pycom15g12490

glycosyltransferase At5g03795

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000727
Physical Location & Seq
Forward (+)
8527879 .. 8530453
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12490.2

Sequence Viewer

Length: 1014 bp
ATGGAGAAGGTGTTCAAGATCGATCAACATTACGTATACGAAGAAGGAGAGGTTCCAATATTTCACGAAGGGCCATGCAGGGGTATATATTCATCAGAAGGAAGGTTTATTCATGAGATGGAGAAGGGCAAATTTTATCGTACAAAAGACCCTCACAAGGCACTTGTTTATTTCCTTCCATTCAGTGTGGTTACTATGGTTCAGTATATCTATATGCCTGAAACATTTGATCGAAATGGCATGAAGCTTGCTGTGGTCGACTACATCAATCTCATTTCTCACAAACATCCCTTCTGGAACCGAAGCCACGGTGCTGATCATTTCATGTTGTCCTGTCACGATTGGGGACCATTTACGACATCCTTCGTCCCTGATTTATTCCACAACTCCATTAGAGTTATGTGCAATGCAAACACTTCAGAAGGATTTAATTCGTCAAAAGATGCGTCACTTCCAGAGATTAATCTGAAAACATCGGAAATGTCAGGAATCGGCGGCCAGCCTCCATCGAATCGATCCACACTAGCTTTCTATGCTGGGGGTCTACACGGCCACATCAGGTACCTTCTCCTAAACAAATGGAAAGACAAAGACCAAGACGTGTTAGTTTACGACAAACTTCCTCAGGGAATGTCGTACGAGAACATGTTCAAGAGCAGCAAGTTTTGCTTATGCCCTAGCGGGTACGAAGTAGCGAGTCCAAGAGTGGTGGAAGCAATTTACGCCGAGTGTGTGCCGGTGTTGATTTCAGATGGCTACGTTCCTCCATTCAGCGATGTTTTGAACTGGAACTCGTTTTCTGTACAAGTTCCGGTCAAGAATATATCCGACATCAAGACCATATTGACAGCCATATCGAGCAGACGGTACCTCCGGATGCATAGGAGGGTGAAACAAGTGCAACGGCATTTTTTGGTGAATGGACCGCCGAAGAGATACGATGTTTTCCACATGATTGTTCACTCCGTCTGGCTCAGACGCTTAAACATTCGCATTCAAGATATATTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

338

Amino Acids

39.03

Weight (kDa)

