Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

3656569 .. 3656928

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGGTACCGCCATCGGTCTCGATTGCAGCCGTGGCCGGAGTCGAAAAATTTTCCGGAGATGCTGAGAAACATTCGAGCTTCGATTCTCTTTCACTGGAGCTCGTCACGCCCAAAGCCACAGACATGACTGCGATGCTGAGAGGAAGCTATGTCCACCGGTACGACGCCGTGAGAAAGGGCGCGTCTCAGTCGCGCTTTTGGGGGTCGGGTTTTCAGATCCTCGAGAAGCTCACTGATCGTAGAGAGACGGGAAGACAGAAGGGTATAAGCGTCAATAAAAAAAATCTCAGATGGACTGTTCACTACCAGGACAAGCACTTTAGCCGACGAAAAATTTTCGTCGGCCTGTTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.4

Weight (kDa)

10.23

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	2 cut(s)	185, 196
AccIII	TCCGGA	1 cut(s)	56
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	50, 336
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	9, 164
AgeI	ACCGGT	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	5 cut(s)	81, 103, 150, 232, 356
AluI	AGCT	5 cut(s)	81, 103, 150, 232, 356
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	3 cut(s)	25, 192, 242
AlwI	GGATC	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	2 cut(s)	36, 346
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	50, 336
AsiGI	ACCGGT	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	185, 198
AvaI	CYCGRG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	22, 288
BceAI	ACGGC	2 cut(s)	17, 155
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	3 cut(s)	25, 192, 242
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	52, 126
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	56, 159
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	33
BseMII	CTCAG	4 cut(s)	57, 131, 203, 304
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	185, 196
BshFI	GGCC	2 cut(s)	38, 348
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	39, 57, 160
BsmAI	GTCTC	3 cut(s)	25, 192, 242
BsmBI	CGTCTC	2 cut(s)	192, 242
BsnI	GGCC	2 cut(s)	38, 348
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	219, 238
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	38, 348
BspCNI	CTCAG	4 cut(s)	58, 132, 202, 303
BspEI	TCCGGA	1 cut(s)	56
BspFNI	CGCG	2 cut(s)	185, 196
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	219, 238
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	66, 140, 189, 290
BstDSI	CCRYGG	1 cut(s)	33
BstFNI	CGCG	2 cut(s)	185, 196
BstHHI	GCGC	2 cut(s)	185, 198
BstKTI	GATC	2 cut(s)	222, 241
BstMAI	GTCTC	3 cut(s)	25, 192, 242
BstMBI	GATC	2 cut(s)	219, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 109
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	185, 196
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	38, 348
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	95, 234
CfoI	GCGC	2 cut(s)	185, 198
Cfr10I	RCCGGY	1 cut(s)	159
CseI	GACGC	3 cut(s)	174, 176, 262
Csp6I	GTAC	2 cut(s)	8, 163
CspAI	ACCGGT	1 cut(s)	159
CviAII	CATG	1 cut(s)	127
CviQI	GTAC	2 cut(s)	8, 163
DdeI	CTNAG	4 cut(s)	66, 140, 189, 290
DpnI	GATC	2 cut(s)	221, 240
DpnII	GATC	2 cut(s)	219, 238
EaeI	YGGCCR	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	2 cut(s)	192, 242
FaeI	CATG	1 cut(s)	130
FaiI	YATR	3 cut(s)	128, 153, 269
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	2 cut(s)	184, 197
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	38, 348
HapII	CCGG	3 cut(s)	39, 57, 160
HgaI	GACGC	3 cut(s)	174, 176, 262
HhaI	GCGC	2 cut(s)	185, 198
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	2 cut(s)	183, 196
HinP1I	GCGC	2 cut(s)	183, 196
HinfI	GANTC	2 cut(s)	42, 86
HpaII	CCGG	3 cut(s)	39, 57, 160
Hpy166II	GTNNAC	2 cut(s)	157, 304
Hpy188I	TCNGA	2 cut(s)	219, 293
Hpy188III	TCNNGA	3 cut(s)	22, 57, 226
Hpy8I	GTNNAC	2 cut(s)	157, 304
Hpy99I	CGWCG	3 cut(s)	170, 333, 347
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 109
HpyF3I	CTNAG	4 cut(s)	66, 140, 189, 290
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	2 cut(s)	183, 196
Kpn2I	TCCGGA	1 cut(s)	56
KpnI	GGTACC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	219, 238
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	52, 70, 83, 173, 296, 323
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	52, 126
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	221, 240
MboI	GATC	2 cut(s)	219, 238
MboII	GAAGA	1 cut(s)	267
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	50, 336
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	137, 233
MroI	TCCGGA	1 cut(s)	56
MseI	TTAA	1 cut(s)	358
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	3 cut(s)	39, 57, 160
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	2 cut(s)	185, 196
MwoI	GCNNNNNNNGC	2 cut(s)	35, 109
NdeII	GATC	2 cut(s)	219, 238
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	9, 164
RsaNI	GTAC	2 cut(s)	8, 163
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	219, 238
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	6 cut(s)	9, 83, 105, 152, 234, 358
SfaNI	GCATC	2 cut(s)	52, 126
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	50, 336
SsiI	CCGC	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	5 cut(s)	23, 45, 77, 84, 225
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	2 cut(s)	50, 336
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TscAI	CASTG	2 cut(s)	102, 241
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	102, 241
XapI	RAATTY	2 cut(s)	50, 336
XhoI	CTCGAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.