	7 cut(s)	215, 371, 399, 431, 468, 587, 837
HpyCH4III	ACNGT	2 cut(s)	198, 478
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	6 cut(s)	164, 255, 360, 494, 568, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 89, 491, 526
HpyF3I	CTNAG	4 cut(s)	18, 706, 830, 932
HpySE526I	ACGT	1 cut(s)	79
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	8 cut(s)	140, 274, 293, 509, 562, 808, 814, 913
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	21, 110, 414, 550, 709
LmnI	GCTCC	1 cut(s)	174
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	3 cut(s)	53, 482, 654
MaeII	ACGT	1 cut(s)	79
MalI	GATC	5 cut(s)	23, 112, 416, 552, 711
MboI	GATC	5 cut(s)	21, 110, 414, 550, 709
MboII	GAAGA	2 cut(s)	895, 948
MhlI	GDGCHC	3 cut(s)	85, 570, 702
MluCI	AATT	2 cut(s)	447, 787
MlyI	GAGTC	1 cut(s)	933
MmeI	TCCRAC	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	166
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	2 cut(s)	197, 752
MseI	TTAA	6 cut(s)	27, 96, 321, 446, 774, 973
MslI	CAYNNNNRTG	2 cut(s)	563, 809
MspI	CCGG	2 cut(s)	410, 695
Mva1269I	GAATGC	2 cut(s)	160, 840
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	67, 89, 491, 526
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	5 cut(s)	21, 110, 414, 550, 709
NheI	GCTAGC	1 cut(s)	481
NlaIII	CATG	8 cut(s)	140, 274, 293, 509, 562, 808, 814, 913
NlaIV	GGNNCC	2 cut(s)	303, 723
NruI	TCGCGA	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	814
PagI	TCATGA	1 cut(s)	804
PceI	AGGCCT	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PctI	GAATGC	2 cut(s)	160, 840
PdmI	GAANNNNTTC	2 cut(s)	197, 752
PfeI	GAWTC	2 cut(s)	119, 850
PleI	GAGTC	1 cut(s)	933
PpsI	GAGTC	1 cut(s)	933
PshBI	ATTAAT	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	303, 723
PspPI	GGNCC	6 cut(s)	140, 248, 302, 455, 509, 721
RruI	TCGCGA	1 cut(s)	92
RsaI	GTAC	2 cut(s)	471, 575
RsaNI	GTAC	2 cut(s)	470, 574
RseI	CAYNNNNRTG	2 cut(s)	563, 809
SaqAI	TTAA	6 cut(s)	27, 96, 321, 446, 774, 973
Sau3AI	GATC	5 cut(s)	21, 110, 414, 550, 709
Sau96I	GGNCC	6 cut(s)	140, 248, 302, 455, 509, 721
SchI	GAGTC	1 cut(s)	933
SduI	GDGCHC	3 cut(s)	85, 570, 702
SetI	ASST	9 cut(s)	82, 179, 207, 423, 445, 460, 487, 579, 848
SfaNI	GCATC	1 cut(s)	724
SinI	GGWCC	2 cut(s)	140, 455
SmiMI	CAYNNNNRTG	2 cut(s)	563, 809
Sse9I	AATT	2 cut(s)	447, 787
SseBI	AGGCCT	1 cut(s)	520
SspMI	CTAG	3 cut(s)	53, 482, 654
StuI	AGGCCT	1 cut(s)	520
StyI	CCWWGG	3 cut(s)	270, 464, 659
TaaI	ACNGT	2 cut(s)	198, 478
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	109, 344
TasI	AATT	2 cut(s)	447, 787
TfiI	GAWTC	2 cut(s)	119, 850
Tru1I	TTAA	6 cut(s)	27, 96, 321, 446, 774, 973
Tru9I	TTAA	6 cut(s)	27, 96, 321, 446, 774, 973
TscAI	CASTG	1 cut(s)	688
TspDTI	ATGAA	3 cut(s)	230, 306, 494
TspRI	CASTG	1 cut(s)	688
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	140, 455
VspI	ATTAAT	1 cut(s)	27
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	787
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	1 cut(s)	814
XmiI	GTMKAC	2 cut(s)	73, 815
XmnI	GAANNNNTTC	2 cut(s)	197, 752
XspI	CTAG	3 cut(s)	53, 482, 654
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.