8.86

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 561, 867
AccB1I GGYRCC 2 cut(s) 561, 867
AccI GTMKAC 3 cut(s) 36, 258, 544
AccIII TCCGGA 1 cut(s) 873
AciI CCGC 3 cut(s) 495, 681, 926
AclWI GGATC 1 cut(s) 510
AcoI YGGCCR 2 cut(s) 496, 550
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 6 cut(s) 142, 563, 638, 686, 804, 869
AfiI CCNNNNNNNGG 2 cut(s) 80, 157
AflIII ACRYGT 2 cut(s) 600, 645
AgsI TTSAA 4 cut(s) 16, 652, 784, 998
AjiI CACGTC 1 cut(s) 601
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 247, 527
AluI AGCT 2 cut(s) 247, 527
AlwI GGATC 1 cut(s) 510
Aor13HI TCCGGA 1 cut(s) 873
AoxI GGCC 3 cut(s) 71, 496, 550
ApeKI GCWGC 1 cut(s) 657
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AseI ATTAAT 1 cut(s) 462
Asp700I GAANNNNTTC 2 cut(s) 11, 647
Asp718I GGTACC 2 cut(s) 561, 867
AspS9I GGNCC 3 cut(s) 71, 347, 923
AsuHPI GGTGA 3 cut(s) 901, 928, 1000
AvaII GGWCC 2 cut(s) 347, 923
AxyI CCTNAGG 1 cut(s) 624
BanI GGYRCC 2 cut(s) 561, 867
BbvI GCAGC 1 cut(s) 669
BccI CCATC 3 cut(s) 112, 514, 746
BceAI ACGGC 2 cut(s) 565, 920
BclI TGATCA 1 cut(s) 316
BfaI CTAG 2 cut(s) 524, 678
BisI GCNGC 2 cut(s) 496, 658
BlsI GCNGC 2 cut(s) 497, 659
Bme18I GGWCC 2 cut(s) 347, 923
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 3 cut(s) 71, 347, 923
BmiI GGNNCC 5 cut(s) 54, 299, 348, 563, 869
BmsI GCATC 2 cut(s) 433, 867
Bsa29I ATCGAT 2 cut(s) 21, 514
BsaAI YACGTR 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 307
BsaWI WCCGGW 2 cut(s) 811, 873
BsaXI ACNNNNNCTCC 3 cut(s) 26, 855, 885
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 157
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 1 cut(s) 791
Bse21I CCTNAGG 1 cut(s) 624
Bse3DI GCAATG 1 cut(s) 412
BseAI TCCGGA 1 cut(s) 873
BseCI ATCGAT 2 cut(s) 21, 514
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 3 cut(s) 286, 359, 882
BseLI CCNNNNNNNGG 2 cut(s) 80, 157
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 638, 988
BseNI ACTGG 1 cut(s) 791
BseXI GCAGC 1 cut(s) 669
BseYI CCCAGC 1 cut(s) 536
BshFI GGCC 3 cut(s) 73, 498, 552
BshNI GGYRCC 2 cut(s) 561, 867
BshVI ATCGAT 2 cut(s) 21, 514
BsiSI CCGG 3 cut(s) 737, 812, 874
BsiWI CGTACG 1 cut(s) 636
BslFI GGGAC 2 cut(s) 353, 360
BslI CCNNNNNNNGG 2 cut(s) 80, 157
BsmFI GGGAC 2 cut(s) 353, 360
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 3 cut(s) 73, 498, 552
Bsp13I TCCGGA 1 cut(s) 873
Bsp1407I TGTACA 1 cut(s) 802
Bsp143I GATC 5 cut(s) 18, 22, 229, 316, 515
BspACI CCGC 3 cut(s) 495, 681, 926
BspANI GGCC 3 cut(s) 73, 498, 552
BspCNI CTCAG 2 cut(s) 637, 987
BspDI ATCGAT 2 cut(s) 21, 514
BspEI TCCGGA 1 cut(s) 873
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 54, 299, 348, 563, 869
BspPI GGATC 1 cut(s) 510
BspT107I GGYRCC 2 cut(s) 561, 867
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 736
BsrGI TGTACA 1 cut(s) 802
BsrI ACTGG 1 cut(s) 791
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 5 cut(s) 18, 22, 229, 316, 515
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 311, 867
Bst6I CTCTTC 1 cut(s) 926
BstAPI GCANNNNNTGC 1 cut(s) 666
BstAUI TGTACA 1 cut(s) 802
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 249, 500
BstDEI CTNAG 2 cut(s) 624, 974
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 3 cut(s) 286, 359, 882
BstKTI GATC 5 cut(s) 21, 25, 232, 319, 518
BstMBI GATC 5 cut(s) 18, 22, 229, 316, 515
BstMWI GCNNNNNNNGC 3 cut(s) 533, 666, 722
BstNSI RCATGY 1 cut(s) 649
BstSNI TACGTA 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 669
BstZ17I GTATAC 1 cut(s) 37
Bsu15I ATCGAT 2 cut(s) 21, 514
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 3 cut(s) 73, 498, 552
BsuTUI ATCGAT 2 cut(s) 21, 514
BtgI CCRYGG 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 3 cut(s) 286, 359, 882
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 249, 500
CciI TCATGA 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 3 cut(s) 71, 347, 923
ClaI ATCGAT 2 cut(s) 21, 514
CseI GACGC 2 cut(s) 435, 987
Csp6I GTAC 6 cut(s) 141, 562, 637, 685, 803, 868
CspCI CAANNNNNGTGG 2 cut(s) 690, 725
CviAII CATG 6 cut(s) 75, 113, 241, 325, 646, 952
CviQI GTAC 6 cut(s) 141, 562, 637, 685, 803, 868
DdeI CTNAG 2 cut(s) 624, 974
DpnI GATC 5 cut(s) 20, 24, 231, 318, 517
DpnII GATC 5 cut(s) 18, 22, 229, 316, 515
EaeI YGGCCR 2 cut(s) 496, 550
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
Eco105I TACGTA 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 347, 923
Eco57I CTGAAG 1 cut(s) 402
Eco81I CCTNAGG 1 cut(s) 624
EcoT22I ATGCAT 1 cut(s) 882
FaeI CATG 6 cut(s) 78, 116, 244, 328, 649, 955
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 2 cut(s) 353, 360
FatI CATG 6 cut(s) 74, 112, 240, 324, 645, 951
FauI CCCGC 1 cut(s) 674
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 3 cut(s) 36, 258, 544
Fnu4HI GCNGC 2 cut(s) 496, 658
FokI GGATG 3 cut(s) 273, 346, 889
Fsp4HI GCNGC 2 cut(s) 496, 658
FspBI CTAG 2 cut(s) 524, 678
GluI GCNGC 2 cut(s) 496, 658
GsaI CCCAGC 1 cut(s) 540
HaeIII GGCC 3 cut(s) 73, 498, 552
HapII CCGG 3 cut(s) 737, 812, 874
HgaI GACGC 2 cut(s) 435, 987
Hin1II CATG 6 cut(s) 78, 116, 244, 328, 649, 955
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 489, 511, 697
HpaII CCGG 3 cut(s) 737, 812, 874
HphI GGTGA 3 cut(s) 901, 928, 1000
Hpy166II GTNNAC 5 cut(s) 37, 259, 545, 610, 961
Hpy188I TCNGA 7 cut(s) 97, 421, 468, 478, 751, 829, 977
Hpy8I GTNNAC 5 cut(s) 37, 259, 545, 610, 961
HpyCH4III ACNGT 2 cut(s) 311, 867
HpyCH4IV ACGT 3 cut(s) 33, 600, 759
HpyCH4V TGCA 5 cut(s) 78, 405, 410, 880, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 666, 722
HpyF3I CTNAG 2 cut(s) 624, 974
HpySE526I ACGT 3 cut(s) 33, 600, 759
Hsp92II CATG 6 cut(s) 78, 116, 244, 328, 649, 955
Kpn2I TCCGGA 1 cut(s) 873
KpnI GGTACC 2 cut(s) 565, 871
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 5 cut(s) 18, 22, 229, 316, 515
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 2 cut(s) 433, 867
MaeI CTAG 2 cut(s) 524, 678
MaeII ACGT 3 cut(s) 33, 600, 759
MaeIII GTNAC 3 cut(s) 190, 335, 447
MalI GATC 5 cut(s) 20, 24, 231, 318, 517
MboI GATC 5 cut(s) 18, 22, 229, 316, 515
MboII GAAGA 2 cut(s) 53, 943
MluCI AATT 3 cut(s) 131, 430, 717
MlyI GAGTC 1 cut(s) 706
MmeI TCCRAC 1 cut(s) 852
MnlI CCTC 7 cut(s) 43, 162, 513, 633, 774, 879, 881
Mph1103I ATGCAT 1 cut(s) 882
MroI TCCGGA 1 cut(s) 873
MroXI GAANNNNTTC 2 cut(s) 11, 647
MseI TTAA 3 cut(s) 429, 462, 983
MspI CCGG 3 cut(s) 737, 812, 874
Mva1269I GAATGC 1 cut(s) 993
MwoI GCNNNNNNNGC 3 cut(s) 533, 666, 722
NdeII GATC 5 cut(s) 18, 22, 229, 316, 515
NlaIII CATG 6 cut(s) 78, 116, 244, 328, 649, 955
NlaIV GGNNCC 5 cut(s) 54, 299, 348, 563, 869
NmeAIII GCCGAG 1 cut(s) 751
NmuCI GTSAC 2 cut(s) 335, 447
NsiI ATGCAT 1 cut(s) 882
NspI RCATGY 1 cut(s) 649
PagI TCATGA 1 cut(s) 112
PciI ACATGT 1 cut(s) 645
PctI GAATGC 1 cut(s) 993
PdmI GAANNNNTTC 2 cut(s) 11, 647
PfeI GAWTC 2 cut(s) 489, 511
Pfl23II CGTACG 1 cut(s) 636
PkrI GCNGC 2 cut(s) 497, 659
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
Ppu21I YACGTR 1 cut(s) 34
PscI ACATGT 1 cut(s) 645
PshBI ATTAAT 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 536
PspLI CGTACG 1 cut(s) 636
PspN4I GGNNCC 5 cut(s) 54, 299, 348, 563, 869
PspPI GGNCC 3 cut(s) 71, 347, 923
RsaI GTAC 6 cut(s) 142, 563, 638, 686, 804, 869
RsaNI GTAC 6 cut(s) 141, 562, 637, 685, 803, 868
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 3 cut(s) 429, 462, 983
SatI GCNGC 2 cut(s) 496, 658
Sau3AI GATC 5 cut(s) 18, 22, 229, 316, 515
Sau96I GGNCC 3 cut(s) 71, 347, 923
SchI GAGTC 1 cut(s) 706
SfaNI GCATC 2 cut(s) 433, 867
SinI GGWCC 2 cut(s) 347, 923
SnaBI TACGTA 1 cut(s) 34
Sse9I AATT 3 cut(s) 131, 430, 717
SsiI CCGC 3 cut(s) 495, 681, 926
SspI AATATT 1 cut(s) 60
SspMI CTAG 2 cut(s) 524, 678
TaaI ACNGT 2 cut(s) 311, 867
TaiI ACGT 3 cut(s) 36, 603, 762
TaqI TCGA 6 cut(s) 21, 232, 258, 509, 514, 857
TasI AATT 3 cut(s) 131, 430, 717
TatI WGTACW 1 cut(s) 802
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 489, 511
Tru1I TTAA 3 cut(s) 429, 462, 983
Tru9I TTAA 3 cut(s) 429, 462, 983
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 335, 447
TseI GCWGC 1 cut(s) 657
Tsp45I GTSAC 2 cut(s) 335, 447
TspDTI ATGAA 4 cut(s) 81, 101, 257, 313
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 347, 923
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 649
XmiI GTMKAC 3 cut(s) 36, 258, 544
XmnI GAANNNNTTC 2 cut(s) 11, 647
XspI CTAG 2 cut(s) 524, 678
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.